Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Reverse (-)

12070191 .. 12071739

Gene Structure 1549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43139

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCGGACGATATTCGTTTCTTTGAGTTGAACACCGGAGCCAAGATGCCTTCTTTGGGATTAGGGACCTGGCAGTCCAGCCCCGGCTTGGTCGGTGAAGCCGTCGCCACCGCCATCAAGGCAGGATATAGGCATATTGATTGTGCTCAAGCCTATGGCAACGAGAAAGAGATTGGTTTGGTTTTGAAGAAGCTGTTTGAAGATGGTGTGGTGAAGCGCGAAGAATTGTGGATTACCTCCAAGCTCTGGTGTACGGATCATGCCCCAGAAGATGTACCAGAGGCATTGGATAGGACTTTGAAAGACTTGCAGCTTGATTATGTTGACTTGTACTTGGTGTGTTCTGGAGTGTGTGCATATGGTTTATCAGATCATTCAGATGGCTTTAACATGATAAGTGTCATGCCTAGTTCAGTGCGGATGAAGAAGGGTGCAGTCGGTTTTAAGCCTGAAAACCTTGTTGAACCAGATATCCCTGGTACTTGGAGAGCAATGGAAACTCTCTTTGATTCGTGCAAGGCTCGAGCTATTGGTCTGAGCAATTTTGCTACAAAGAAGCTGTCAGATTTGCTGGATGTGGCACGTGTCCCTCCTGCTGTTGACCAAGTGGAGTGCCATCCTTCATATATGGCAACAGACCAAGCTGCGATCCTTCTGCAAATCCAAGGGGGTTCACCTTTCTGGATATTCACCACTGGGTTCTCCTGGCACAACATGGATCAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

242

Amino Acids

26.68

Weight (kDa)

5.03

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	19 - 208	1e-27	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccII	CGCG	1 cut(s)	219
AciI	CCGC	3 cut(s)	5, 111, 418
AclWI	GGATC	3 cut(s)	264, 643, 726
AcvI	CACGTG	1 cut(s)	584
AfaI	GTAC	4 cut(s)	253, 276, 332, 481
AfiI	CCNNNNNNNGG	3 cut(s)	56, 88, 246
AflIII	ACRYGT	1 cut(s)	583
AgsI	TTSAA	5 cut(s)	31, 187, 200, 301, 464
AjnI	CCWGG	3 cut(s)	68, 475, 704
AloI	GAACNNNNNNTCC	2 cut(s)	456, 488
AluBI	AGCT	6 cut(s)	193, 244, 313, 527, 559, 644
AluI	AGCT	6 cut(s)	193, 244, 313, 527, 559, 644
Alw21I	GWGCWC	1 cut(s)	148
AlwI	GGATC	3 cut(s)	264, 643, 726
Ama87I	CYCGRG	1 cut(s)	522
ApeKI	GCWGC	2 cut(s)	310, 644
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	4 cut(s)	107, 223, 666, 682
AvaI	CYCGRG	1 cut(s)	522
AvaII	GGWCC	1 cut(s)	66
BbrPI	CACGTG	1 cut(s)	584
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	322, 631
BccI	CCATC	4 cut(s)	122, 197, 374, 624
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	637, 671
BciT130I	CCWGG	3 cut(s)	70, 477, 706
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	1 cut(s)	408
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	2 cut(s)	311, 645
BlsI	GCNGC	2 cut(s)	312, 646
Bme1390I	CCNGG	4 cut(s)	70, 84, 477, 706
Bme18I	GGWCC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	522
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	40, 67
BmrFI	CCNGG	4 cut(s)	70, 84, 477, 706
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	705
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	84
BsaAI	YACGTR	1 cut(s)	584
BsaJI	CCNNGG	3 cut(s)	82, 475, 664
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 88, 246
Bse1I	ACTGG	1 cut(s)	700
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	3 cut(s)	70, 477, 706
BseDI	CCNNGG	3 cut(s)	82, 475, 664
BseGI	GGATG	3 cut(s)	426, 580, 616
BseLI	CCNNNNNNNGG	3 cut(s)	56, 88, 246
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	1 cut(s)	700
BseXI	GCAGC	2 cut(s)	322, 631
BsgI	GTGCAG	1 cut(s)	453
Bsh1236I	CGCG	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	522
BsiSI	CCGG	2 cut(s)	36, 84
BslFI	GGGAC	2 cut(s)	79, 572
BslI	CCNNNNNNNGG	3 cut(s)	56, 88, 246
BsmFI	GGGAC	2 cut(s)	79, 572
BsoBI	CYCGRG	1 cut(s)	522
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	256, 370, 648, 718
BspACI	CCGC	3 cut(s)	5, 111, 418
BspCNI	CTCAG	1 cut(s)	528
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	40, 67
BspPI	GGATC	3 cut(s)	264, 643, 726
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	700
BssECI	CCNNGG	3 cut(s)	82, 475, 664
BssMI	GATC	4 cut(s)	256, 370, 648, 718
BssT1I	CCWWGG	1 cut(s)	664
Bst2UI	CCWGG	3 cut(s)	70, 477, 706
BstBAI	YACGTR	1 cut(s)	584
BstDEI	CTNAG	1 cut(s)	536
BstF5I	GGATG	3 cut(s)	426, 580, 616
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	4 cut(s)	259, 373, 651, 721
BstMBI	GATC	4 cut(s)	256, 370, 648, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	3 cut(s)	70, 477, 706
BstSCI	CCNGG	4 cut(s)	68, 82, 475, 704
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	322, 631
BtsCI	GGATG	3 cut(s)	426, 580, 616
BtsIMutI	CAGTG	2 cut(s)	420, 693
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	4 cut(s)	252, 275, 331, 480
CviAII	CATG	4 cut(s)	260, 391, 403, 715
CviQI	GTAC	4 cut(s)	252, 275, 331, 480
DdeI	CTNAG	1 cut(s)	536
DpnI	GATC	4 cut(s)	258, 372, 650, 720
DpnII	GATC	4 cut(s)	256, 370, 648, 718
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	664
Eco32I	GATATC	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	66
Eco72I	CACGTG	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	522
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	3 cut(s)	68, 475, 704
EcoRV	GATATC	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	664
ErhI	CCWWGG	1 cut(s)	664
FaeI	CATG	4 cut(s)	263, 394, 406, 718
FaqI	GGGAC	2 cut(s)	79, 572
FatI	CATG	4 cut(s)	259, 390, 402, 714
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	311, 645
FokI	GGATG	3 cut(s)	433, 587, 603
Fsp4HI	GCNGC	2 cut(s)	311, 645
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	2 cut(s)	311, 645
GsuI	CTGGAG	1 cut(s)	366
HapII	CCGG	2 cut(s)	36, 84
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	4 cut(s)	263, 394, 406, 718
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HincII	GTYRAC	2 cut(s)	325, 601
HindII	GTYRAC	2 cut(s)	325, 601
HinfI	GANTC	1 cut(s)	509
HpaII	CCGG	2 cut(s)	36, 84
HphI	GGTGA	4 cut(s)	107, 223, 666, 682
Hpy166II	GTNNAC	4 cut(s)	252, 325, 601, 674
Hpy188I	TCNGA	4 cut(s)	370, 379, 537, 565
Hpy188III	TCNNGA	2 cut(s)	345, 682
Hpy8I	GTNNAC	4 cut(s)	252, 325, 601, 674
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	4 cut(s)	60, 421, 630, 662
HpyCH4IV	ACGT	1 cut(s)	583
HpyCH4V	TGCA	5 cut(s)	310, 356, 434, 516, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	536
HpySE526I	ACGT	1 cut(s)	583
Hsp92II	CATG	4 cut(s)	263, 394, 406, 718
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	4 cut(s)	256, 370, 648, 718
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	2 cut(s)	322, 631
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	583
MalI	GATC	4 cut(s)	258, 372, 650, 720
MboI	GATC	4 cut(s)	256, 370, 648, 718
MboII	GAAGA	5 cut(s)	199, 212, 233, 281, 436
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	2 cut(s)	224, 541
MnlI	CCTC	3 cut(s)	247, 274, 600
MseI	TTAA	2 cut(s)	387, 444
MslI	CAYNNNNRTG	1 cut(s)	378
MspI	CCGG	2 cut(s)	36, 84
MspR9I	CCNGG	4 cut(s)	70, 84, 477, 706
MvaI	CCWGG	3 cut(s)	70, 477, 706
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	84
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	4 cut(s)	256, 370, 648, 718
NlaIII	CATG	4 cut(s)	263, 394, 406, 718
NlaIV	GGNNCC	2 cut(s)	40, 67
PaeR7I	CTCGAG	1 cut(s)	522
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	509
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	2 cut(s)	312, 646
PmaCI	CACGTG	1 cut(s)	584
PmlI	CACGTG	1 cut(s)	584
Ppu21I	YACGTR	1 cut(s)	584
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	3 cut(s)	68, 475, 704
PspCI	CACGTG	1 cut(s)	584
PspGI	CCWGG	3 cut(s)	68, 475, 704
PspN4I	GGNNCC	2 cut(s)	40, 67
PspPI	GGNCC	1 cut(s)	66
PspPPI	RGGWCCY	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	522
RsaI	GTAC	4 cut(s)	253, 276, 332, 481
RsaNI	GTAC	4 cut(s)	252, 275, 331, 480
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	387, 444
SatI	GCNGC	2 cut(s)	311, 645
Sau3AI	GATC	4 cut(s)	256, 370, 648, 718
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	4 cut(s)	70, 84, 477, 706
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	36
Sfr274I	CTCGAG	1 cut(s)	522
SinI	GGWCC	1 cut(s)	66
SlaI	CTCGAG	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	2 cut(s)	147, 522
SmoI	CTYRAG	2 cut(s)	147, 522
Sse9I	AATT	2 cut(s)	224, 541
SsiI	CCGC	3 cut(s)	5, 111, 418
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	4 cut(s)	68, 82, 475, 704
StyI	CCWWGG	1 cut(s)	664
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	1 cut(s)	523
TasI	AATT	2 cut(s)	224, 541
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	2 cut(s)	387, 444
Tru9I	TTAA	2 cut(s)	387, 444
TscAI	CASTG	2 cut(s)	420, 700
TseI	GCWGC	2 cut(s)	310, 644
TspDTI	ATGAA	2 cut(s)	437, 612
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	2 cut(s)	420, 700
Van91I	CCANNNNNTGG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	522
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.