Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003492.1

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Reverse (-)

92268 .. 93826

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003492.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atggcggacgatattcgtttctttgagttgaacaccggagccaagatgccttctttgggattagggacctggcagtccagccccggcttggtcggtgaagccgtcgccaccgccatcaaggcaggatataggcatattgattgtgctcaagcctatggcaacgagaaagagattggtttggttttgaagaagctgtttgaagatggtgtggtgaagcgcgaagaattgtggattacctccaagctctggtgtacggatcatgccccagaagatgtaccagaggcattggataggactctgaaagacttgcagcttgattatgttgacttgtacttggtatgttctggagtgtgtgcatatggtttatcagatcattcagatggctttaacatgataagtgtcatgcctagttcagctgtaactaatgaccacactgaaaatttgaacatccactggccagtgcggatgaagaagggtgcagtcggttttaagcctgaaaaccttgttgaaccagatatccctggtacttggagagcaatggaaactctctttgattcgtgcaaggctcgagctattggtctgagcaattttgctacaaagaagctgtcagatttgctggatgtggcacgtgtccctcctgctgttgaccaagtggagtgccatccttcatatatggcaacagaccaagctgcgatccttctgcaaatccaagggggttcacctttctgtgagtatgcaatgcaattgctgaatggtggtgtcatgtgtcttgagcaaaatattaatagtcgtagcatttttagttggctagaaaataataagggaggtatatattcttctttcagggatattcaccactgggttctcctggcacaacatggatcaaaagtgatgtccttaagaatccgattcttctcagcgttgcagagaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

311

Amino Acids

34.52

Weight (kDa)

5.6

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccII	CGCG	1 cut(s)	219
AciI	CCGC	3 cut(s)	5, 111, 463
AclWI	GGATC	3 cut(s)	264, 688, 889
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	1 cut(s)	439
AcvI	CACGTG	1 cut(s)	629
AfaI	GTAC	4 cut(s)	253, 276, 332, 526
AfiI	CCNNNNNNNGG	3 cut(s)	56, 88, 246
AflII	CTTAAG	1 cut(s)	898
AflIII	ACRYGT	1 cut(s)	628
AgsI	TTSAA	5 cut(s)	31, 187, 200, 445, 509
AjnI	CCWGG	3 cut(s)	68, 520, 867
AloI	GAACNNNNNNTCC	2 cut(s)	501, 533
AluBI	AGCT	8 cut(s)	193, 244, 313, 416, 572, 604, 689, 933
AluI	AGCT	8 cut(s)	193, 244, 313, 416, 572, 604, 689, 933
Alw21I	GWGCWC	1 cut(s)	148
AlwI	GGATC	3 cut(s)	264, 688, 889
Ama87I	CYCGRG	1 cut(s)	567
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	2 cut(s)	310, 689
ApoI	RAATTY	1 cut(s)	439
ArsI	GACNNNNNNTTYG	4 cut(s)	590, 622, 878, 910
AseI	ATTAAT	1 cut(s)	783
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	4 cut(s)	107, 223, 711, 845
AvaI	CYCGRG	1 cut(s)	567
AvaII	GGWCC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	457
BarI	GAAGNNNNNNTAC	2 cut(s)	820, 852
BbrPI	CACGTG	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	322, 676
BccI	CCATC	4 cut(s)	122, 197, 374, 669
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	682, 716
BciT130I	CCWGG	3 cut(s)	70, 522, 869
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	3 cut(s)	408, 809, 934
BfrI	CTTAAG	1 cut(s)	898
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	2 cut(s)	311, 690
BlsI	GCNGC	2 cut(s)	312, 691
Bme1390I	CCNGG	4 cut(s)	70, 84, 522, 869
Bme18I	GGWCC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	567
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	40, 67
BmrFI	CCNGG	4 cut(s)	70, 84, 522, 869
BmrI	ACTGGG	1 cut(s)	868
BmsI	GCATC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	868
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	2 cut(s)	132, 791
BpuMI	CCSGG	1 cut(s)	84
BsaAI	YACGTR	1 cut(s)	629
BsaJI	CCNNGG	3 cut(s)	82, 520, 709
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 88, 246
Bse1I	ACTGG	3 cut(s)	458, 458, 863
Bse3DI	GCAATG	2 cut(s)	543, 744
BseBI	CCWGG	3 cut(s)	70, 522, 869
BseDI	CCNNGG	3 cut(s)	82, 520, 709
BseGI	GGATG	4 cut(s)	447, 471, 625, 661
BseLI	CCNNNNNNNGG	3 cut(s)	56, 88, 246
BseMI	GCAATG	2 cut(s)	543, 744
BseMII	CTCAG	2 cut(s)	572, 930
BseNI	ACTGG	3 cut(s)	458, 458, 863
BseXI	GCAGC	2 cut(s)	322, 676
BsgI	GTGCAG	1 cut(s)	498
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	567
BsiSI	CCGG	2 cut(s)	36, 84
BslFI	GGGAC	2 cut(s)	79, 617
BslI	CCNNNNNNNGG	3 cut(s)	56, 88, 246
BsmFI	GGGAC	2 cut(s)	79, 617
BsnI	GGCC	1 cut(s)	457
BsoBI	CYCGRG	1 cut(s)	567
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	256, 370, 693, 881
BspACI	CCGC	3 cut(s)	5, 111, 463
BspANI	GGCC	1 cut(s)	457
BspCNI	CTCAG	2 cut(s)	573, 929
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	40, 67
BspPI	GGATC	3 cut(s)	264, 688, 889
BspTI	CTTAAG	1 cut(s)	898
BsrDI	GCAATG	2 cut(s)	543, 744
BsrI	ACTGG	3 cut(s)	458, 458, 863
BssECI	CCNNGG	3 cut(s)	82, 520, 709
BssMI	GATC	4 cut(s)	256, 370, 693, 881
BssT1I	CCWWGG	1 cut(s)	709
Bst2UI	CCWGG	3 cut(s)	70, 522, 869
BstAFI	CTTAAG	1 cut(s)	898
BstBAI	YACGTR	1 cut(s)	629
BstDEI	CTNAG	2 cut(s)	581, 916
BstF5I	GGATG	4 cut(s)	447, 471, 625, 661
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	4 cut(s)	259, 373, 696, 884
BstMBI	GATC	4 cut(s)	256, 370, 693, 881
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	3 cut(s)	70, 522, 869
BstSCI	CCNGG	4 cut(s)	68, 82, 520, 867
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	322, 676
BsuRI	GGCC	1 cut(s)	457
BtsCI	GGATG	4 cut(s)	447, 471, 625, 661
BtsIMutI	CAGTG	4 cut(s)	432, 451, 465, 856
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	4 cut(s)	252, 275, 331, 525
CviAII	CATG	5 cut(s)	260, 391, 403, 763, 878
CviQI	GTAC	4 cut(s)	252, 275, 331, 525
DdeI	CTNAG	2 cut(s)	581, 916
DpnI	GATC	4 cut(s)	258, 372, 695, 883
DpnII	GATC	4 cut(s)	256, 370, 693, 881
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	455
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	709
Eco32I	GATATC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	66
Eco72I	CACGTG	1 cut(s)	629
Eco88I	CYCGRG	1 cut(s)	567
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	3 cut(s)	68, 520, 867
EcoRV	GATATC	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	709
FaeI	CATG	5 cut(s)	263, 394, 406, 766, 881
FaqI	GGGAC	2 cut(s)	79, 617
FatI	CATG	5 cut(s)	259, 390, 402, 762, 877
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	311, 690
FokI	GGATG	4 cut(s)	434, 478, 632, 648
Fsp4HI	GCNGC	2 cut(s)	311, 690
FspBI	CTAG	3 cut(s)	408, 809, 934
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	2 cut(s)	311, 690
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	457
HapII	CCGG	2 cut(s)	36, 84
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	5 cut(s)	263, 394, 406, 766, 881
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HincII	GTYRAC	2 cut(s)	325, 646
HindII	GTYRAC	2 cut(s)	325, 646
HinfI	GANTC	4 cut(s)	295, 554, 903, 909
HpaII	CCGG	2 cut(s)	36, 84
HphI	GGTGA	4 cut(s)	107, 223, 711, 845
Hpy166II	GTNNAC	4 cut(s)	252, 325, 646, 719
Hpy188I	TCNGA	6 cut(s)	300, 370, 379, 582, 610, 908
Hpy188III	TCNNGA	2 cut(s)	345, 770
Hpy8I	GTNNAC	4 cut(s)	252, 325, 646, 719
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	4 cut(s)	60, 466, 675, 707
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	8 cut(s)	310, 356, 479, 561, 703, 737, 742, 925
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	2 cut(s)	581, 916
HpySE526I	ACGT	1 cut(s)	628
Hsp92II	CATG	5 cut(s)	263, 394, 406, 766, 881
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	4 cut(s)	256, 370, 693, 881
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	2 cut(s)	322, 676
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	3 cut(s)	408, 809, 934
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	4 cut(s)	258, 372, 695, 883
MboI	GATC	4 cut(s)	256, 370, 693, 881
MboII	GAAGA	7 cut(s)	199, 212, 233, 281, 481, 828, 904
MfeI	CAATTG	1 cut(s)	743
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	457
MluCI	AATT	4 cut(s)	224, 439, 586, 743
MluNI	TGGCCA	1 cut(s)	457
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	4 cut(s)	247, 274, 645, 818
Mox20I	TGGCCA	1 cut(s)	457
MscI	TGGCCA	1 cut(s)	457
MseI	TTAA	4 cut(s)	387, 489, 783, 899
MslI	CAYNNNNRTG	1 cut(s)	378
Msp20I	TGGCCA	1 cut(s)	457
MspA1I	CMGCKG	1 cut(s)	416
MspCI	CTTAAG	1 cut(s)	898
MspI	CCGG	2 cut(s)	36, 84
MspR9I	CCNGG	4 cut(s)	70, 84, 522, 869
MunI	CAATTG	1 cut(s)	743
MvaI	CCWGG	3 cut(s)	70, 522, 869
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	84
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	4 cut(s)	256, 370, 693, 881
NlaIII	CATG	5 cut(s)	263, 394, 406, 766, 881
NlaIV	GGNNCC	2 cut(s)	40, 67
PaeR7I	CTCGAG	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	554, 903, 909
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	2 cut(s)	312, 691
PleI	GAGTC	1 cut(s)	289
PmaCI	CACGTG	1 cut(s)	629
PmlI	CACGTG	1 cut(s)	629
PpsI	GAGTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	629
PpuMI	RGGWCCY	1 cut(s)	66
PshBI	ATTAAT	1 cut(s)	783
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	3 cut(s)	68, 520, 867
PspCI	CACGTG	1 cut(s)	629
PspGI	CCWGG	3 cut(s)	68, 520, 867
PspN4I	GGNNCC	2 cut(s)	40, 67
PspPI	GGNCC	1 cut(s)	66
PspPPI	RGGWCCY	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	567
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	4 cut(s)	253, 276, 332, 526
RsaNI	GTAC	4 cut(s)	252, 275, 331, 525
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	4 cut(s)	387, 489, 783, 899
SatI	GCNGC	2 cut(s)	311, 690
Sau3AI	GATC	4 cut(s)	256, 370, 693, 881
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	4 cut(s)	70, 84, 522, 869
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	36
Sfr274I	CTCGAG	1 cut(s)	567
SinI	GGWCC	1 cut(s)	66
SlaI	CTCGAG	1 cut(s)	567
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	4 cut(s)	147, 567, 770, 898
SmoI	CTYRAG	4 cut(s)	147, 567, 770, 898
Sse9I	AATT	4 cut(s)	224, 439, 586, 743
SsiI	CCGC	3 cut(s)	5, 111, 463
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	3 cut(s)	408, 809, 934
StyD4I	CCNGG	4 cut(s)	68, 82, 520, 867
StyI	CCWWGG	1 cut(s)	709
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	1 cut(s)	568
TasI	AATT	4 cut(s)	224, 439, 586, 743
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	3 cut(s)	554, 903, 909
Tru1I	TTAA	4 cut(s)	387, 489, 783, 899
Tru9I	TTAA	4 cut(s)	387, 489, 783, 899
TscAI	CASTG	4 cut(s)	439, 458, 465, 863
TseI	GCWGC	2 cut(s)	310, 689
TspDTI	ATGAA	2 cut(s)	482, 657
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	4 cut(s)	439, 458, 465, 863
Van91I	CCANNNNNTGG	1 cut(s)	246
Vha464I	CTTAAG	1 cut(s)	898
VpaK11BI	GGWCC	1 cut(s)	66
VspI	ATTAAT	1 cut(s)	783
XapI	RAATTY	1 cut(s)	439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	567
XspI	CTAG	3 cut(s)	408, 809, 934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.