Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Reverse (-)

11148559 .. 11150079

Gene Structure 1521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G011470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCGGACGATATTCGTTTCTTTGAGTTGAACACCGGAGCCAAGATGCCTTCTTTGGGATTAGGGACCTGGCAGTCCAGCCCCGGCTTGGTCGGTGAAGCCGTCGCCACCGCCATCAAGGCAGGATATAGGCATATTGATTGTGCTCAAGCCTATGGCAACGAGAAAGAGATTGGTTTGGTTTTGAAGAAGCTGTTTGAAGATGGTGTGGTGAAGCGCGAAGAATTGTGGATTACCTCCAAGCTCTGGTGTACGGATCATGCCCCAGAAGATGTACCAGAGGCATTGGATAGGACTTTGAAAGACTTGCAGCTTGATTATGTTGACTTGTACTTGATCCACTGGCCAGTGCGGATGAAGAAGGGTGCAGTCGGTTTTAAGCCTGAAAACCTTGTTGAACCAGATATCCCTGGTACTTGGAGAGCAATGGAAACTCTCTTTGATTCGTGCAAGGCTCGAGCTATTGGTCTGAGCAATTTTGCTACAAAGAAGCTGTCAGATTTGCTGGATGTGGCACGTGTCCCTCCTGCTGTTGACCAAGTGGAGTGCCATCCTTCATATATGGCAACAGACCAAGCTGCGATCCTTCTGCAAATCCAAGGGGGTTCACCTTTCTGGATATTCACCACTGGGTTCTCCTGGCACAACATGGATCAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

220

Amino Acids

24.57

Weight (kDa)

5.25

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	19 - 186	7.2e-34	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccII	CGCG	1 cut(s)	219
AciI	CCGC	3 cut(s)	5, 111, 352
AclWI	GGATC	4 cut(s)	264, 331, 577, 660
AcoI	YGGCCR	1 cut(s)	344
AcvI	CACGTG	1 cut(s)	518
AfaI	GTAC	4 cut(s)	253, 276, 332, 415
AfiI	CCNNNNNNNGG	3 cut(s)	56, 88, 246
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	5 cut(s)	31, 187, 200, 301, 398
AjnI	CCWGG	3 cut(s)	68, 409, 638
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	6 cut(s)	193, 244, 313, 461, 493, 578
AluI	AGCT	6 cut(s)	193, 244, 313, 461, 493, 578
Alw21I	GWGCWC	1 cut(s)	148
AlwI	GGATC	4 cut(s)	264, 331, 577, 660
Ama87I	CYCGRG	1 cut(s)	456
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	2 cut(s)	310, 578
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	4 cut(s)	107, 223, 600, 616
AvaI	CYCGRG	1 cut(s)	456
AvaII	GGWCC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	346
BbrPI	CACGTG	1 cut(s)	518
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	322, 565
BccI	CCATC	3 cut(s)	122, 197, 558
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BciT130I	CCWGG	3 cut(s)	70, 411, 640
BcnI	CCSGG	1 cut(s)	84
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	2 cut(s)	311, 579
BlsI	GCNGC	2 cut(s)	312, 580
Bme1390I	CCNGG	4 cut(s)	70, 84, 411, 640
Bme18I	GGWCC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	456
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	40, 67
BmrFI	CCNGG	4 cut(s)	70, 84, 411, 640
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	84
BsaAI	YACGTR	1 cut(s)	518
BsaJI	CCNNGG	3 cut(s)	82, 409, 598
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 88, 246
Bse1I	ACTGG	3 cut(s)	347, 347, 634
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	3 cut(s)	70, 411, 640
BseDI	CCNNGG	3 cut(s)	82, 409, 598
BseGI	GGATG	3 cut(s)	360, 514, 550
BseLI	CCNNNNNNNGG	3 cut(s)	56, 88, 246
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	3 cut(s)	347, 347, 634
BseXI	GCAGC	2 cut(s)	322, 565
BsgI	GTGCAG	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	456
BsiSI	CCGG	2 cut(s)	36, 84
BslFI	GGGAC	2 cut(s)	79, 506
BslI	CCNNNNNNNGG	3 cut(s)	56, 88, 246
BsmFI	GGGAC	2 cut(s)	79, 506
BsnI	GGCC	1 cut(s)	346
BsoBI	CYCGRG	1 cut(s)	456
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	256, 336, 582, 652
BspACI	CCGC	3 cut(s)	5, 111, 352
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	1 cut(s)	462
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	40, 67
BspPI	GGATC	4 cut(s)	264, 331, 577, 660
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	3 cut(s)	347, 347, 634
BssECI	CCNNGG	3 cut(s)	82, 409, 598
BssMI	GATC	4 cut(s)	256, 336, 582, 652
BssT1I	CCWWGG	1 cut(s)	598
Bst2UI	CCWGG	3 cut(s)	70, 411, 640
BstBAI	YACGTR	1 cut(s)	518
BstDEI	CTNAG	1 cut(s)	470
BstF5I	GGATG	3 cut(s)	360, 514, 550
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	4 cut(s)	259, 339, 585, 655
BstMBI	GATC	4 cut(s)	256, 336, 582, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	3 cut(s)	70, 411, 640
BstSCI	CCNGG	4 cut(s)	68, 82, 409, 638
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	322, 565
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	3 cut(s)	360, 514, 550
BtsIMutI	CAGTG	3 cut(s)	340, 354, 627
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	4 cut(s)	252, 275, 331, 414
CviAII	CATG	2 cut(s)	260, 649
CviQI	GTAC	4 cut(s)	252, 275, 331, 414
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	4 cut(s)	258, 338, 584, 654
DpnII	GATC	4 cut(s)	256, 336, 582, 652
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	344
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	598
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	66
Eco72I	CACGTG	1 cut(s)	518
Eco88I	CYCGRG	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	3 cut(s)	68, 409, 638
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	598
FaeI	CATG	2 cut(s)	263, 652
FaiI	YATR	9 cut(s)	129, 135, 156, 261, 321, 559, 561, 563, 650
FaqI	GGGAC	2 cut(s)	79, 506
FatI	CATG	2 cut(s)	259, 648
Fnu4HI	GCNGC	2 cut(s)	311, 579
FokI	GGATG	3 cut(s)	367, 521, 537
Fsp4HI	GCNGC	2 cut(s)	311, 579
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	2 cut(s)	311, 579
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	2 cut(s)	36, 84
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	263, 652
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HincII	GTYRAC	2 cut(s)	325, 535
HindII	GTYRAC	2 cut(s)	325, 535
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	2 cut(s)	36, 84
HphI	GGTGA	4 cut(s)	107, 223, 600, 616
Hpy166II	GTNNAC	4 cut(s)	252, 325, 535, 608
Hpy188I	TCNGA	2 cut(s)	471, 499
Hpy188III	TCNNGA	1 cut(s)	616
Hpy8I	GTNNAC	4 cut(s)	252, 325, 535, 608
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	4 cut(s)	60, 355, 564, 596
HpyCH4IV	ACGT	1 cut(s)	517
HpyCH4V	TGCA	4 cut(s)	310, 368, 450, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	470
HpySE526I	ACGT	1 cut(s)	517
Hsp92II	CATG	2 cut(s)	263, 652
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	4 cut(s)	256, 336, 582, 652
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	2 cut(s)	322, 565
LweI	GCATC	1 cut(s)	36
MaeII	ACGT	1 cut(s)	517
MalI	GATC	4 cut(s)	258, 338, 584, 654
MboI	GATC	4 cut(s)	256, 336, 582, 652
MboII	GAAGA	5 cut(s)	199, 212, 233, 281, 370
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	2 cut(s)	224, 475
MluNI	TGGCCA	1 cut(s)	346
MnlI	CCTC	3 cut(s)	247, 274, 534
Mox20I	TGGCCA	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	1 cut(s)	378
Msp20I	TGGCCA	1 cut(s)	346
MspI	CCGG	2 cut(s)	36, 84
MspR9I	CCNGG	4 cut(s)	70, 84, 411, 640
MvaI	CCWGG	3 cut(s)	70, 411, 640
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	4 cut(s)	256, 336, 582, 652
NlaIII	CATG	2 cut(s)	263, 652
NlaIV	GGNNCC	2 cut(s)	40, 67
PaeR7I	CTCGAG	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	2 cut(s)	312, 580
PmaCI	CACGTG	1 cut(s)	518
PmlI	CACGTG	1 cut(s)	518
Ppu21I	YACGTR	1 cut(s)	518
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	3 cut(s)	68, 409, 638
PspCI	CACGTG	1 cut(s)	518
PspGI	CCWGG	3 cut(s)	68, 409, 638
PspN4I	GGNNCC	2 cut(s)	40, 67
PspPI	GGNCC	1 cut(s)	66
PspPPI	RGGWCCY	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	456
RsaI	GTAC	4 cut(s)	253, 276, 332, 415
RsaNI	GTAC	4 cut(s)	252, 275, 331, 414
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	2 cut(s)	311, 579
Sau3AI	GATC	4 cut(s)	256, 336, 582, 652
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	4 cut(s)	70, 84, 411, 640
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	36
Sfr274I	CTCGAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	66
SlaI	CTCGAG	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	147, 456
SmoI	CTYRAG	2 cut(s)	147, 456
Sse9I	AATT	2 cut(s)	224, 475
SsiI	CCGC	3 cut(s)	5, 111, 352
StyD4I	CCNGG	4 cut(s)	68, 82, 409, 638
StyI	CCWWGG	1 cut(s)	598
TaiI	ACGT	1 cut(s)	520
TaqI	TCGA	1 cut(s)	457
TasI	AATT	2 cut(s)	224, 475
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	3 cut(s)	347, 354, 634
TseI	GCWGC	2 cut(s)	310, 578
TspDTI	ATGAA	2 cut(s)	371, 546
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	3 cut(s)	347, 354, 634
Van91I	CCANNNNNTGG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.