Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021566.1

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Reverse (-)

2597 .. 3423

Gene Structure 827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021566.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggaaactctctatgattcaagcaaggctcgagctattggtgtgagcaatttcgctacaaagaagctgtcagatttgctggatgtggcacgagttcctcctgctgttaaccaggtggagtgccatccttcgtggcagcaggccaagctgcgatcattctgcaaatccaagggggttcacctttctggatattcaccgctgggttctcctggcacaacatttatcaaaggcgatgtccttaagaatccgattcttctcagcgtggcagagaagctaggcaaaactcctgcacaggttgctcttcgatggggactgcaaatgggtcatagtgttcttccaaagagtactaatgaagcaaggatcaaggagaatctcgatgtctttggctggtctatcccagaagacttgtttgccaaattttctgaaattgagcaggaaaggctagtcaaagggaccttttttgtacatgacacttttggaccctatagaagtgtggaagaactctgggatggtgaaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

173

Amino Acids

19.2

Weight (kDa)

7.78

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	416
AfaI	GTAC	2 cut(s)	346, 465
AflII	CTTAAG	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	21
AjnI	CCWGG	2 cut(s)	111, 208
AluBI	AGCT	4 cut(s)	35, 67, 148, 274
AluI	AGCT	4 cut(s)	35, 67, 148, 274
AlwI	GGATC	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	136, 148
ApoI	RAATTY	1 cut(s)	416
ArsI	GACNNNNNNTTYG	4 cut(s)	53, 85, 219, 251
AspS9I	GGNCC	2 cut(s)	453, 479
AsuHPI	GGTGA	2 cut(s)	170, 186
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	2 cut(s)	453, 479
BauI	CACGAG	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	135, 148
BccI	CCATC	3 cut(s)	132, 300, 503
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BciT130I	CCWGG	2 cut(s)	113, 210
BfaI	CTAG	3 cut(s)	275, 443, 520
BfmI	CTRYAG	1 cut(s)	484
BfrI	CTTAAG	1 cut(s)	239
BisI	GCNGC	2 cut(s)	137, 149
BlsI	GCNGC	2 cut(s)	138, 150
BmcAI	AGTACT	1 cut(s)	346
Bme1390I	CCNGG	2 cut(s)	113, 210
Bme18I	GGWCC	2 cut(s)	453, 479
BmeT110I	CYCGRG	1 cut(s)	30
BmgT120I	GGNCC	2 cut(s)	453, 479
BmiI	GGNNCC	2 cut(s)	454, 481
BmrFI	CCNGG	2 cut(s)	113, 210
BpiI	GAAGAC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	113, 210
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	3 cut(s)	88, 124, 514
BseMII	CTCAG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	135, 148
BseYI	CCCAGC	1 cut(s)	199
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	30
BslFI	GGGAC	2 cut(s)	324, 466
BsmFI	GGGAC	2 cut(s)	324, 466
BsnI	GGCC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	30
Bsp1407I	TGTACA	1 cut(s)	463
Bsp143I	GATC	2 cut(s)	152, 360
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	454, 481
BspPI	GGATC	1 cut(s)	368
BspQI	GCTCTTC	1 cut(s)	306
BspTI	CTTAAG	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	152, 360
BssSI	CACGAG	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	113, 210
Bst6I	CTCTTC	1 cut(s)	306
BstAFI	CTTAAG	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstAUI	TGTACA	1 cut(s)	463
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	257
BstF5I	GGATG	3 cut(s)	88, 124, 514
BstKTI	GATC	2 cut(s)	155, 363
BstMBI	GATC	2 cut(s)	152, 360
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 296, 439
BstNI	CCWGG	2 cut(s)	113, 210
BstSCI	CCNGG	2 cut(s)	111, 208
BstSFI	CTRYAG	1 cut(s)	484
BstV1I	GCAGC	2 cut(s)	135, 148
BstV2I	GAAGAC	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	143
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	3 cut(s)	88, 124, 514
Cac8I	GCNNGC	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	453, 479
CsiI	ACCWGGT	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	345, 464
CviAII	CATG	1 cut(s)	467
CviJI	RGCY	8 cut(s)	29, 35, 67, 143, 148, 274, 387, 442
CviKI_1	RGCY	8 cut(s)	29, 35, 67, 143, 148, 274, 387, 442
CviQI	GTAC	2 cut(s)	345, 464
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	2 cut(s)	154, 362
DpnII	GATC	2 cut(s)	152, 360
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	168
Eco47I	GGWCC	2 cut(s)	453, 479
Eco88I	CYCGRG	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	453
EcoRII	CCWGG	2 cut(s)	111, 208
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	1 cut(s)	470
FaiI	YATR	4 cut(s)	15, 327, 468, 486
FaqI	GGGAC	2 cut(s)	324, 466
FatI	CATG	1 cut(s)	466
Fnu4HI	GCNGC	2 cut(s)	137, 149
FokI	GGATG	2 cut(s)	95, 111
Fsp4HI	GCNGC	2 cut(s)	137, 149
FspBI	CTAG	3 cut(s)	275, 443, 520
GluI	GCNGC	2 cut(s)	137, 149
GsaI	CCCAGC	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	470
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	4 cut(s)	17, 244, 250, 370
HpaI	GTTAAC	1 cut(s)	109
HphI	GGTGA	2 cut(s)	170, 186
Hpy166II	GTNNAC	2 cut(s)	109, 178
Hpy188I	TCNGA	3 cut(s)	73, 249, 424
Hpy188III	TCNNGA	2 cut(s)	186, 374
Hpy8I	GTNNAC	2 cut(s)	109, 178
HpyAV	CCTTC	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	162, 290, 316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 296, 439
HpyF3I	CTNAG	1 cut(s)	257
Hsp92II	CATG	1 cut(s)	470
KspAI	GTTAAC	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	152, 360
LguI	GCTCTTC	1 cut(s)	306
Lsp1109I	GCAGC	2 cut(s)	135, 148
MabI	ACCWGGT	1 cut(s)	111
MaeI	CTAG	3 cut(s)	275, 443, 520
MalI	GATC	2 cut(s)	154, 362
MboI	GATC	2 cut(s)	152, 360
MboII	GAAGA	5 cut(s)	245, 293, 326, 413, 509
MluCI	AATT	3 cut(s)	49, 416, 426
MnlI	CCTC	1 cut(s)	108
MseI	TTAA	2 cut(s)	108, 240
MspA1I	CMGCKG	1 cut(s)	199
MspCI	CTTAAG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	113, 210
MvaI	CCWGG	2 cut(s)	113, 210
MwoI	GCNNNNNNNGC	3 cut(s)	145, 296, 439
NdeII	GATC	2 cut(s)	152, 360
NlaIII	CATG	1 cut(s)	470
NlaIV	GGNNCC	2 cut(s)	454, 481
PaeR7I	CTCGAG	1 cut(s)	30
PciSI	GCTCTTC	1 cut(s)	306
PfeI	GAWTC	4 cut(s)	17, 244, 250, 370
PkrI	GCNGC	2 cut(s)	138, 150
PpuMI	RGGWCCY	1 cut(s)	453
Psp5II	RGGWCCY	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	111, 208
PspFI	CCCAGC	1 cut(s)	199
PspGI	CCWGG	2 cut(s)	111, 208
PspN4I	GGNNCC	2 cut(s)	454, 481
PspPI	GGNCC	2 cut(s)	453, 479
PspPPI	RGGWCCY	1 cut(s)	453
PspXI	VCTCGAGB	1 cut(s)	30
RsaI	GTAC	2 cut(s)	346, 465
RsaNI	GTAC	2 cut(s)	345, 464
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	108, 240
SatI	GCNGC	2 cut(s)	137, 149
Sau3AI	GATC	2 cut(s)	152, 360
Sau96I	GGNCC	2 cut(s)	453, 479
ScaI	AGTACT	1 cut(s)	346
ScrFI	CCNGG	2 cut(s)	113, 210
SetI	ASST	8 cut(s)	37, 69, 117, 150, 183, 276, 297, 458
SexAI	ACCWGGT	1 cut(s)	111
SfcI	CTRYAG	1 cut(s)	484
Sfr274I	CTCGAG	1 cut(s)	30
SinI	GGWCC	2 cut(s)	453, 479
SlaI	CTCGAG	1 cut(s)	30
SmlI	CTYRAG	2 cut(s)	30, 239
SmoI	CTYRAG	2 cut(s)	30, 239
Sse9I	AATT	3 cut(s)	49, 416, 426
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	3 cut(s)	275, 443, 520
StyD4I	CCNGG	2 cut(s)	111, 208
StyI	CCWWGG	1 cut(s)	168
TaqI	TCGA	3 cut(s)	31, 304, 375
TasI	AATT	3 cut(s)	49, 416, 426
TatI	WGTACW	2 cut(s)	344, 463
TfiI	GAWTC	4 cut(s)	17, 244, 250, 370
Tru1I	TTAA	2 cut(s)	108, 240
Tru9I	TTAA	2 cut(s)	108, 240
TseI	GCWGC	2 cut(s)	136, 148
TspDTI	ATGAA	1 cut(s)	366
Vha464I	CTTAAG	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	453, 479
XapI	RAATTY	1 cut(s)	416
XhoI	CTCGAG	1 cut(s)	30
XspI	CTAG	3 cut(s)	275, 443, 520
ZrmI	AGTACT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.