Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Reverse (-)

12112938 .. 12113937

Gene Structure 1000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG141600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAAGAAGGGTGCAGTCGGTTTTAAGCCTGAAAACCTTGTCGAACCAGATATCCCTGGTACTTGGAGAGCAATGGAAACTCTCTATGATTCGTGCAAGGCTCGAGCTATTGGTCTGAGCAATTTCGCTACAAAGAAGCTGTCAGATTTGCTGGATGTGGCACGTGTCCCTCCTGCTGTTGACCAAGTGGAGTGCCATCCTTCATGGCAGCAGACCAAGCTGCGATCCTTCTGCAAATCCAAGGGGGTTCACCTTTCTGGATATTCACCACTGGGTTCTCCTGGCACAACATGGATCAAAAGTGATGTCCTTAAGAATCCGATTCTTCTCAGCGTTGCAGAGAAGCTAGGCAAAACTCCTGCTCAAGTTGCTCTTCGATGGGGACTGCAAATGGGTCATAGCGTTGTTCCAAAGAGTACTAATGAAGCAAGGATCAAGGAGAATCTCGATGTCTTTGGCTGGTCTATCCCAGAGGACTTGTTTGCCAAGTTTTCTGAAATTGAGCAGGCAAGGCTGATTAGAGGGAACTCATTTGTTCATGACACTTTTGGACCCTATAGAAGTGTTGAAGAACTATGGGATGGTGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

197

Amino Acids

21.88

Weight (kDa)

8.39

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	18 - 167	1e-23	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	219, 302, 440
AcvI	CACGTG	1 cut(s)	164
AfaI	GTAC	2 cut(s)	61, 418
AflII	CTTAAG	1 cut(s)	311
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	569
AjnI	CCWGG	2 cut(s)	55, 280
AloI	GAACNNNNNNTCC	2 cut(s)	36, 68
AluBI	AGCT	4 cut(s)	107, 139, 220, 346
AluI	AGCT	4 cut(s)	107, 139, 220, 346
AlwI	GGATC	3 cut(s)	219, 302, 440
Ama87I	CYCGRG	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	208, 220
ArsI	GACNNNNNNTTYG	4 cut(s)	125, 157, 291, 323
AspS9I	GGNCC	1 cut(s)	551
AsuHPI	GGTGA	2 cut(s)	242, 258
AvaI	CYCGRG	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	551
BbrPI	CACGTG	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	207, 220
BccI	CCATC	3 cut(s)	204, 372, 575
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BciT130I	CCWGG	2 cut(s)	57, 282
BfaI	CTAG	2 cut(s)	347, 592
BfmI	CTRYAG	1 cut(s)	556
BfrI	CTTAAG	1 cut(s)	311
BisI	GCNGC	2 cut(s)	209, 221
BlsI	GCNGC	2 cut(s)	210, 222
BmcAI	AGTACT	1 cut(s)	418
Bme1390I	CCNGG	2 cut(s)	57, 282
Bme18I	GGWCC	1 cut(s)	551
BmeT110I	CYCGRG	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	1 cut(s)	553
BmrFI	CCNGG	2 cut(s)	57, 282
BmrI	ACTGGG	1 cut(s)	281
BmuI	ACTGGG	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	55, 240
Bse1I	ACTGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	57, 282
BseDI	CCNNGG	2 cut(s)	55, 240
BseGI	GGATG	3 cut(s)	160, 196, 586
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	107, 343
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	207, 220
BsgI	GTGCAG	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	152, 396
BsmFI	GGGAC	2 cut(s)	152, 396
BsoBI	CYCGRG	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	224, 294, 432
BspCNI	CTCAG	2 cut(s)	108, 342
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	553
BspPI	GGATC	3 cut(s)	219, 302, 440
BspQI	GCTCTTC	1 cut(s)	378
BspTI	CTTAAG	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	55, 240
BssMI	GATC	3 cut(s)	224, 294, 432
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	57, 282
Bst6I	CTCTTC	1 cut(s)	378
BstAFI	CTTAAG	1 cut(s)	311
BstBAI	YACGTR	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	116, 329
BstF5I	GGATG	3 cut(s)	160, 196, 586
BstKTI	GATC	3 cut(s)	227, 297, 435
BstMBI	GATC	3 cut(s)	224, 294, 432
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 368, 511
BstNI	CCWGG	2 cut(s)	57, 282
BstSCI	CCNGG	2 cut(s)	55, 280
BstSFI	CTRYAG	1 cut(s)	556
BstV1I	GCAGC	2 cut(s)	207, 220
BtsCI	GGATG	3 cut(s)	160, 196, 586
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	507
CciI	TCATGA	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	551
Csp6I	GTAC	2 cut(s)	60, 417
CviAII	CATG	3 cut(s)	204, 291, 539
CviJI	RGCY	8 cut(s)	28, 101, 107, 139, 220, 346, 459, 514
CviKI_1	RGCY	8 cut(s)	28, 101, 107, 139, 220, 346, 459, 514
CviQI	GTAC	2 cut(s)	60, 417
DdeI	CTNAG	2 cut(s)	116, 329
DpnI	GATC	3 cut(s)	226, 296, 434
DpnII	GATC	3 cut(s)	224, 294, 432
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	551
Eco72I	CACGTG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	102
EcoRII	CCWGG	2 cut(s)	55, 280
EcoRV	GATATC	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	3 cut(s)	207, 294, 542
FaiI	YATR	7 cut(s)	87, 205, 292, 399, 540, 558, 577
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	2 cut(s)	152, 396
FatI	CATG	3 cut(s)	203, 290, 538
Fnu4HI	GCNGC	2 cut(s)	209, 221
FokI	GGATG	2 cut(s)	167, 183
Fsp4HI	GCNGC	2 cut(s)	209, 221
FspBI	CTAG	2 cut(s)	347, 592
GluI	GCNGC	2 cut(s)	209, 221
Hin1II	CATG	3 cut(s)	207, 294, 542
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	4 cut(s)	89, 316, 322, 442
HphI	GGTGA	2 cut(s)	242, 258
Hpy166II	GTNNAC	2 cut(s)	181, 250
Hpy188I	TCNGA	4 cut(s)	117, 145, 321, 496
Hpy188III	TCNNGA	3 cut(s)	258, 446, 539
Hpy8I	GTNNAC	2 cut(s)	181, 250
HpyAV	CCTTC	2 cut(s)	210, 238
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	5 cut(s)	14, 96, 234, 338, 388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 368, 511
HpyF3I	CTNAG	2 cut(s)	116, 329
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	3 cut(s)	207, 294, 542
Kzo9I	GATC	3 cut(s)	224, 294, 432
LguI	GCTCTTC	1 cut(s)	378
Lsp1109I	GCAGC	2 cut(s)	207, 220
MaeI	CTAG	2 cut(s)	347, 592
MaeII	ACGT	1 cut(s)	163
MalI	GATC	3 cut(s)	226, 296, 434
MboI	GATC	3 cut(s)	224, 294, 432
MboII	GAAGA	4 cut(s)	16, 317, 365, 581
MluCI	AATT	2 cut(s)	121, 498
MnlI	CCTC	3 cut(s)	180, 466, 515
MseI	TTAA	2 cut(s)	24, 312
MspCI	CTTAAG	1 cut(s)	311
MspR9I	CCNGG	2 cut(s)	57, 282
MvaI	CCWGG	2 cut(s)	57, 282
MwoI	GCNNNNNNNGC	3 cut(s)	217, 368, 511
NdeII	GATC	3 cut(s)	224, 294, 432
NlaIII	CATG	3 cut(s)	207, 294, 542
NlaIV	GGNNCC	1 cut(s)	553
PaeR7I	CTCGAG	1 cut(s)	102
PagI	TCATGA	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	378
PfeI	GAWTC	4 cut(s)	89, 316, 322, 442
PkrI	GCNGC	2 cut(s)	210, 222
PmaCI	CACGTG	1 cut(s)	164
PmlI	CACGTG	1 cut(s)	164
Ppu21I	YACGTR	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	55, 280
PspCI	CACGTG	1 cut(s)	164
PspGI	CCWGG	2 cut(s)	55, 280
PspN4I	GGNNCC	1 cut(s)	553
PspPI	GGNCC	1 cut(s)	551
PspXI	VCTCGAGB	1 cut(s)	102
RsaI	GTAC	2 cut(s)	61, 418
RsaNI	GTAC	2 cut(s)	60, 417
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	24, 312
SatI	GCNGC	2 cut(s)	209, 221
Sau3AI	GATC	3 cut(s)	224, 294, 432
Sau96I	GGNCC	1 cut(s)	551
ScaI	AGTACT	1 cut(s)	418
ScrFI	CCNGG	2 cut(s)	57, 282
SetI	ASST	7 cut(s)	39, 109, 141, 166, 222, 255, 348
SfcI	CTRYAG	1 cut(s)	556
Sfr274I	CTCGAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	551
SlaI	CTCGAG	1 cut(s)	102
SmlI	CTYRAG	3 cut(s)	102, 311, 363
SmoI	CTYRAG	3 cut(s)	102, 311, 363
Sse9I	AATT	2 cut(s)	121, 498
SspMI	CTAG	2 cut(s)	347, 592
StyD4I	CCNGG	2 cut(s)	55, 280
StyI	CCWWGG	1 cut(s)	240
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	4 cut(s)	42, 103, 376, 447
TasI	AATT	2 cut(s)	121, 498
TatI	WGTACW	1 cut(s)	416
TfiI	GAWTC	4 cut(s)	89, 316, 322, 442
Tru1I	TTAA	2 cut(s)	24, 312
Tru9I	TTAA	2 cut(s)	24, 312
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	2 cut(s)	208, 220
TspDTI	ATGAA	4 cut(s)	17, 192, 438, 527
TspRI	CASTG	1 cut(s)	276
Vha464I	CTTAAG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	551
XhoI	CTCGAG	1 cut(s)	102
XspI	CTAG	2 cut(s)	347, 592
ZrmI	AGTACT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.