Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Forward (+)

6528607 .. 6536256

Gene Structure 7650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G094300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCAGGATATCGGCATATTGATTGTGCTCAACTCTATGCCAATGAGAAGGAGAAGCTATTTGAAGATGGTGCGGTGAAGCGTGAGGATTTGTGGATTACTTCCAAACTCTGGTGTACTGATCATGCACCAGAAGATGTACCAGAGGCATTGGACAGGACTTTGAGAGACTTGCAGCTCGATTATGTTGACTTGTATCTTCCTGCTGAAAATTTGAACATACACTGGCCAGCCAGGATGAAGAAGGGGTCAGTAGGTTTTAAGCATGAAAACCTTATTGACCCAGATATCCCTGCAACTTGGAGAGCAATGGAATCACTCTATGATTCGGGAAGGCTCGAGCTATTGGCCAGCCACACTTATACACCAACAAATTTCTCTACAAACAAGCTGTCAGATTTGCTGGATATTGCACGTGTTCCTCCTGCTGTTGACCAAGTGGAGTTTCATCCTTCATGGCAGCAGGCCAAGCTGCGTTCTTTCTGTAAATCCAAGGGTGTTCATCTTTCTGGATATTCACCACTGGGTTCTCCTGGAACAACATGGATTAAAAGCGAAGTCCTTAAGAATCTAATTCTTCTCACTGTTGCTGAGAAATTAGGCAAAACTCCTGCACAAGTTGCTCTTAGATGGGGACTGCAAATGGGTCATAGTGTTCTTCCTAAATGTACTAATGAAGCAAAGATCAAGGAGAACCTTGATGTTGGCTGGTCTATCCCAGAGGACTTGTTTCCCAAGTTTTCTGAAATTGAGCAGGCAAGGCTGATCAGAGGGGGCTCGTATGTTCATGATACTTTTGGTCCCTACAGGAGCATAGAGGAGTTCTGGGATGGTGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

281

Amino Acids

31.82

Weight (kDa)

5.63

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	111
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	2 cut(s)	227, 348
AcsI	RAATTY	2 cut(s)	211, 373
AcvI	CACGTG	1 cut(s)	416
AfaI	GTAC	3 cut(s)	118, 141, 670
AfiI	CCNNNNNNNGG	1 cut(s)	111
AflII	CTTAAG	1 cut(s)	563
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	2 cut(s)	65, 217
AjnI	CCWGG	2 cut(s)	233, 532
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	5 cut(s)	58, 178, 343, 391, 472
AluI	AGCT	5 cut(s)	58, 178, 343, 391, 472
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	162
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	3 cut(s)	227, 348, 465
ApeKI	GCWGC	3 cut(s)	175, 460, 472
ApoI	RAATTY	2 cut(s)	211, 373
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
AspS9I	GGNCC	1 cut(s)	800
AsuHPI	GGTGA	2 cut(s)	88, 510
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	800
BalI	TGGCCA	2 cut(s)	229, 350
BanII	GRGCYC	1 cut(s)	779
BbrPI	CACGTG	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	3 cut(s)	187, 459, 472
BccI	CCATC	3 cut(s)	62, 624, 824
BciT130I	CCWGG	2 cut(s)	235, 534
BclI	TGATCA	2 cut(s)	121, 765
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	841
BfmI	CTRYAG	1 cut(s)	805
BfrI	CTTAAG	1 cut(s)	563
BisI	GCNGC	3 cut(s)	176, 461, 473
BlsI	GCNGC	3 cut(s)	177, 462, 474
Bme1390I	CCNGG	2 cut(s)	235, 534
Bme18I	GGWCC	1 cut(s)	800
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	800
BmiI	GGNNCC	1 cut(s)	802
BmrFI	CCNGG	2 cut(s)	235, 534
BmrI	ACTGGG	1 cut(s)	533
BmuI	ACTGGG	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	2 cut(s)	230, 528
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	235, 534
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	3 cut(s)	243, 448, 835
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	2 cut(s)	230, 528
BseRI	GAGGAG	1 cut(s)	833
BseXI	GCAGC	3 cut(s)	187, 459, 472
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	3 cut(s)	229, 350, 467
BsiHKAI	GWGCWC	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	338
BslFI	GGGAC	2 cut(s)	648, 786
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	2 cut(s)	648, 786
BsnI	GGCC	3 cut(s)	229, 350, 467
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	31, 779
Bsp143I	GATC	3 cut(s)	121, 684, 765
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	3 cut(s)	229, 350, 467
BspCNI	CTCAG	1 cut(s)	583
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	1 cut(s)	802
BspTI	CTTAAG	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	230, 528
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	3 cut(s)	121, 684, 765
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	2 cut(s)	235, 534
Bst4CI	ACNGT	1 cut(s)	586
BstAFI	CTTAAG	1 cut(s)	563
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstBAI	YACGTR	1 cut(s)	416
BstC8I	GCNNGC	4 cut(s)	231, 352, 465, 756
BstDEI	CTNAG	2 cut(s)	591, 626
BstF5I	GGATG	3 cut(s)	243, 448, 835
BstKTI	GATC	3 cut(s)	124, 687, 768
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	3 cut(s)	121, 684, 765
BstMWI	GCNNNNNNNGC	3 cut(s)	469, 620, 760
BstNI	CCWGG	2 cut(s)	235, 534
BstSCI	CCNGG	2 cut(s)	233, 532
BstSFI	CTRYAG	1 cut(s)	805
BstV1I	GCAGC	3 cut(s)	187, 459, 472
BsuRI	GGCC	3 cut(s)	229, 350, 467
BtsCI	GGATG	3 cut(s)	243, 448, 835
BtsIMutI	CAGTG	3 cut(s)	223, 521, 582
Cac8I	GCNNGC	4 cut(s)	231, 352, 465, 756
CciI	TCATGA	1 cut(s)	787
Cfr13I	GGNCC	1 cut(s)	800
Csp6I	GTAC	3 cut(s)	117, 140, 669
CviAII	CATG	5 cut(s)	125, 266, 456, 543, 788
CviQI	GTAC	3 cut(s)	117, 140, 669
DdeI	CTNAG	2 cut(s)	591, 626
DpnI	GATC	3 cut(s)	123, 686, 767
DpnII	GATC	3 cut(s)	121, 684, 765
EaeI	YGGCCR	2 cut(s)	227, 348
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	779
Eco32I	GATATC	2 cut(s)	11, 289
Eco47I	GGWCC	1 cut(s)	800
Eco72I	CACGTG	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	233, 532
EcoRV	GATATC	2 cut(s)	11, 289
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	779
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	5 cut(s)	128, 269, 459, 546, 791
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FaqI	GGGAC	2 cut(s)	648, 786
FatI	CATG	5 cut(s)	124, 265, 455, 542, 787
FbaI	TGATCA	2 cut(s)	121, 765
Fnu4HI	GCNGC	3 cut(s)	176, 461, 473
FokI	GGATG	2 cut(s)	250, 435
FriOI	GRGCYC	1 cut(s)	779
Fsp4HI	GCNGC	3 cut(s)	176, 461, 473
FspBI	CTAG	1 cut(s)	841
GluI	GCNGC	3 cut(s)	176, 461, 473
HaeIII	GGCC	3 cut(s)	229, 350, 467
Hin1II	CATG	5 cut(s)	128, 269, 459, 546, 791
HincII	GTYRAC	2 cut(s)	190, 433
HindII	GTYRAC	2 cut(s)	190, 433
HinfI	GANTC	3 cut(s)	314, 326, 568
HphI	GGTGA	2 cut(s)	88, 510
Hpy166II	GTNNAC	3 cut(s)	117, 190, 433
Hpy188I	TCNGA	3 cut(s)	397, 745, 770
Hpy188III	TCNNGA	3 cut(s)	330, 510, 788
Hpy8I	GTNNAC	3 cut(s)	117, 190, 433
HpyAV	CCTTC	4 cut(s)	43, 238, 327, 462
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	6 cut(s)	128, 175, 296, 413, 614, 640
HpyF10VI	GCNNNNNNNGC	3 cut(s)	469, 620, 760
HpyF3I	CTNAG	2 cut(s)	591, 626
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	5 cut(s)	128, 269, 459, 546, 791
Ksp22I	TGATCA	2 cut(s)	121, 765
Kzo9I	GATC	3 cut(s)	121, 684, 765
LmnI	GCTCC	1 cut(s)	810
Lsp1109I	GCAGC	3 cut(s)	187, 459, 472
MaeI	CTAG	1 cut(s)	841
MaeII	ACGT	1 cut(s)	415
MalI	GATC	3 cut(s)	123, 686, 767
MboI	GATC	3 cut(s)	121, 684, 765
MboII	GAAGA	6 cut(s)	77, 146, 191, 253, 569, 650
MhlI	GDGCHC	2 cut(s)	31, 779
MlsI	TGGCCA	2 cut(s)	229, 350
MluCI	AATT	5 cut(s)	211, 373, 573, 596, 747
MluNI	TGGCCA	2 cut(s)	229, 350
MnlI	CCTC	6 cut(s)	79, 139, 432, 715, 764, 811
Mox20I	TGGCCA	2 cut(s)	229, 350
MscI	TGGCCA	2 cut(s)	229, 350
MseI	TTAA	3 cut(s)	261, 549, 564
Msp20I	TGGCCA	2 cut(s)	229, 350
MspCI	CTTAAG	1 cut(s)	563
MspR9I	CCNGG	2 cut(s)	235, 534
MvaI	CCWGG	2 cut(s)	235, 534
MwoI	GCNNNNNNNGC	3 cut(s)	469, 620, 760
NdeII	GATC	3 cut(s)	121, 684, 765
NlaIII	CATG	5 cut(s)	128, 269, 459, 546, 791
NlaIV	GGNNCC	1 cut(s)	802
PaeR7I	CTCGAG	1 cut(s)	338
PagI	TCATGA	1 cut(s)	787
PfeI	GAWTC	3 cut(s)	314, 326, 568
PflMI	CCANNNNNTGG	1 cut(s)	111
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	3 cut(s)	177, 462, 474
PmaCI	CACGTG	1 cut(s)	416
PmlI	CACGTG	1 cut(s)	416
Ppu21I	YACGTR	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	233, 532
PspCI	CACGTG	1 cut(s)	416
PspGI	CCWGG	2 cut(s)	233, 532
PspN4I	GGNNCC	1 cut(s)	802
PspPI	GGNCC	1 cut(s)	800
PspXI	VCTCGAGB	1 cut(s)	338
RsaI	GTAC	3 cut(s)	118, 141, 670
RsaNI	GTAC	3 cut(s)	117, 140, 669
SaqAI	TTAA	3 cut(s)	261, 549, 564
SatI	GCNGC	3 cut(s)	176, 461, 473
Sau3AI	GATC	3 cut(s)	121, 684, 765
Sau96I	GGNCC	1 cut(s)	800
ScrFI	CCNGG	2 cut(s)	235, 534
SduI	GDGCHC	2 cut(s)	31, 779
SetI	ASST	9 cut(s)	60, 180, 259, 276, 345, 393, 418, 474, 699
SfcI	CTRYAG	1 cut(s)	805
Sfr274I	CTCGAG	1 cut(s)	338
SinI	GGWCC	1 cut(s)	800
SlaI	CTCGAG	1 cut(s)	338
SmlI	CTYRAG	2 cut(s)	338, 563
SmoI	CTYRAG	2 cut(s)	338, 563
Sse9I	AATT	5 cut(s)	211, 373, 573, 596, 747
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	841
StyD4I	CCNGG	2 cut(s)	233, 532
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	1 cut(s)	586
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	2 cut(s)	180, 339
TasI	AATT	5 cut(s)	211, 373, 573, 596, 747
TatI	WGTACW	2 cut(s)	116, 668
TfiI	GAWTC	3 cut(s)	314, 326, 568
Tru1I	TTAA	3 cut(s)	261, 549, 564
Tru9I	TTAA	3 cut(s)	261, 549, 564
TscAI	CASTG	3 cut(s)	230, 528, 589
TseI	GCWGC	3 cut(s)	175, 460, 472
TspDTI	ATGAA	7 cut(s)	254, 282, 437, 444, 491, 690, 776
TspRI	CASTG	3 cut(s)	230, 528, 589
Van91I	CCANNNNNTGG	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	563
VpaK11BI	GGWCC	1 cut(s)	800
XapI	RAATTY	2 cut(s)	211, 373
XhoI	CTCGAG	1 cut(s)	338
XspI	CTAG	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.