Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015750

Physical Location & Seq

Genomic Coordinates Forward (+)

1121686 .. 1123028

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35903

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCATGATCGATATGCCAATCGTAACATTGTCTTCTTTGATATCAACTTGAAAGGGTTGGATGGCATCCAGGGTCCAGTTTATGTGGGAACTAGTTGCTGTTTCATCAGGCAAGCACTATATGGGTATGATCTTGTTTTGACTGAGGAAGATTTGGAACCAAACATCATATTCAAGAGTTGTTGTGGTTCAAGAAAGAAGGGAAAGACCAGCAATAAGAAATATATTGATAAGAAGAGGGCTGCTCTTAGTTATTTTAATTTGAGATTCCAGGGCTCTTTAGAGAAATTCAACCGAAGCTATGATGGAGGCAAGGGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

107

Amino Acids

12.21

Weight (kDa)

9.26

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	2 - 78	1.7e-27	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385591 RchiOBHm_Chr6g0297401
rosa_laevigata	RLG00000009216 RLG00000019703 RLG00000023657
rosa_roxburghii	Rroxscaffold_3G00255730 Rroxscaffold_7G00207230
rosa_rugosa	Rorug05G0461100
rosa_samantha	Rh2AG534100 Rh2CG518000 Rh5AG514500 Rh5BG327400 Rh5CG180700 Rh5DG338600 Rh6BG220300
rosa_wichuraiana	Rw7G037470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	287
AgsI	TTSAA	4 cut(s)	52, 175, 192, 292
AhlI	ACTAGT	1 cut(s)	92
AjnI	CCWGG	2 cut(s)	69, 270
AluBI	AGCT	1 cut(s)	300
AluI	AGCT	1 cut(s)	300
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	2 cut(s)	56, 299
BciT130I	CCWGG	2 cut(s)	71, 272
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	1 cut(s)	93
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	2 cut(s)	71, 272
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	75, 159
BmrFI	CCNGG	2 cut(s)	71, 272
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	25
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
Bsa29I	ATCGAT	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	70, 271
Bse1I	ACTGG	1 cut(s)	77
BseBI	CCWGG	2 cut(s)	71, 272
BseCI	ATCGAT	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	70, 271
BseGI	GGATG	2 cut(s)	66, 67
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	7, 130
BspCNI	CTCAG	1 cut(s)	136
BspDI	ATCGAT	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	75, 159
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	70, 271
BssMI	GATC	2 cut(s)	7, 130
Bst2UI	CCWGG	2 cut(s)	71, 272
Bst6I	CTCTTC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	144, 248
BstF5I	GGATG	2 cut(s)	66, 67
BstKTI	GATC	2 cut(s)	10, 133
BstMBI	GATC	2 cut(s)	7, 130
BstNI	CCWGG	2 cut(s)	71, 272
BstSCI	CCNGG	2 cut(s)	69, 270
BstV1I	GCAGC	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	10
BsuTUI	ATCGAT	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	66, 67
Cac8I	GCNNGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	74
ClaI	ATCGAT	1 cut(s)	10
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	3 cut(s)	242, 276, 300
CviKI_1	RGCY	3 cut(s)	242, 276, 300
DdeI	CTNAG	2 cut(s)	144, 248
DpnI	GATC	2 cut(s)	9, 132
DpnII	GATC	2 cut(s)	7, 130
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	69, 270
EcoRV	GATATC	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	278
FaeI	CATG	1 cut(s)	8
FaiI	YATR	9 cut(s)	6, 15, 84, 121, 123, 129, 170, 225, 303
FatI	CATG	1 cut(s)	4
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	2 cut(s)	53, 74
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	1 cut(s)	243
Hin1II	CATG	1 cut(s)	8
HinfI	GANTC	1 cut(s)	267
Hpy188III	TCNNGA	2 cut(s)	175, 192
HpyAV	CCTTC	1 cut(s)	193
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	144, 248
Hsp92II	CATG	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	7, 130
LpnPI	CCDG	7 cut(s)	56, 83, 90, 94, 223, 257, 284
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	2 cut(s)	9, 132
MboI	GATC	2 cut(s)	7, 130
MboII	GAAGA	3 cut(s)	25, 161, 247
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	2 cut(s)	259, 287
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	3 cut(s)	139, 231, 302
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	258
MspR9I	CCNGG	2 cut(s)	71, 272
MvaI	CCWGG	2 cut(s)	71, 272
NdeII	GATC	2 cut(s)	7, 130
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	2 cut(s)	75, 159
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	267
PkrI	GCNGC	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	69, 270
PspGI	CCWGG	2 cut(s)	69, 270
PspN4I	GGNNCC	2 cut(s)	75, 159
PspPI	GGNCC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	7, 130
Sau96I	GGNCC	1 cut(s)	74
ScrFI	CCNGG	2 cut(s)	71, 272
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	1 cut(s)	302
SfaNI	GCATC	1 cut(s)	75
SinI	GGWCC	1 cut(s)	74
SpeI	ACTAGT	1 cut(s)	92
Sse9I	AATT	2 cut(s)	259, 287
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	69, 270
TaqI	TCGA	1 cut(s)	10
TasI	AATT	2 cut(s)	259, 287
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	287
XspI	CTAG	1 cut(s)	93
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.