Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Forward (+)

15288423 .. 15290942

Gene Structure 2520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12320.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGGACGACATTCGTTTCTTCGAGCTGAACACCGGAGCTAAGATCCCTTCTGTAGGGTTGGGGACCTGGCAGTCAAACCCTGGCCTCGTCGGCGACGCCGTACACGCCGCTGTCAAGGCGGGTTGTCGACATATTGATTGTGCTCAATTCTACGGCAATGAGAAGGAGGTTGGTTTGGTTCTAAAGAAACTGTTTGAAGATGGTGCGGTGAAGCGCGAGGATTTGTGGATTACTTCCAAACTCTGGTGTACTGATCATGCTCCCGAAGATGTACCAGAGGCTTTGGACAGGACTTTGAGAGACTTGCAACTGGATTATGTTGACTTGTACCTTATACACTGGCCAGTCCGGATGAAGAAAGGGTCTGTGGGTTTTAAGCCTGAAAACCTTACTGATACTGATATCCCAGCAACTTGGAGAGCAATGGAAACCCTCTATGATTCGGGCAAGGCTCGAGCTATTGGTGTGTGCAATTTCTCCACAAAGAAGCTGTCAGATTTGCTGGATGTTGCACGTGTTCCTCCTGCTGTTGACCAAGTGGAGTGCCATCCTGTATGGCAGCAGAACAAGCTACGTTCCCTCTGTAAATCCAAGGGAGTTCACCTTTCTGGATATTCACCACTGGGCTCTCCTGGAACAACATGGGTCAAACTTGAAGTCCTTAAGAATCCGATTCTTCGGACAGTTGCTGAAAAATTAGGCAAAACTCCTGCACAAGTTGCTCTTCGATGGGGGCTACAAAAGGGTCATAGTGTTCTTCCCAAGAGTACTAATGAAGTGAGGATCAAGGAGAACCTTGATGTGTTTGGCTGGTCTATCCCAGATGCCTTGTTCGCCAAGTTTTCTGAAATCGAGCAGGCAAGACTGATCAGAGGGGCCTCATTCGTTCATGATACTTTTGGTCCCTACAGGAGTTACGAGGAGTTCTGGGATGGTGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

316

Amino Acids

35.26

Weight (kDa)

6.72

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	130
AccII	CGCG	1 cut(s)	219
AccIII	TCCGGA	1 cut(s)	351
AciI	CCGC	4 cut(s)	5, 111, 122, 209
AclWI	GGATC	2 cut(s)	40, 794
AcoI	YGGCCR	1 cut(s)	344
AcvI	CACGTG	1 cut(s)	518
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	5 cut(s)	105, 253, 276, 332, 772
AfiI	CCNNNNNNNGG	2 cut(s)	56, 246
AflII	CTTAAG	1 cut(s)	665
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	2 cut(s)	200, 659
AjnI	CCWGG	3 cut(s)	68, 82, 634
AluBI	AGCT	5 cut(s)	28, 41, 461, 493, 574
AluI	AGCT	5 cut(s)	28, 41, 461, 493, 574
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	40, 794
AlwNI	CAGNNNCTG	1 cut(s)	692
Ama87I	CYCGRG	1 cut(s)	456
Aor13HI	TCCGGA	1 cut(s)	351
AoxI	GGCC	3 cut(s)	85, 344, 879
ApeKI	GCWGC	1 cut(s)	562
ArsI	GACNNNNNNTTYG	4 cut(s)	479, 511, 645, 677
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	3 cut(s)	66, 879, 905
AsuHPI	GGTGA	3 cut(s)	223, 596, 612
AvaI	CYCGRG	1 cut(s)	456
AvaII	GGWCC	2 cut(s)	66, 905
BalI	TGGCCA	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	632
BbrPI	CACGTG	1 cut(s)	518
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	574
BccI	CCATC	4 cut(s)	197, 558, 726, 929
BceAI	ACGGC	2 cut(s)	86, 172
BciT130I	CCWGG	3 cut(s)	70, 84, 636
BclI	TGATCA	2 cut(s)	256, 870
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	946
BfmI	CTRYAG	2 cut(s)	54, 910
BfrI	CTTAAG	1 cut(s)	665
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	2 cut(s)	111, 563
BlsI	GCNGC	2 cut(s)	112, 564
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	3 cut(s)	70, 84, 636
Bme18I	GGWCC	2 cut(s)	66, 905
BmeT110I	CYCGRG	1 cut(s)	456
BmgT120I	GGNCC	3 cut(s)	66, 879, 905
BmiI	GGNNCC	3 cut(s)	67, 880, 907
BmrFI	CCNGG	3 cut(s)	70, 84, 636
BmrI	ACTGGG	1 cut(s)	635
BmsI	GCATC	1 cut(s)	817
BmuI	ACTGGG	1 cut(s)	635
BsaAI	YACGTR	1 cut(s)	518
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	82, 594
BsaWI	WCCGGW	2 cut(s)	35, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 246
Bse1I	ACTGG	4 cut(s)	318, 347, 347, 630
Bse3DI	GCAATG	2 cut(s)	166, 432
BseAI	TCCGGA	1 cut(s)	351
BseBI	CCWGG	3 cut(s)	70, 84, 636
BseDI	CCNNGG	2 cut(s)	82, 594
BseGI	GGATG	4 cut(s)	360, 514, 550, 940
BseLI	CCNNNNNNNGG	2 cut(s)	56, 246
BseMI	GCAATG	2 cut(s)	166, 432
BseNI	ACTGG	4 cut(s)	318, 347, 347, 630
BseRI	GAGGAG	1 cut(s)	938
BseXI	GCAGC	1 cut(s)	574
BseYI	CCCAGC	1 cut(s)	409
BsgI	GTGCAG	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	87, 346, 881
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	456
BsiSI	CCGG	2 cut(s)	36, 352
BslFI	GGGAC	2 cut(s)	79, 891
BslI	CCNNNNNNNGG	2 cut(s)	56, 246
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	2 cut(s)	79, 891
BsnI	GGCC	3 cut(s)	87, 346, 881
BsoBI	CYCGRG	1 cut(s)	456
Bsp1286I	GDGCHC	2 cut(s)	148, 632
Bsp13I	TCCGGA	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	45, 256, 786, 870
BspACI	CCGC	4 cut(s)	5, 111, 122, 209
BspANI	GGCC	3 cut(s)	87, 346, 881
BspEI	TCCGGA	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	892
BspLI	GGNNCC	3 cut(s)	67, 880, 907
BspPI	GGATC	2 cut(s)	40, 794
BspQI	GCTCTTC	1 cut(s)	732
BspTI	CTTAAG	1 cut(s)	665
BsrDI	GCAATG	2 cut(s)	166, 432
BsrI	ACTGG	4 cut(s)	318, 347, 347, 630
BssECI	CCNNGG	2 cut(s)	82, 594
BssMI	GATC	4 cut(s)	45, 256, 786, 870
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	594
Bst2UI	CCWGG	3 cut(s)	70, 84, 636
Bst4CI	ACNGT	2 cut(s)	195, 688
Bst6I	CTCTTC	1 cut(s)	732
BstACI	GRCGYC	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	665
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstBAI	YACGTR	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	861
BstDEI	CTNAG	1 cut(s)	42
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	4 cut(s)	360, 514, 550, 940
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	4 cut(s)	48, 259, 789, 873
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	4 cut(s)	45, 256, 786, 870
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 107, 119, 571, 722, 836
BstNI	CCWGG	3 cut(s)	70, 84, 636
BstSCI	CCNGG	3 cut(s)	68, 82, 634
BstSFI	CTRYAG	2 cut(s)	54, 910
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	574
BstX2I	RGATCY	1 cut(s)	45
BstXI	CCANNNNNNTGG	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	3 cut(s)	87, 346, 881
BtsCI	GGATG	4 cut(s)	360, 514, 550, 940
BtsIMutI	CAGTG	2 cut(s)	340, 623
Cac8I	GCNNGC	1 cut(s)	861
CaiI	CAGNNNCTG	1 cut(s)	692
CciI	TCATGA	1 cut(s)	892
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	3 cut(s)	66, 879, 905
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	5 cut(s)	104, 252, 275, 331, 771
CviAII	CATG	3 cut(s)	260, 645, 893
CviQI	GTAC	5 cut(s)	104, 252, 275, 331, 771
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	4 cut(s)	47, 258, 788, 872
DpnII	GATC	4 cut(s)	45, 256, 786, 870
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	732
EarI	CTCTTC	1 cut(s)	732
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	632
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	66, 905
Eco72I	CACGTG	1 cut(s)	518
Eco88I	CYCGRG	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	2 cut(s)	66, 879
EcoRII	CCWGG	3 cut(s)	68, 82, 634
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	3 cut(s)	263, 648, 896
FaiI	YATR	9 cut(s)	135, 261, 321, 338, 441, 559, 646, 753, 894
FalI	AAGNNNNNCTT	2 cut(s)	711, 743
FaqI	GGGAC	2 cut(s)	79, 891
FatI	CATG	3 cut(s)	259, 644, 892
FauI	CCCGC	1 cut(s)	115
FbaI	TGATCA	2 cut(s)	256, 870
FblI	GTMKAC	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	111, 563
FokI	GGATG	3 cut(s)	367, 521, 537
FriOI	GRGCYC	1 cut(s)	632
Fsp4HI	GCNGC	2 cut(s)	111, 563
FspBI	CTAG	1 cut(s)	946
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	2 cut(s)	111, 563
GsaI	CCCAGC	1 cut(s)	413
HaeIII	GGCC	3 cut(s)	87, 346, 881
HapII	CCGG	2 cut(s)	36, 352
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	263, 648, 896
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HincII	GTYRAC	3 cut(s)	131, 325, 535
HindII	GTYRAC	3 cut(s)	131, 325, 535
HinfI	GANTC	3 cut(s)	443, 670, 676
HpaII	CCGG	2 cut(s)	36, 352
HphI	GGTGA	3 cut(s)	223, 596, 612
Hpy166II	GTNNAC	6 cut(s)	106, 131, 252, 325, 535, 604
Hpy188I	TCNGA	5 cut(s)	499, 675, 684, 850, 875
Hpy188III	TCNNGA	4 cut(s)	266, 352, 612, 893
Hpy8I	GTNNAC	6 cut(s)	106, 131, 252, 325, 535, 604
Hpy99I	CGWCG	2 cut(s)	95, 101
HpyAV	CCTTC	2 cut(s)	60, 160
HpyCH4III	ACNGT	2 cut(s)	195, 688
HpyCH4IV	ACGT	2 cut(s)	517, 577
HpyCH4V	TGCA	4 cut(s)	310, 474, 515, 716
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 107, 119, 571, 722, 836
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	2 cut(s)	517, 577
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	263, 648, 896
HspAI	GCGC	1 cut(s)	217
Kpn2I	TCCGGA	1 cut(s)	351
Ksp22I	TGATCA	2 cut(s)	256, 870
Kzo9I	GATC	4 cut(s)	45, 256, 786, 870
LguI	GCTCTTC	1 cut(s)	732
LmnI	GCTCC	2 cut(s)	38, 268
Lsp1109I	GCAGC	1 cut(s)	574
LweI	GCATC	1 cut(s)	817
MaeI	CTAG	1 cut(s)	946
MaeII	ACGT	2 cut(s)	517, 577
MaeIII	GTNAC	1 cut(s)	917
MalI	GATC	4 cut(s)	47, 258, 788, 872
MboI	GATC	4 cut(s)	45, 256, 786, 870
MboII	GAAGA	7 cut(s)	13, 212, 281, 370, 671, 719, 752
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	2 cut(s)	148, 632
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	3 cut(s)	149, 475, 698
MluNI	TGGCCA	1 cut(s)	346
Mox20I	TGGCCA	1 cut(s)	346
MroI	TCCGGA	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	2 cut(s)	378, 666
Msp20I	TGGCCA	1 cut(s)	346
MspA1I	CMGCKG	1 cut(s)	113
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	2 cut(s)	36, 352
MspR9I	CCNGG	3 cut(s)	70, 84, 636
MvaI	CCWGG	3 cut(s)	70, 84, 636
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	6 cut(s)	93, 107, 119, 571, 722, 836
NdeII	GATC	4 cut(s)	45, 256, 786, 870
NlaIII	CATG	3 cut(s)	263, 648, 896
NlaIV	GGNNCC	3 cut(s)	67, 880, 907
PaeR7I	CTCGAG	1 cut(s)	456
PagI	TCATGA	1 cut(s)	892
PciSI	GCTCTTC	1 cut(s)	732
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	443, 670, 676
PflMI	CCANNNNNTGG	1 cut(s)	246
PfoI	TCCNGGA	1 cut(s)	634
PkrI	GCNGC	2 cut(s)	112, 564
PmaCI	CACGTG	1 cut(s)	518
PmlI	CACGTG	1 cut(s)	518
Ppu21I	YACGTR	1 cut(s)	518
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	3 cut(s)	68, 82, 634
PspCI	CACGTG	1 cut(s)	518
PspFI	CCCAGC	1 cut(s)	409
PspGI	CCWGG	3 cut(s)	68, 82, 634
PspN4I	GGNNCC	3 cut(s)	67, 880, 907
PspPI	GGNCC	3 cut(s)	66, 879, 905
PspPPI	RGGWCCY	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	1 cut(s)	45
RsaI	GTAC	5 cut(s)	105, 253, 276, 332, 772
RsaNI	GTAC	5 cut(s)	104, 252, 275, 331, 771
SalI	GTCGAC	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	378, 666
SatI	GCNGC	2 cut(s)	111, 563
Sau3AI	GATC	4 cut(s)	45, 256, 786, 870
Sau96I	GGNCC	3 cut(s)	66, 879, 905
ScaI	AGTACT	1 cut(s)	772
ScrFI	CCNGG	3 cut(s)	70, 84, 636
SduI	GDGCHC	2 cut(s)	148, 632
SfaNI	GCATC	1 cut(s)	817
SfcI	CTRYAG	2 cut(s)	54, 910
Sfr274I	CTCGAG	1 cut(s)	456
SinI	GGWCC	2 cut(s)	66, 905
SlaI	CTCGAG	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	456, 665
SmoI	CTYRAG	2 cut(s)	456, 665
Sse9I	AATT	3 cut(s)	149, 475, 698
SsiI	CCGC	4 cut(s)	5, 111, 122, 209
SspMI	CTAG	1 cut(s)	946
StyD4I	CCNGG	3 cut(s)	68, 82, 634
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	2 cut(s)	195, 688
TaiI	ACGT	2 cut(s)	520, 580
TaqI	TCGA	5 cut(s)	24, 130, 457, 730, 855
TasI	AATT	3 cut(s)	149, 475, 698
TatI	WGTACW	2 cut(s)	251, 770
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	3 cut(s)	443, 670, 676
Tru1I	TTAA	2 cut(s)	378, 666
Tru9I	TTAA	2 cut(s)	378, 666
TscAI	CASTG	2 cut(s)	347, 630
TseI	GCWGC	1 cut(s)	562
TspDTI	ATGAA	3 cut(s)	371, 792, 881
TspRI	CASTG	2 cut(s)	347, 630
Van91I	CCANNNNNTGG	1 cut(s)	246
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	2 cut(s)	66, 905
XagI	CCTNNNNNAGG	1 cut(s)	54
XhoI	CTCGAG	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	130
XspI	CTAG	1 cut(s)	946
ZrmI	AGTACT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.