Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015750

Physical Location & Seq

Genomic Coordinates Reverse (-)

26732097 .. 26734637

Gene Structure 2541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023657

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCAACAACGGAAAATTGGGGTTTTTGGAATCAGACGCAGCACTGGTCCAGAGAATCTCTTCGATATCCATTTGGGTTGAGGTTATTTCTACTCCTTGATGGCTCCGCGCCTCTTTGGCTTATGACCATCAAGTTGAAAGGGTTGGATGGCATCCAGGGTCCAGTCTATGTGGGAACTGGTTGCTGTTTCAACAGGCAAGCACTATATGGGGTAGACACTGAAGAGGCAAGGGTTGTTGATATTCTAAATGCAATGGAACCACTTGCATATAGGAAAATGGACTTTGAAGAATTTTGTGCTGCTGCAATTAGCACGCATCAATTGGAGGCCCTCGAAGGATGGGAGCAGATAGCATCTACTACTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010150 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

Pkinase

Protein Analysis

124

Amino Acids

14.0

Weight (kDa)

4.77

Isoelectric Point (pI)

29.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	42 - 80	1.1e-12	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385591 RchiOBHm_Chr6g0297401
rosa_laevigata	RLG00000009216 RLG00000019703 RLG00000023657
rosa_roxburghii	Rroxscaffold_3G00255730 Rroxscaffold_7G00207230
rosa_rugosa	Rorug05G0461100
rosa_samantha	Rh2AG534100 Rh2CG518000 Rh5AG514500 Rh5BG327400 Rh5CG180700 Rh5DG338600 Rh6BG220300
rosa_wichuraiana	Rw7G037470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	110
AciI	CCGC	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	243
AgsI	TTSAA	3 cut(s)	139, 193, 290
AjnI	CCWGG	1 cut(s)	156
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	3 cut(s)	40, 302, 305
ApoI	RAATTY	1 cut(s)	293
Asp700I	GAANNNNTTC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	3 cut(s)	48, 161, 331
AvaII	GGWCC	2 cut(s)	48, 161
BbvI	GCAGC	3 cut(s)	52, 289, 292
BccI	CCATC	4 cut(s)	95, 137, 143, 336
BciT130I	CCWGG	1 cut(s)	158
BglI	GCCNNNNNGGC	1 cut(s)	118
BisI	GCNGC	3 cut(s)	41, 303, 306
BlsI	GCNGC	3 cut(s)	42, 304, 307
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	2 cut(s)	48, 161
BmgT120I	GGNCC	3 cut(s)	48, 161, 331
BmiI	GGNNCC	3 cut(s)	106, 162, 261
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	3 cut(s)	162, 328, 365
BsaJI	CCNNGG	1 cut(s)	157
Bse1I	ACTGG	3 cut(s)	50, 164, 184
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	3 cut(s)	153, 154, 347
BseMI	GCAATG	1 cut(s)	261
BseNI	ACTGG	3 cut(s)	50, 164, 184
BseXI	GCAGC	3 cut(s)	52, 289, 292
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	332
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	1 cut(s)	332
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	3 cut(s)	106, 162, 261
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	3 cut(s)	50, 164, 184
BssECI	CCNNGG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	158
Bst6I	CTCTTC	2 cut(s)	66, 219
BstC8I	GCNNGC	2 cut(s)	201, 317
BstF5I	GGATG	3 cut(s)	153, 154, 347
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	3 cut(s)	52, 289, 292
BsuRI	GGCC	1 cut(s)	332
BtsCI	GGATG	3 cut(s)	153, 154, 347
BtsIMutI	CAGTG	2 cut(s)	43, 219
Cac8I	GCNNGC	2 cut(s)	201, 317
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	3 cut(s)	48, 161, 331
CseI	GACGC	1 cut(s)	46
CviJI	RGCY	3 cut(s)	105, 121, 332
CviKI_1	RGCY	3 cut(s)	105, 121, 332
Eam1104I	CTCTTC	2 cut(s)	66, 219
EarI	CTCTTC	2 cut(s)	66, 219
Eco32I	GATATC	1 cut(s)	68
Eco47I	GGWCC	2 cut(s)	48, 161
Eco57I	CTGAAG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	68
FaiI	YATR	6 cut(s)	125, 171, 208, 210, 271, 273
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	41, 303, 306
FokI	GGATG	3 cut(s)	140, 161, 354
Fsp4HI	GCNGC	3 cut(s)	41, 303, 306
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	3 cut(s)	41, 303, 306
HaeIII	GGCC	1 cut(s)	332
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	31, 56
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	51
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	254, 269, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HspAI	GCGC	1 cut(s)	110
LmnI	GCTCC	2 cut(s)	110, 346
LpnPI	CCDG	7 cut(s)	31, 64, 143, 165, 170, 177, 181
Lsp1109I	GCAGC	3 cut(s)	52, 289, 292
LweI	GCATC	3 cut(s)	162, 328, 365
MboII	GAAGA	3 cut(s)	53, 236, 302
MfeI	CAATTG	1 cut(s)	323
MluCI	AATT	4 cut(s)	16, 293, 309, 323
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	5 cut(s)	75, 123, 220, 322, 344
MroXI	GAANNNNTTC	1 cut(s)	60
MseI	TTAA	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	118
NlaIV	GGNNCC	3 cut(s)	106, 162, 261
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	31, 56
PkrI	GCNGC	3 cut(s)	42, 304, 307
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	3 cut(s)	106, 162, 261
PspPI	GGNCC	3 cut(s)	48, 161, 331
SaqAI	TTAA	1 cut(s)	370
SatI	GCNGC	3 cut(s)	41, 303, 306
Sau96I	GGNCC	3 cut(s)	48, 161, 331
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	1 cut(s)	86
SfaNI	GCATC	3 cut(s)	162, 328, 365
SinI	GGWCC	2 cut(s)	48, 161
Sse9I	AATT	4 cut(s)	16, 293, 309, 323
SsiI	CCGC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	156
TaqI	TCGA	2 cut(s)	64, 336
TasI	AATT	4 cut(s)	16, 293, 309, 323
TfiI	GAWTC	2 cut(s)	31, 56
Tru1I	TTAA	1 cut(s)	370
Tru9I	TTAA	1 cut(s)	370
TscAI	CASTG	2 cut(s)	50, 226
TseI	GCWGC	3 cut(s)	40, 302, 305
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	50, 226
VpaK11BI	GGWCC	2 cut(s)	48, 161
XapI	RAATTY	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.