Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018026.1

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Reverse (-)

8596 .. 10013

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018026.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atggcggacgatattggtttctttgagctgaacaccggagctaagatgccttcttttggcttagggacctggcaggccagccctggcttggtcggtgaagccgtcgctgccgccatcaaggcaggatatcggcatattgattgtgctccagtctatggcaatgagaaggagattggtttagttttgaagaagctgtttgaagacggtgtggtgaagcgcgaggagttgtggattacctccaaactagcgtctactgatcatgcaccagaagatgtaccggatgcattggataggactttgagagacttgcagcttgattatgttgacttgtacctgatccacgggccagtgcggatgaagaaggattcagtaggttctgggcctgaaaaccttatacaaccagatatccctgccacatggagagcaatggaaactctctatgattcgtgcaaggctcgagctattggtgtgagcaatttcgctacaaagaagctgtcagatttgctggatgtggcacgagttcctcctgctgttaaccaagtggagtgccatccttcatggcagcaggccaagctacgatccttctgcaaatccaagggggttcacctttctgtgagtatgcaatgcaaatctgaatgttgtcgtcttctgtcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

218

Amino Acids

23.95

Weight (kDa)

6.21

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	251
AccII	CGCG	1 cut(s)	219
AciI	CCGC	3 cut(s)	5, 111, 352
AclWI	GGATC	2 cut(s)	331, 573
AfaI	GTAC	2 cut(s)	276, 332
AfiI	CCNNNNNNNGG	3 cut(s)	56, 88, 155
AgsI	TTSAA	2 cut(s)	187, 200
AjnI	CCWGG	2 cut(s)	68, 82
AluBI	AGCT	7 cut(s)	28, 41, 193, 313, 461, 493, 574
AluI	AGCT	7 cut(s)	28, 41, 193, 313, 461, 493, 574
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	331, 573
Ama87I	CYCGRG	1 cut(s)	456
AoxI	GGCC	4 cut(s)	75, 344, 380, 567
ApeKI	GCWGC	3 cut(s)	107, 310, 562
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	3 cut(s)	66, 344, 380
AsuHPI	GGTGA	3 cut(s)	107, 223, 596
AvaI	CYCGRG	1 cut(s)	456
AvaII	GGWCC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	516
BbsI	GAAGAC	2 cut(s)	207, 638
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	3 cut(s)	94, 322, 574
BccI	CCATC	2 cut(s)	122, 558
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	567, 601
BciT130I	CCWGG	2 cut(s)	70, 84
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	4 cut(s)	108, 111, 311, 563
BlsI	GCNGC	4 cut(s)	109, 112, 312, 564
Bme1390I	CCNGG	2 cut(s)	70, 84
Bme18I	GGWCC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	456
BmgT120I	GGNCC	3 cut(s)	66, 344, 380
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	2 cut(s)	70, 84
BmsI	GCATC	2 cut(s)	36, 271
BpiI	GAAGAC	2 cut(s)	207, 638
BpmI	CTGGAG	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	61
BsaJI	CCNNGG	3 cut(s)	82, 340, 594
BsaWI	WCCGGW	2 cut(s)	35, 277
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 88, 155
Bse1I	ACTGG	2 cut(s)	149, 347
Bse3DI	GCAATG	3 cut(s)	166, 432, 629
BseBI	CCWGG	2 cut(s)	70, 84
BseDI	CCNNGG	3 cut(s)	82, 340, 594
BseGI	GGATG	4 cut(s)	286, 360, 514, 550
BseLI	CCNNNNNNNGG	3 cut(s)	56, 88, 155
BseMI	GCAATG	3 cut(s)	166, 432, 629
BseNI	ACTGG	2 cut(s)	149, 347
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	3 cut(s)	94, 322, 574
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	4 cut(s)	77, 346, 382, 569
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	456
BsiSI	CCGG	2 cut(s)	36, 278
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	56, 88, 155
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	4 cut(s)	77, 346, 382, 569
BsoBI	CYCGRG	1 cut(s)	456
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	256, 336, 578
BspACI	CCGC	3 cut(s)	5, 111, 352
BspANI	GGCC	4 cut(s)	77, 346, 382, 569
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	67
BspPI	GGATC	2 cut(s)	331, 573
BsrDI	GCAATG	3 cut(s)	166, 432, 629
BsrI	ACTGG	2 cut(s)	149, 347
BssECI	CCNNGG	3 cut(s)	82, 340, 594
BssMI	GATC	3 cut(s)	256, 336, 578
BssSI	CACGAG	1 cut(s)	516
BssT1I	CCWWGG	1 cut(s)	594
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	2 cut(s)	70, 84
Bst4CI	ACNGT	1 cut(s)	206
BstC8I	GCNNGC	3 cut(s)	75, 79, 567
BstDEI	CTNAG	2 cut(s)	42, 61
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	4 cut(s)	286, 360, 514, 550
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	3 cut(s)	259, 339, 581
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	3 cut(s)	256, 336, 578
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 119, 571
BstNI	CCWGG	2 cut(s)	70, 84
BstSCI	CCNGG	2 cut(s)	68, 82
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	3 cut(s)	94, 322, 574
BstV2I	GAAGAC	2 cut(s)	207, 638
BsuRI	GGCC	4 cut(s)	77, 346, 382, 569
BtgI	CCRYGG	1 cut(s)	340
BtsCI	GGATG	4 cut(s)	286, 360, 514, 550
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	3 cut(s)	75, 79, 567
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	3 cut(s)	66, 344, 380
CseI	GACGC	1 cut(s)	237
Csp6I	GTAC	2 cut(s)	275, 331
CviAII	CATG	3 cut(s)	260, 417, 558
CviQI	GTAC	2 cut(s)	275, 331
DdeI	CTNAG	2 cut(s)	42, 61
DpnI	GATC	3 cut(s)	258, 338, 580
DpnII	GATC	3 cut(s)	256, 336, 578
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	594
Eco32I	GATATC	2 cut(s)	128, 406
Eco47I	GGWCC	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	2 cut(s)	68, 82
EcoRV	GATATC	2 cut(s)	128, 406
EcoT14I	CCWWGG	1 cut(s)	594
EcoT22I	ATGCAT	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	3 cut(s)	263, 420, 561
FaiI	YATR	9 cut(s)	135, 156, 261, 321, 395, 418, 441, 559, 620
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	3 cut(s)	259, 416, 557
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	251
Fnu4HI	GCNGC	4 cut(s)	108, 111, 311, 563
FokI	GGATG	4 cut(s)	293, 367, 521, 537
Fsp4HI	GCNGC	4 cut(s)	108, 111, 311, 563
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	4 cut(s)	108, 111, 311, 563
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	4 cut(s)	77, 346, 382, 569
HapII	CCGG	2 cut(s)	36, 278
HgaI	GACGC	1 cut(s)	237
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	3 cut(s)	263, 420, 561
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HincII	GTYRAC	2 cut(s)	325, 535
HindII	GTYRAC	2 cut(s)	325, 535
HinfI	GANTC	2 cut(s)	365, 443
HpaI	GTTAAC	1 cut(s)	535
HpaII	CCGG	2 cut(s)	36, 278
HphI	GGTGA	3 cut(s)	107, 223, 596
Hpy166II	GTNNAC	4 cut(s)	252, 325, 535, 604
Hpy188I	TCNGA	2 cut(s)	499, 634
Hpy188III	TCNNGA	1 cut(s)	654
Hpy8I	GTNNAC	4 cut(s)	252, 325, 535, 604
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	5 cut(s)	60, 160, 355, 564, 592
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	7 cut(s)	263, 284, 310, 450, 588, 622, 627
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 119, 571
HpyF3I	CTNAG	2 cut(s)	42, 61
Hsp92II	CATG	3 cut(s)	263, 420, 561
HspAI	GCGC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	256
KspAI	GTTAAC	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	256, 336, 578
LmnI	GCTCC	2 cut(s)	38, 151
Lsp1109I	GCAGC	3 cut(s)	94, 322, 574
LweI	GCATC	2 cut(s)	36, 271
MaeI	CTAG	1 cut(s)	245
MalI	GATC	3 cut(s)	258, 338, 580
MboI	GATC	3 cut(s)	256, 336, 578
MboII	GAAGA	5 cut(s)	199, 212, 281, 370, 638
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	1 cut(s)	475
MnlI	CCTC	3 cut(s)	214, 247, 534
Mph1103I	ATGCAT	1 cut(s)	286
MseI	TTAA	1 cut(s)	534
MspI	CCGG	2 cut(s)	36, 278
MspR9I	CCNGG	2 cut(s)	70, 84
MvaI	CCWGG	2 cut(s)	70, 84
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	107, 119, 571
NdeII	GATC	3 cut(s)	256, 336, 578
NlaIII	CATG	3 cut(s)	263, 420, 561
NlaIV	GGNNCC	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	286
PaeR7I	CTCGAG	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	365, 443
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	4 cut(s)	109, 112, 312, 564
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	2 cut(s)	68, 82
PspGI	CCWGG	2 cut(s)	68, 82
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	3 cut(s)	66, 344, 380
PspPPI	RGGWCCY	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	456
RsaI	GTAC	2 cut(s)	276, 332
RsaNI	GTAC	2 cut(s)	275, 331
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	4 cut(s)	108, 111, 311, 563
Sau3AI	GATC	3 cut(s)	256, 336, 578
Sau96I	GGNCC	3 cut(s)	66, 344, 380
ScrFI	CCNGG	2 cut(s)	70, 84
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	2 cut(s)	36, 271
Sfr274I	CTCGAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	66
SlaI	CTCGAG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
Sse9I	AATT	1 cut(s)	475
SsiI	CCGC	3 cut(s)	5, 111, 352
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	68, 82
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	1 cut(s)	457
TasI	AATT	1 cut(s)	475
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	365, 443
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	1 cut(s)	354
TseI	GCWGC	3 cut(s)	107, 310, 562
TspDTI	ATGAA	2 cut(s)	371, 546
TspRI	CASTG	1 cut(s)	354
Van91I	CCANNNNNTGG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	1 cut(s)	245
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.