Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Reverse (-)

11875166 .. 11880339

Gene Structure 5174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG140100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCGGACGATATTCGTTTCTTTGAGTTGAACACCGGAGCCAAGATGCCTTCTTTGGGATTAGGGACCTGGCAGTCCAGCCCCGGCTTGGTCGGTGAAGCCGTCGCCACCGCCATCAAGGCAGGATATAGGCATATTGATTGTGCTCAAGCCTATGGCAACGAGAAAGAGATTGGTTTGGTTTTGAAGAAGCTGTTTGAAGATGGTGTGGTGAAGCGCGAAGAATTGTGGATTACCTCCAAGCTCTGGTGTACGGATCATGCCCCAGAAGATGTACCAGAGGCATTGGATAGGACTTTGAAAGACTTGCAGCTTGATTATGTTGACTTGTACTTGGTGTGTTCTGGAGTGTGTGCATATGGTTTATCAGATCATTCAGATGGCTTTAACATGATAAGTGTCATGCCTAGTTCAGGTTTCATCTGCATTCTTCAAAACATTTGGCAATATACCCTAAATCTTAACGTGGTTTTTGAATATAACTTTACATCCAAAGTTATTCATCCATTTATAGTAATGCTGTATGGCCAGACGGTGAATATCATAGATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00051 ko00052 ko00561 ko00790 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00051 map00052 map00561 map00790 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

184

Amino Acids

20.58

Weight (kDa)

4.68

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	19 - 113	2.5e-19	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccII	CGCG	1 cut(s)	219
AciI	CCGC	2 cut(s)	5, 111
AclWI	GGATC	1 cut(s)	264
AcoI	YGGCCR	1 cut(s)	526
AfaI	GTAC	3 cut(s)	253, 276, 332
AfiI	CCNNNNNNNGG	4 cut(s)	56, 88, 246, 413
AgsI	TTSAA	6 cut(s)	31, 187, 200, 301, 434, 476
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	3 cut(s)	193, 244, 313
AluI	AGCT	3 cut(s)	193, 244, 313
Alw21I	GWGCWC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	1 cut(s)	526
ApeKI	GCWGC	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	3 cut(s)	107, 223, 547
AvaII	GGWCC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	3 cut(s)	122, 197, 374
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	1 cut(s)	408
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	312
Bme1390I	CCNGG	2 cut(s)	70, 84
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	40, 67
BmrFI	CCNGG	2 cut(s)	70, 84
BmsI	GCATC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 88, 246, 413
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	2 cut(s)	488, 502
BseLI	CCNNNNNNNGG	4 cut(s)	56, 88, 246, 413
BseXI	GCAGC	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	528
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	36, 84
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	4 cut(s)	56, 88, 246, 413
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	1 cut(s)	528
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	256, 370
BspACI	CCGC	2 cut(s)	5, 111
BspANI	GGCC	1 cut(s)	528
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	40, 67
BspPI	GGATC	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	2 cut(s)	256, 370
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	535
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstF5I	GGATG	2 cut(s)	488, 502
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	2 cut(s)	259, 373
BstMBI	GATC	2 cut(s)	256, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	68, 82
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	488, 502
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	3 cut(s)	252, 275, 331
CviAII	CATG	3 cut(s)	260, 391, 403
CviQI	GTAC	3 cut(s)	252, 275, 331
DpnI	GATC	2 cut(s)	258, 372
DpnII	GATC	2 cut(s)	256, 370
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	526
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	66
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	68
FaeI	CATG	3 cut(s)	263, 394, 406
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	3 cut(s)	259, 390, 402
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	2 cut(s)	475, 489
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	1 cut(s)	311
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	528
HapII	CCGG	2 cut(s)	36, 84
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	3 cut(s)	263, 394, 406
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HpaII	CCGG	2 cut(s)	36, 84
HphI	GGTGA	3 cut(s)	107, 223, 547
Hpy166II	GTNNAC	2 cut(s)	252, 325
Hpy188I	TCNGA	2 cut(s)	370, 379
Hpy188III	TCNNGA	1 cut(s)	345
Hpy8I	GTNNAC	2 cut(s)	252, 325
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	3 cut(s)	310, 356, 426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	3 cut(s)	263, 394, 406
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	256, 370
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	465
MalI	GATC	2 cut(s)	258, 372
MboI	GATC	2 cut(s)	256, 370
MboII	GAAGA	5 cut(s)	199, 212, 233, 281, 422
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	528
MluCI	AATT	2 cut(s)	224, 550
MluNI	TGGCCA	1 cut(s)	528
MnlI	CCTC	2 cut(s)	247, 274
Mox20I	TGGCCA	1 cut(s)	528
MscI	TGGCCA	1 cut(s)	528
MseI	TTAA	2 cut(s)	387, 462
MslI	CAYNNNNRTG	1 cut(s)	378
Msp20I	TGGCCA	1 cut(s)	528
MspI	CCGG	2 cut(s)	36, 84
MspR9I	CCNGG	2 cut(s)	70, 84
Mva1269I	GAATGC	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	70
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	84
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	2 cut(s)	256, 370
NlaIII	CATG	3 cut(s)	263, 394, 406
NlaIV	GGNNCC	2 cut(s)	40, 67
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	426
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	312
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	40, 67
PspPI	GGNCC	1 cut(s)	66
PspPPI	RGGWCCY	1 cut(s)	66
RsaI	GTAC	3 cut(s)	253, 276, 332
RsaNI	GTAC	3 cut(s)	252, 275, 331
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	387, 462
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	2 cut(s)	256, 370
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	2 cut(s)	70, 84
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	7 cut(s)	71, 195, 239, 246, 315, 418, 468
SfaNI	GCATC	1 cut(s)	36
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
Sse9I	AATT	2 cut(s)	224, 550
SsiI	CCGC	2 cut(s)	5, 111
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	2 cut(s)	68, 82
TaaI	ACNGT	1 cut(s)	535
TaiI	ACGT	1 cut(s)	468
TasI	AATT	2 cut(s)	224, 550
TatI	WGTACW	1 cut(s)	330
Tru1I	TTAA	2 cut(s)	387, 462
Tru9I	TTAA	2 cut(s)	387, 462
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	409, 491
TspGWI	ACGGA	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	66
XagI	CCTNNNNNAGG	1 cut(s)	411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.