Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015750

Physical Location & Seq

Genomic Coordinates Forward (+)

57113026 .. 57126554

Gene Structure 13529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCTGGAAACACGGAAGTCTTTTAAAGCCAGTTTGGCAGTAGCGGAGTTGACAATTGCAATACACCATGTTTTCCATGCACCGGTTGATAAGATACTATGGGATGCTATAGAACAAGCTTTTCAGAGAAATTCAACCGAAGCTATGATGGAGGCAAGGGTTGTTGATATTCTAAATGCAATGGAACCACTTGCATATAGGAAAATGGACTTTGAAGAATTTTGTGCTGCTGCAATTAGCAGGCATCAATTGGAGGCCCTCGAAGGATGGGAGCAGATAGCATCTACTGCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010150 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

Pkinase

Protein Analysis

98

Amino Acids

11.15

Weight (kDa)

5.08

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_synthase_N	PF13292	8 - 42	1.7e-07	1-deoxy-D-xylulose-5-phosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385591 RchiOBHm_Chr6g0297401
rosa_laevigata	RLG00000009216 RLG00000019703 RLG00000023657
rosa_roxburghii	Rroxscaffold_3G00255730 Rroxscaffold_7G00207230
rosa_rugosa	Rorug05G0461100
rosa_samantha	Rh2AG534100 Rh2CG518000 Rh5AG514500 Rh5BG327400 Rh5CG180700 Rh5DG338600 Rh6BG220300
rosa_wichuraiana	Rw7G037470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	130, 218
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgeI	ACCGGT	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	135, 215
AluBI	AGCT	2 cut(s)	119, 143
AluI	AGCT	2 cut(s)	119, 143
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	2 cut(s)	227, 230
ApoI	RAATTY	2 cut(s)	130, 218
AsiGI	ACCGGT	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	214, 217
BccI	CCATC	2 cut(s)	142, 261
BfmI	CTRYAG	1 cut(s)	108
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	2 cut(s)	228, 231
BlsI	GCNGC	2 cut(s)	229, 232
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	186
BmsI	GCATC	3 cut(s)	94, 253, 290
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	109, 272
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	214, 217
BshFI	GGCC	1 cut(s)	257
BshTI	ACCGGT	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	82
BsnI	GGCC	1 cut(s)	257
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	82
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	109, 272
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 287
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	214, 217
BsuRI	GGCC	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	109, 272
Cac8I	GCNNGC	1 cut(s)	242
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	256
CspAI	ACCGGT	1 cut(s)	82
CviAII	CATG	2 cut(s)	68, 77
CviJI	RGCY	4 cut(s)	29, 119, 143, 257
CviKI_1	RGCY	4 cut(s)	29, 119, 143, 257
DraI	TTTAAA	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	256
FaeI	CATG	2 cut(s)	71, 80
FaiI	YATR	7 cut(s)	69, 78, 100, 110, 146, 196, 198
FatI	CATG	2 cut(s)	67, 76
Fnu4HI	GCNGC	2 cut(s)	228, 231
FokI	GGATG	2 cut(s)	116, 279
Fsp4HI	GCNGC	2 cut(s)	228, 231
GluI	GCNGC	2 cut(s)	228, 231
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	2 cut(s)	71, 80
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	117
HpaII	CCGG	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	1 cut(s)	126
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	1 cut(s)	257
HpyCH4V	TGCA	5 cut(s)	59, 80, 179, 194, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 287
Hsp92II	CATG	2 cut(s)	71, 80
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	3 cut(s)	43, 96, 226
Lsp1109I	GCAGC	2 cut(s)	214, 217
LweI	GCATC	3 cut(s)	94, 253, 290
MboII	GAAGA	1 cut(s)	227
MfeI	CAATTG	2 cut(s)	54, 248
MluCI	AATT	5 cut(s)	54, 130, 218, 234, 248
MnlI	CCTC	3 cut(s)	145, 247, 269
MseI	TTAA	2 cut(s)	24, 295
MspI	CCGG	1 cut(s)	83
MunI	CAATTG	2 cut(s)	54, 248
MwoI	GCNNNNNNNGC	2 cut(s)	35, 287
NlaIII	CATG	2 cut(s)	71, 80
NlaIV	GGNNCC	1 cut(s)	186
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	229, 232
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	24, 295
SatI	GCNGC	2 cut(s)	228, 231
Sau96I	GGNCC	1 cut(s)	256
SetI	ASST	2 cut(s)	121, 145
SfaNI	GCATC	3 cut(s)	94, 253, 290
SfcI	CTRYAG	1 cut(s)	108
Sse9I	AATT	5 cut(s)	54, 130, 218, 234, 248
SsiI	CCGC	1 cut(s)	44
TaqI	TCGA	1 cut(s)	261
TasI	AATT	5 cut(s)	54, 130, 218, 234, 248
Tru1I	TTAA	2 cut(s)	24, 295
Tru9I	TTAA	2 cut(s)	24, 295
TseI	GCWGC	2 cut(s)	227, 230
TspGWI	ACGGA	1 cut(s)	28
XapI	RAATTY	2 cut(s)	130, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.