Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003386.1

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Forward (+)

20992 .. 22652

Gene Structure 1661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003386.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggcggacgatattggtttctttgagctgaacaccggagctaagatgccttctttaggcttagggacctggcaggccagccctggcttggtcggtgacgccgtcgccgccgccatcaaggcaggatatcggcatattgattgtgccccagtctatggcaatgagaaggagattggtctggttttgaagaagctgtttgaagacggtgttgtgaagcgcgaggagttgtggattacctccaaactagcgtctactgatcatgcaccagaagatgtaccggatgcattggataggactttgagagacttgcagcttgattatgttgatttgtacctgatccactggccagtgcggaagaagaaggattcagtaggttttgggcctgaaaaccttatacaaccagatatccctgccacatggagagcaatggaaactctctatgattcaagcaaggctcgagctattggtgtgagcaatttcgctacaaagaagctgtcagatttgctggatgtggcacgagttcctcctgctgttaaccaggtggagtgccatccttcgtggcagcaggccaagctgcgatcattctgcaaatccaagggggttcacctttctggatattcaccgctgggttctcctggcacaacatttatcaaaggcgatgtccttaagaatccgattcttctcagcgtggcagagaagctaggcaaaactcctgcacaggttgctcttcgatggggactgcaaatgggtcatagtgttcttccaaagagtactaatgaagcaaggatcaaggagaatctcgatgtctttggctggtctatcccagaagacttgtttgccaaattttctgaaattgagcaggtaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

289

Amino Acids

31.78

Weight (kDa)

6.61

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	850
AccB7I	CCANNNNNTGG	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	251
AccII	CGCG	1 cut(s)	219
AciI	CCGC	5 cut(s)	5, 108, 111, 352, 623
AclWI	GGATC	2 cut(s)	331, 794
AcoI	YGGCCR	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	842
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	3 cut(s)	276, 332, 772
AfiI	CCNNNNNNNGG	3 cut(s)	56, 88, 155
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	3 cut(s)	187, 200, 447
AjnI	CCWGG	4 cut(s)	68, 82, 537, 634
AluBI	AGCT	8 cut(s)	28, 41, 193, 313, 461, 493, 574, 700
AluI	AGCT	8 cut(s)	28, 41, 193, 313, 461, 493, 574, 700
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	331, 794
Ama87I	CYCGRG	1 cut(s)	456
AoxI	GGCC	4 cut(s)	75, 344, 380, 567
ApeKI	GCWGC	3 cut(s)	310, 562, 574
ApoI	RAATTY	1 cut(s)	842
ArsI	GACNNNNNNTTYG	4 cut(s)	479, 511, 645, 677
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	66, 380
AsuHPI	GGTGA	3 cut(s)	107, 596, 612
AvaI	CYCGRG	1 cut(s)	456
AvaII	GGWCC	1 cut(s)	66
BaeGI	GKGCMC	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	346
BauI	CACGAG	1 cut(s)	516
BbsI	GAAGAC	2 cut(s)	207, 834
BbvI	GCAGC	3 cut(s)	322, 561, 574
BccI	CCATC	3 cut(s)	122, 558, 726
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	567, 601
BciT130I	CCWGG	4 cut(s)	70, 84, 539, 636
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	2 cut(s)	245, 701
BfrI	CTTAAG	1 cut(s)	665
BfuAI	ACCTGC	1 cut(s)	850
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	5 cut(s)	108, 111, 311, 563, 575
BlsI	GCNGC	5 cut(s)	109, 112, 312, 564, 576
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	4 cut(s)	70, 84, 539, 636
Bme18I	GGWCC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	456
BmgT120I	GGNCC	2 cut(s)	66, 380
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	4 cut(s)	70, 84, 539, 636
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	2 cut(s)	36, 271
BmuI	ACTGGG	1 cut(s)	143
BpiI	GAAGAC	2 cut(s)	207, 834
Bpu10I	CCTNAGC	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	82, 594
BsaWI	WCCGGW	2 cut(s)	35, 277
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 88, 155
Bse1I	ACTGG	3 cut(s)	149, 347, 347
Bse3DI	GCAATG	2 cut(s)	166, 432
BseBI	CCWGG	4 cut(s)	70, 84, 539, 636
BseDI	CCNNGG	2 cut(s)	82, 594
BseGI	GGATG	3 cut(s)	286, 514, 550
BseLI	CCNNNNNNNGG	3 cut(s)	56, 88, 155
BseMI	GCAATG	2 cut(s)	166, 432
BseMII	CTCAG	1 cut(s)	697
BseNI	ACTGG	3 cut(s)	149, 347, 347
BseRI	GAGGAG	1 cut(s)	236
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	3 cut(s)	322, 561, 574
BseYI	CCCAGC	1 cut(s)	625
BsgI	GTGCAG	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	4 cut(s)	77, 346, 382, 569
BsiHKCI	CYCGRG	1 cut(s)	456
BsiSI	CCGG	2 cut(s)	36, 278
BslFI	GGGAC	2 cut(s)	79, 750
BslI	CCNNNNNNNGG	3 cut(s)	56, 88, 155
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	2 cut(s)	79, 750
BsnI	GGCC	4 cut(s)	77, 346, 382, 569
BsoBI	CYCGRG	1 cut(s)	456
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	256, 336, 578, 786
BspACI	CCGC	5 cut(s)	5, 108, 111, 352, 623
BspANI	GGCC	4 cut(s)	77, 346, 382, 569
BspCNI	CTCAG	1 cut(s)	696
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	850
BspPI	GGATC	2 cut(s)	331, 794
BspQI	GCTCTTC	1 cut(s)	732
BspTI	CTTAAG	1 cut(s)	665
BsrDI	GCAATG	2 cut(s)	166, 432
BsrI	ACTGG	3 cut(s)	149, 347, 347
BssECI	CCNNGG	2 cut(s)	82, 594
BssMI	GATC	4 cut(s)	256, 336, 578, 786
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	1 cut(s)	516
BssT1I	CCWWGG	1 cut(s)	594
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	4 cut(s)	70, 84, 539, 636
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	732
BstACI	GRCGYC	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	665
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstC8I	GCNNGC	3 cut(s)	75, 79, 567
BstDEI	CTNAG	3 cut(s)	42, 61, 683
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	3 cut(s)	286, 514, 550
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	4 cut(s)	259, 339, 581, 789
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	4 cut(s)	256, 336, 578, 786
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 119, 571, 722
BstNI	CCWGG	4 cut(s)	70, 84, 539, 636
BstSCI	CCNGG	4 cut(s)	68, 82, 537, 634
BstSLI	GKGCMC	1 cut(s)	148
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	3 cut(s)	322, 561, 574
BstV2I	GAAGAC	2 cut(s)	207, 834
BsuRI	GGCC	4 cut(s)	77, 346, 382, 569
BtgZI	GCGATG	1 cut(s)	672
BtsCI	GGATG	3 cut(s)	286, 514, 550
BtsIMutI	CAGTG	2 cut(s)	340, 354
BveI	ACCTGC	1 cut(s)	850
Cac8I	GCNNGC	3 cut(s)	75, 79, 567
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	2 cut(s)	66, 380
CseI	GACGC	2 cut(s)	107, 237
CsiI	ACCWGGT	1 cut(s)	537
Csp6I	GTAC	3 cut(s)	275, 331, 771
CviAII	CATG	2 cut(s)	260, 417
CviQI	GTAC	3 cut(s)	275, 331, 771
DdeI	CTNAG	3 cut(s)	42, 61, 683
DpnI	GATC	4 cut(s)	258, 338, 580, 788
DpnII	GATC	4 cut(s)	256, 336, 578, 786
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	732
EarI	CTCTTC	1 cut(s)	732
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	594
Eco32I	GATATC	2 cut(s)	128, 406
Eco47I	GGWCC	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	4 cut(s)	68, 82, 537, 634
EcoRV	GATATC	2 cut(s)	128, 406
EcoT14I	CCWWGG	1 cut(s)	594
EcoT22I	ATGCAT	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	2 cut(s)	263, 420
FaiI	YATR	8 cut(s)	135, 156, 261, 321, 395, 418, 441, 753
FaqI	GGGAC	2 cut(s)	79, 750
FatI	CATG	2 cut(s)	259, 416
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	251
Fnu4HI	GCNGC	5 cut(s)	108, 111, 311, 563, 575
FokI	GGATG	3 cut(s)	293, 521, 537
Fsp4HI	GCNGC	5 cut(s)	108, 111, 311, 563, 575
FspBI	CTAG	2 cut(s)	245, 701
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	5 cut(s)	108, 111, 311, 563, 575
GsaI	CCCAGC	1 cut(s)	629
HaeIII	GGCC	4 cut(s)	77, 346, 382, 569
HapII	CCGG	2 cut(s)	36, 278
HgaI	GACGC	2 cut(s)	107, 237
HhaI	GCGC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	263, 420
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	5 cut(s)	365, 443, 670, 676, 796
HpaI	GTTAAC	1 cut(s)	535
HpaII	CCGG	2 cut(s)	36, 278
HphI	GGTGA	3 cut(s)	107, 596, 612
Hpy166II	GTNNAC	3 cut(s)	252, 535, 604
Hpy188I	TCNGA	3 cut(s)	499, 675, 850
Hpy188III	TCNNGA	2 cut(s)	612, 800
Hpy8I	GTNNAC	3 cut(s)	252, 535, 604
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	4 cut(s)	60, 160, 355, 564
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	6 cut(s)	263, 284, 310, 588, 716, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 119, 571, 722
HpyF3I	CTNAG	3 cut(s)	42, 61, 683
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	263, 420
HspAI	GCGC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	256
KspAI	GTTAAC	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	256, 336, 578, 786
LguI	GCTCTTC	1 cut(s)	732
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	3 cut(s)	322, 561, 574
LweI	GCATC	2 cut(s)	36, 271
MabI	ACCWGGT	1 cut(s)	537
MaeI	CTAG	2 cut(s)	245, 701
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	4 cut(s)	258, 338, 580, 788
MboI	GATC	4 cut(s)	256, 336, 578, 786
MboII	GAAGA	9 cut(s)	199, 212, 281, 367, 370, 671, 719, 752, 839
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	3 cut(s)	475, 842, 852
MluNI	TGGCCA	1 cut(s)	346
MnlI	CCTC	3 cut(s)	214, 247, 534
Mox20I	TGGCCA	1 cut(s)	346
Mph1103I	ATGCAT	1 cut(s)	286
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	2 cut(s)	534, 666
Msp20I	TGGCCA	1 cut(s)	346
MspA1I	CMGCKG	1 cut(s)	625
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	2 cut(s)	36, 278
MspR9I	CCNGG	4 cut(s)	70, 84, 539, 636
MvaI	CCWGG	4 cut(s)	70, 84, 539, 636
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	4 cut(s)	107, 119, 571, 722
NdeII	GATC	4 cut(s)	256, 336, 578, 786
NlaIII	CATG	2 cut(s)	263, 420
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	95
NsiI	ATGCAT	1 cut(s)	286
PaeR7I	CTCGAG	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	732
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	5 cut(s)	365, 443, 670, 676, 796
PflFI	GACNNNGTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	5 cut(s)	109, 112, 312, 564, 576
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	4 cut(s)	68, 82, 537, 634
PspFI	CCCAGC	1 cut(s)	625
PspGI	CCWGG	4 cut(s)	68, 82, 537, 634
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	2 cut(s)	66, 380
PspPPI	RGGWCCY	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	456
PsyI	GACNNNGTC	1 cut(s)	101
RsaI	GTAC	3 cut(s)	276, 332, 772
RsaNI	GTAC	3 cut(s)	275, 331, 771
SapI	GCTCTTC	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	534, 666
SatI	GCNGC	5 cut(s)	108, 111, 311, 563, 575
Sau3AI	GATC	4 cut(s)	256, 336, 578, 786
Sau96I	GGNCC	2 cut(s)	66, 380
ScaI	AGTACT	1 cut(s)	772
ScrFI	CCNGG	4 cut(s)	70, 84, 539, 636
SduI	GDGCHC	1 cut(s)	148
SexAI	ACCWGGT	1 cut(s)	537
SfaNI	GCATC	2 cut(s)	36, 271
Sfr274I	CTCGAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	66
SlaI	CTCGAG	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	456, 665
SmoI	CTYRAG	2 cut(s)	456, 665
Sse9I	AATT	3 cut(s)	475, 842, 852
SsiI	CCGC	5 cut(s)	5, 108, 111, 352, 623
SspMI	CTAG	2 cut(s)	245, 701
StyD4I	CCNGG	4 cut(s)	68, 82, 537, 634
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	3 cut(s)	457, 730, 801
TasI	AATT	3 cut(s)	475, 842, 852
TatI	WGTACW	1 cut(s)	770
TauI	GCSGC	2 cut(s)	110, 113
TfiI	GAWTC	5 cut(s)	365, 443, 670, 676, 796
Tru1I	TTAA	2 cut(s)	534, 666
Tru9I	TTAA	2 cut(s)	534, 666
TscAI	CASTG	2 cut(s)	347, 354
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	3 cut(s)	310, 562, 574
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	1 cut(s)	792
TspRI	CASTG	2 cut(s)	347, 354
Tth111I	GACNNNGTC	1 cut(s)	101
Van91I	CCANNNNNTGG	1 cut(s)	155
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	66
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	1 cut(s)	842
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	2 cut(s)	245, 701
ZrmI	AGTACT	1 cut(s)	772
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.