RchiOBHm_Chr3g0465311

Aldo-keto reductase family 4 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001859
Physical Location & Seq
Reverse (-)
12118947 .. 12119992
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43147

Sequence Viewer

Length: 534 bp
ATGACGTCACCAGTCAAAGTCAACAGCATATGTGACGTGTATATAATACATGAGCGTTTTACGAGGTTTCTATTCCACAGTAATCGAACATTCTCATTTTTTTTTTACTTGGAAAATATGGCGAATGCGATTCGATTCTTTGAGATGAACACCGGAGCGCAGATTCCGGCCGTCGGTTTGGGGACGTGGCAGGCCGAGCCCGGCGTCGTTGGCGATGCCGTCACCGCCGCCATCAAGGTTGGGTATAGGCATATTGATTGTGCTCAAATTTATGGAAACGAAAAAGAGATTGGTTGTGCTCTGAAGAAGCTATATGATGATGGTGTAGTGAAGCGTGAGGACTTGTGGATCACTTCAAAACTCTGGTGTAGTAATCATGCACCAGAAGATGTGCCAAAGGCACTAGATGGCACCCTGCAGGACTTGCAAAGTGACTATCTCGATCTGTACCTGGTACGAAAGAAGGATATAATACAGGCCATTAAGCACAGACAGCAACCTTGCAAGTCTCACTATTTCCATAGACTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

177

Amino Acids

20.35

Weight (kDa)

7.68

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 58 - 152 2.6e-17 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 410
AciI CCGC 2 cut(s) 225, 228
AclWI GGATC 1 cut(s) 356
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 323
AcyI GRCGYC 2 cut(s) 5, 204
AfaI GTAC 2 cut(s) 449, 456
AfiI CCNNNNNNNGG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 1 cut(s) 357
AjiI CACGTC 2 cut(s) 37, 186
AjnI CCWGG 1 cut(s) 450
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
Alw21I GWGCWC 2 cut(s) 265, 301
Alw26I GTCTC 1 cut(s) 513
AlwI GGATC 1 cut(s) 356
AoxI GGCC 3 cut(s) 168, 192, 477
ApoI RAATTY 1 cut(s) 267
AspLEI GCGC 1 cut(s) 160
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 214
BanI GGYRCC 1 cut(s) 410
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 2 cut(s) 265, 301
BccI CCATC 3 cut(s) 239, 314, 401
BceAI ACGGC 2 cut(s) 155, 203
BciT130I CCWGG 1 cut(s) 452
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 1 cut(s) 404
BfmI CTRYAG 1 cut(s) 416
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 2 cut(s) 201, 452
BmgBI CACGTC 2 cut(s) 37, 186
BmiI GGNNCC 1 cut(s) 412
BmrFI CCNGG 2 cut(s) 201, 452
BmsI GCATC 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 201
BsaHI GRCGYC 2 cut(s) 5, 204
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 452
BseLI CCNNNNNNNGG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 11
BseX3I CGGCCG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 3 cut(s) 170, 194, 479
BshNI GGYRCC 1 cut(s) 410
BsiEI CGRYCG 1 cut(s) 171
BsiHKAI GWGCWC 2 cut(s) 265, 301
BsiSI CCGG 3 cut(s) 153, 167, 201
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 196
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 3 cut(s) 170, 194, 479
Bsp1286I GDGCHC 3 cut(s) 201, 265, 301
Bsp143I GATC 2 cut(s) 348, 442
BspACI CCGC 2 cut(s) 225, 228
BspANI GGCC 3 cut(s) 170, 194, 479
BspLI GGNNCC 1 cut(s) 412
BspMAI CTGCAG 1 cut(s) 420
BspPI GGATC 1 cut(s) 356
BspT107I GGYRCC 1 cut(s) 410
BsrI ACTGG 1 cut(s) 11
BssMI GATC 2 cut(s) 348, 442
BssNI GRCGYC 2 cut(s) 5, 204
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 1 cut(s) 80
BstACI GRCGYC 2 cut(s) 5, 204
BstAPI GCANNNNNTGC 1 cut(s) 424
BstC8I GCNNGC 1 cut(s) 192
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 2 cut(s) 351, 445
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 2 cut(s) 348, 442
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 5 cut(s) 196, 210, 224, 424, 493
BstNI CCWGG 1 cut(s) 452
BstSCI CCNGG 2 cut(s) 199, 450
BstSFI CTRYAG 1 cut(s) 416
BstZI CGGCCG 1 cut(s) 168
BsuRI GGCC 3 cut(s) 170, 194, 479
BtgZI GCGATG 1 cut(s) 228
BtrI CACGTC 2 cut(s) 37, 186
Cac8I GCNNGC 1 cut(s) 192
CfoI GCGC 1 cut(s) 160
CseI GACGC 1 cut(s) 193
CsiI ACCWGGT 1 cut(s) 450
Csp6I GTAC 2 cut(s) 448, 455
CviAII CATG 2 cut(s) 50, 377
CviJI RGCY 5 cut(s) 170, 194, 199, 310, 479
CviKI_1 RGCY 5 cut(s) 170, 194, 199, 310, 479
CviQI GTAC 2 cut(s) 448, 455
DpnI GATC 2 cut(s) 350, 444
DpnII GATC 2 cut(s) 348, 442
EaeI YGGCCR 1 cut(s) 168
EagI CGGCCG 1 cut(s) 168
EclXI CGGCCG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 201
Eco52I CGGCCG 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 2 cut(s) 53, 380
FaqI GGGAC 1 cut(s) 196
FatI CATG 2 cut(s) 49, 376
FauNDI CATATG 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 1 cut(s) 404
GlaI GCGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 228
HaeIII GGCC 3 cut(s) 170, 194, 479
HapII CCGG 3 cut(s) 153, 167, 201
HgaI GACGC 1 cut(s) 193
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 2 cut(s) 5, 204
Hin1II CATG 2 cut(s) 53, 380
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 3 cut(s) 130, 135, 163
HpaII CCGG 3 cut(s) 153, 167, 201
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 1 cut(s) 440
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 2 cut(s) 176, 209
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4IV ACGT 3 cut(s) 5, 36, 185
HpyCH4V TGCA 4 cut(s) 380, 418, 427, 504
HpyF10VI GCNNNNNNNGC 5 cut(s) 196, 210, 224, 424, 493
HpySE526I ACGT 3 cut(s) 5, 36, 185
Hsp92I GRCGYC 2 cut(s) 5, 204
Hsp92II CATG 2 cut(s) 53, 380
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 2 cut(s) 348, 442
LmnI GCTCC 1 cut(s) 155
LweI GCATC 1 cut(s) 205
MabI ACCWGGT 1 cut(s) 450
MaeI CTAG 1 cut(s) 404
MaeII ACGT 3 cut(s) 5, 36, 185
MaeIII GTNAC 4 cut(s) 6, 32, 220, 431
MalI GATC 2 cut(s) 350, 444
MboI GATC 2 cut(s) 348, 442
MboII GAAGA 2 cut(s) 316, 398
MhlI GDGCHC 3 cut(s) 201, 265, 301
MluCI AATT 1 cut(s) 267
MnlI CCTC 2 cut(s) 57, 331
MseI TTAA 1 cut(s) 483
MspI CCGG 3 cut(s) 153, 167, 201
MspR9I CCNGG 2 cut(s) 201, 452
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 1 cut(s) 452
MwoI GCNNNNNNNGC 5 cut(s) 196, 210, 224, 424, 493
NciI CCSGG 1 cut(s) 201
NdeI CATATG 1 cut(s) 29
NdeII GATC 2 cut(s) 348, 442
NlaIII CATG 2 cut(s) 53, 380
NlaIV GGNNCC 1 cut(s) 412
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 4 cut(s) 6, 32, 220, 431
PctI GAATGC 1 cut(s) 130
PfeI GAWTC 3 cut(s) 130, 135, 163
PkrI GCNGC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 1 cut(s) 412
PstI CTGCAG 1 cut(s) 420
RsaI GTAC 2 cut(s) 449, 456
RsaNI GTAC 2 cut(s) 448, 455
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 2 cut(s) 348, 442
SbfI CCTGCAGG 1 cut(s) 420
ScrFI CCNGG 2 cut(s) 201, 452
SdaI CCTGCAGG 1 cut(s) 420
SduI GDGCHC 3 cut(s) 201, 265, 301
SetI ASST 8 cut(s) 8, 39, 68, 188, 240, 312, 453, 502
SexAI ACCWGGT 1 cut(s) 450
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 416
Sse8387I CCTGCAGG 1 cut(s) 420
Sse9I AATT 1 cut(s) 267
SsiI CCGC 2 cut(s) 225, 228
SspMI CTAG 1 cut(s) 404
StyD4I CCNGG 2 cut(s) 199, 450
TaaI ACNGT 1 cut(s) 80
TaiI ACGT 3 cut(s) 8, 39, 188
TaqI TCGA 3 cut(s) 85, 133, 441
TasI AATT 1 cut(s) 267
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 3 cut(s) 130, 135, 163
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TseFI GTSAC 4 cut(s) 6, 32, 220, 431
Tsp45I GTSAC 4 cut(s) 6, 32, 220, 431
TspDTI ATGAA 1 cut(s) 161
XapI RAATTY 1 cut(s) 267
XspI CTAG 1 cut(s) 404
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.