Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Forward (+)

25225212 .. 25228001

Gene Structure 2790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G261900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGTACGATATTCGTTTCTTTGAGCTGAACACCGGAGCTAAGATCCCTTCCGTAGGGTTAGGGACCTGGCAATCAAGCCCTGGCCTCGTCGGCGACGCCGTCGACGCCGCCATCAAGGCAGGATATCGGCATATTGATTGTGCTCAACTCTATGCCAATGAGAAGGAGATTGGTTCTGTTCTGAAGAAGCTATTTGAAGATGGTGTGGTGAAGCGTGAGGATTTGTGGATTACTTCCAAACTCTGGTGTACTGATCATGCACCAGAAGATGTACCAGAGGCATTGGACAGGACTTTGAGAGACTTGCAGCTCGATTGTGTTGACTTGTATCTTATACACTGGCCAGCCAGGATGAAGAAGGGGTCAGTAGGTTTTAAGCATGAAAACCTTATTGACCCAGATATCCCTGCAACTTGGAGAGCAATGGAATCACTCTATGATTCGGGCAAGGCTCGAGCTATTGGCGTGAGCAATTTCTCTACAAAGAAGCTGTCAGATTTGCTGGATATTGCACGTATTCCTCCTGCTGTTGACCAAGTGGAGTGTCATCCTTCATGGCAGCAGGCCAAGCTGCGTTCTTTCTGTAAATCCAAGGGAGTTCACCTTTCTGGATATTCGCCACTGGGTTCTCCTGGAACAACATGGATTAAAAGTGAAGTCCTTAAGAATCCAATTCTTCTCACTGTTGCAGAGAAATTAGGCAAAACTCCTGCACAAGTTGCTCTTAGATGGGGACTGCAAATGGGTCATAGTGTTCTTCCTAAGAGTACTAATGAAGCAAGGATCAAGGAGAACCTTGATGTCTTTGGCTGGTCTATCCCAGAGGACTTGTTTCCCAAGTTTTCTGAAATTGAGCAGGCAAGGCTGATCAGAGGGGGCTCGTATGTTCATGATACTTTTGGTCCCTACAGGAGCATAGAGGAGTTCTGGGATGGTGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

316

Amino Acids

35.22

Weight (kDa)

6.09

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	2 cut(s)	40, 794
AcoI	YGGCCR	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	206
AcyI	GRCGYC	2 cut(s)	99, 108
AfaI	GTAC	4 cut(s)	8, 253, 276, 772
AfiI	CCNNNNNNNGG	2 cut(s)	56, 246
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	1 cut(s)	200
AjnI	CCWGG	4 cut(s)	68, 82, 350, 634
AluBI	AGCT	7 cut(s)	28, 41, 193, 313, 461, 493, 574
AluI	AGCT	7 cut(s)	28, 41, 193, 313, 461, 493, 574
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	40, 794
Ama87I	CYCGRG	1 cut(s)	456
AoxI	GGCC	3 cut(s)	85, 344, 567
ApeKI	GCWGC	3 cut(s)	310, 562, 574
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
AspS9I	GGNCC	2 cut(s)	66, 905
AsuHPI	GGTGA	2 cut(s)	223, 596
AvaI	CYCGRG	1 cut(s)	456
AvaII	GGWCC	2 cut(s)	66, 905
BalI	TGGCCA	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	884
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	3 cut(s)	322, 561, 574
BccI	CCATC	4 cut(s)	122, 197, 726, 929
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	4 cut(s)	70, 84, 352, 636
BclI	TGATCA	2 cut(s)	256, 870
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	946
BfmI	CTRYAG	1 cut(s)	910
BfrI	CTTAAG	1 cut(s)	665
BglI	GCCNNNNNGGC	2 cut(s)	93, 119
BisI	GCNGC	4 cut(s)	111, 311, 563, 575
BlsI	GCNGC	4 cut(s)	112, 312, 564, 576
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	4 cut(s)	70, 84, 352, 636
Bme18I	GGWCC	2 cut(s)	66, 905
BmeT110I	CYCGRG	1 cut(s)	456
BmgT120I	GGNCC	2 cut(s)	66, 905
BmiI	GGNNCC	2 cut(s)	67, 907
BmrFI	CCNGG	4 cut(s)	70, 84, 352, 636
BmrI	ACTGGG	1 cut(s)	635
BmuI	ACTGGG	1 cut(s)	635
BsaAI	YACGTR	1 cut(s)	518
BsaHI	GRCGYC	2 cut(s)	99, 108
BsaJI	CCNNGG	2 cut(s)	82, 594
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 246
Bse1I	ACTGG	2 cut(s)	347, 630
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	4 cut(s)	70, 84, 352, 636
BseDI	CCNNGG	2 cut(s)	82, 594
BseGI	GGATG	3 cut(s)	360, 550, 940
BseLI	CCNNNNNNNGG	2 cut(s)	56, 246
BseMI	GCAATG	1 cut(s)	432
BseNI	ACTGG	2 cut(s)	347, 630
BseRI	GAGGAG	1 cut(s)	938
BseXI	GCAGC	3 cut(s)	322, 561, 574
BsgI	GTGCAG	1 cut(s)	699
BshFI	GGCC	3 cut(s)	87, 346, 569
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	456
BsiSI	CCGG	1 cut(s)	36
BsiWI	CGTACG	1 cut(s)	6
BslFI	GGGAC	3 cut(s)	79, 750, 891
BslI	CCNNNNNNNGG	2 cut(s)	56, 246
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	3 cut(s)	79, 750, 891
BsnI	GGCC	3 cut(s)	87, 346, 569
BsoBI	CYCGRG	1 cut(s)	456
Bsp1286I	GDGCHC	2 cut(s)	148, 884
Bsp143I	GATC	4 cut(s)	45, 256, 786, 870
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	3 cut(s)	87, 346, 569
BspHI	TCATGA	1 cut(s)	892
BspLI	GGNNCC	2 cut(s)	67, 907
BspPI	GGATC	2 cut(s)	40, 794
BspTI	CTTAAG	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	2 cut(s)	347, 630
BssECI	CCNNGG	2 cut(s)	82, 594
BssMI	GATC	4 cut(s)	45, 256, 786, 870
BssNI	GRCGYC	2 cut(s)	99, 108
BssT1I	CCWWGG	1 cut(s)	594
Bst2UI	CCWGG	4 cut(s)	70, 84, 352, 636
Bst4CI	ACNGT	1 cut(s)	688
BstACI	GRCGYC	2 cut(s)	99, 108
BstAFI	CTTAAG	1 cut(s)	665
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstBAI	YACGTR	1 cut(s)	518
BstC8I	GCNNGC	3 cut(s)	348, 567, 861
BstDEI	CTNAG	3 cut(s)	42, 728, 765
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	3 cut(s)	360, 550, 940
BstKTI	GATC	4 cut(s)	48, 259, 789, 873
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	4 cut(s)	45, 256, 786, 870
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 107, 119, 571, 722, 865
BstNI	CCWGG	4 cut(s)	70, 84, 352, 636
BstSCI	CCNGG	4 cut(s)	68, 82, 350, 634
BstSFI	CTRYAG	1 cut(s)	910
BstV1I	GCAGC	3 cut(s)	322, 561, 574
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	3 cut(s)	87, 346, 569
BtsCI	GGATG	3 cut(s)	360, 550, 940
BtsIMutI	CAGTG	3 cut(s)	340, 623, 684
Cac8I	GCNNGC	3 cut(s)	348, 567, 861
CciI	TCATGA	1 cut(s)	892
Cfr13I	GGNCC	2 cut(s)	66, 905
CseI	GACGC	2 cut(s)	107, 116
Csp6I	GTAC	4 cut(s)	7, 252, 275, 771
CviAII	CATG	5 cut(s)	260, 383, 558, 645, 893
CviQI	GTAC	4 cut(s)	7, 252, 275, 771
DdeI	CTNAG	3 cut(s)	42, 728, 765
DpnI	GATC	4 cut(s)	47, 258, 788, 872
DpnII	GATC	4 cut(s)	45, 256, 786, 870
EaeI	YGGCCR	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	884
Eco32I	GATATC	2 cut(s)	128, 406
Eco47I	GGWCC	2 cut(s)	66, 905
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	4 cut(s)	68, 82, 350, 634
EcoRV	GATATC	2 cut(s)	128, 406
EcoT14I	CCWWGG	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	884
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	5 cut(s)	263, 386, 561, 648, 896
FalI	AAGNNNNNCTT	2 cut(s)	711, 743
FaqI	GGGAC	3 cut(s)	79, 750, 891
FatI	CATG	5 cut(s)	259, 382, 557, 644, 892
FbaI	TGATCA	2 cut(s)	256, 870
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	111, 311, 563, 575
FokI	GGATG	2 cut(s)	367, 537
FriOI	GRGCYC	1 cut(s)	884
Fsp4HI	GCNGC	4 cut(s)	111, 311, 563, 575
FspBI	CTAG	1 cut(s)	946
GluI	GCNGC	4 cut(s)	111, 311, 563, 575
HaeIII	GGCC	3 cut(s)	87, 346, 569
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	2 cut(s)	107, 116
Hin1I	GRCGYC	2 cut(s)	99, 108
Hin1II	CATG	5 cut(s)	263, 386, 561, 648, 896
HincII	GTYRAC	3 cut(s)	106, 325, 535
HindII	GTYRAC	3 cut(s)	106, 325, 535
HinfI	GANTC	3 cut(s)	431, 443, 670
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	2 cut(s)	223, 596
Hpy166II	GTNNAC	5 cut(s)	106, 252, 325, 535, 604
Hpy188I	TCNGA	4 cut(s)	186, 499, 850, 875
Hpy188III	TCNNGA	2 cut(s)	612, 893
Hpy8I	GTNNAC	5 cut(s)	106, 252, 325, 535, 604
Hpy99I	CGWCG	4 cut(s)	95, 101, 107, 110
HpyAV	CCTTC	4 cut(s)	60, 160, 355, 564
HpyCH4III	ACNGT	1 cut(s)	688
HpyCH4IV	ACGT	1 cut(s)	517
HpyCH4V	TGCA	7 cut(s)	263, 310, 413, 515, 692, 716, 742
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 107, 119, 571, 722, 865
HpyF3I	CTNAG	3 cut(s)	42, 728, 765
HpySE526I	ACGT	1 cut(s)	517
Hsp92I	GRCGYC	2 cut(s)	99, 108
Hsp92II	CATG	5 cut(s)	263, 386, 561, 648, 896
Ksp22I	TGATCA	2 cut(s)	256, 870
Kzo9I	GATC	4 cut(s)	45, 256, 786, 870
LmnI	GCTCC	2 cut(s)	38, 915
Lsp1109I	GCAGC	3 cut(s)	322, 561, 574
MaeI	CTAG	1 cut(s)	946
MaeII	ACGT	1 cut(s)	517
MalI	GATC	4 cut(s)	47, 258, 788, 872
MboI	GATC	4 cut(s)	45, 256, 786, 870
MboII	GAAGA	6 cut(s)	199, 212, 281, 370, 671, 752
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	2 cut(s)	148, 884
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	4 cut(s)	475, 675, 698, 852
MluNI	TGGCCA	1 cut(s)	346
MnlI	CCTC	7 cut(s)	98, 214, 274, 534, 820, 869, 916
Mox20I	TGGCCA	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	3 cut(s)	378, 651, 666
Msp20I	TGGCCA	1 cut(s)	346
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	4 cut(s)	70, 84, 352, 636
MvaI	CCWGG	4 cut(s)	70, 84, 352, 636
MwoI	GCNNNNNNNGC	6 cut(s)	93, 107, 119, 571, 722, 865
NdeII	GATC	4 cut(s)	45, 256, 786, 870
NlaIII	CATG	5 cut(s)	263, 386, 561, 648, 896
NlaIV	GGNNCC	2 cut(s)	67, 907
PaeR7I	CTCGAG	1 cut(s)	456
PagI	TCATGA	1 cut(s)	892
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	431, 443, 670
Pfl23II	CGTACG	1 cut(s)	6
PflFI	GACNNNGTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	246
PfoI	TCCNGGA	1 cut(s)	634
PkrI	GCNGC	4 cut(s)	112, 312, 564, 576
Ppu21I	YACGTR	1 cut(s)	518
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	4 cut(s)	68, 82, 350, 634
PspGI	CCWGG	4 cut(s)	68, 82, 350, 634
PspLI	CGTACG	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	67, 907
PspPI	GGNCC	2 cut(s)	66, 905
PspPPI	RGGWCCY	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	45
PsyI	GACNNNGTC	1 cut(s)	101
RsaI	GTAC	4 cut(s)	8, 253, 276, 772
RsaNI	GTAC	4 cut(s)	7, 252, 275, 771
SalI	GTCGAC	1 cut(s)	104
SaqAI	TTAA	3 cut(s)	378, 651, 666
SatI	GCNGC	4 cut(s)	111, 311, 563, 575
Sau3AI	GATC	4 cut(s)	45, 256, 786, 870
Sau96I	GGNCC	2 cut(s)	66, 905
ScaI	AGTACT	1 cut(s)	772
ScrFI	CCNGG	4 cut(s)	70, 84, 352, 636
SduI	GDGCHC	2 cut(s)	148, 884
SfcI	CTRYAG	1 cut(s)	910
Sfr274I	CTCGAG	1 cut(s)	456
SgrDI	CGTCGACG	1 cut(s)	104
SinI	GGWCC	2 cut(s)	66, 905
SlaI	CTCGAG	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	456, 665
SmoI	CTYRAG	2 cut(s)	456, 665
Sse9I	AATT	4 cut(s)	475, 675, 698, 852
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	1 cut(s)	946
StyD4I	CCNGG	4 cut(s)	68, 82, 350, 634
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	1 cut(s)	688
TaiI	ACGT	1 cut(s)	520
TaqI	TCGA	3 cut(s)	105, 315, 457
TasI	AATT	4 cut(s)	475, 675, 698, 852
TatI	WGTACW	2 cut(s)	251, 770
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	3 cut(s)	431, 443, 670
Tru1I	TTAA	3 cut(s)	378, 651, 666
Tru9I	TTAA	3 cut(s)	378, 651, 666
TscAI	CASTG	3 cut(s)	347, 630, 691
TseI	GCWGC	3 cut(s)	310, 562, 574
TspDTI	ATGAA	5 cut(s)	371, 399, 546, 792, 881
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	3 cut(s)	347, 630, 691
Tth111I	GACNNNGTC	1 cut(s)	101
Van91I	CCANNNNNTGG	1 cut(s)	246
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	2 cut(s)	66, 905
XagI	CCTNNNNNAGG	1 cut(s)	54
XhoI	CTCGAG	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	1 cut(s)	946
ZrmI	AGTACT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.