Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015750

Physical Location & Seq

Genomic Coordinates Reverse (-)

48966252 .. 48968243

Gene Structure 1992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009216

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCATGATCGATATGCCAATCATAACATTGTCTTCTTTGATATCAACTTGAAAGGGTTGGATGGCATCCAGGGTCCAGTCTATGTAGGAACTGGTTGCTGTTTCAACAGGCAAGCACTATATGGGTATGATCCTGTTTTGACTGAGGAAGATTTGGAACCAAACATCATATTCAAGAGTTGTTGTGGTTCAAGAAAGAAGGCTCTTCAGAGAAATTCAACTGAAGCTATGATGGAGGCAAGGGTTGTTGATATTCTAAATGCAATGGAACCACTTGCATATAGGAAAATGGACTTTGAAGAATTTTGTGCTGCTGCAATTAGCACGCATCAATTGGAGGCCCTCGAAGGATGGGAGCAGATAGCATCTACTGCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

127

Amino Acids

14.22

Weight (kDa)

4.84

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	2 - 84	7.4e-30	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385591 RchiOBHm_Chr6g0297401
rosa_laevigata	RLG00000009216 RLG00000019703 RLG00000023657
rosa_roxburghii	Rroxscaffold_3G00255730 Rroxscaffold_7G00207230
rosa_rugosa	Rorug05G0461100
rosa_samantha	Rh2AG534100 Rh2CG518000 Rh5AG514500 Rh5BG327400 Rh5CG180700 Rh5DG338600 Rh6BG220300
rosa_wichuraiana	Rw7G037470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	2 cut(s)	214, 302
AcuI	CTGAAG	2 cut(s)	191, 243
AgsI	TTSAA	6 cut(s)	52, 106, 175, 192, 219, 299
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	2 cut(s)	311, 314
ApoI	RAATTY	2 cut(s)	214, 302
AspS9I	GGNCC	2 cut(s)	74, 340
AvaII	GGWCC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	298, 301
BccI	CCATC	3 cut(s)	56, 226, 345
BciT130I	CCWGG	1 cut(s)	71
BisI	GCNGC	2 cut(s)	312, 315
BlsI	GCNGC	2 cut(s)	313, 316
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	74, 340
BmiI	GGNNCC	3 cut(s)	75, 159, 270
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	3 cut(s)	75, 337, 374
BpiI	GAAGAC	1 cut(s)	25
Bsa29I	ATCGAT	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	77, 97
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	71
BseCI	ATCGAT	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	3 cut(s)	66, 67, 356
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	2 cut(s)	77, 97
BseXI	GCAGC	2 cut(s)	298, 301
BshFI	GGCC	1 cut(s)	341
BshVI	ATCGAT	1 cut(s)	10
BsnI	GGCC	1 cut(s)	341
Bsp143I	GATC	2 cut(s)	7, 130
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	1 cut(s)	136
BspDI	ATCGAT	1 cut(s)	10
BspLI	GGNNCC	3 cut(s)	75, 159, 270
BspPI	GGATC	1 cut(s)	125
BspQI	GCTCTTC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	77, 97
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	2 cut(s)	7, 130
Bst2UI	CCWGG	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	114, 326
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	66, 67, 356
BstKTI	GATC	2 cut(s)	10, 133
BstMBI	GATC	2 cut(s)	7, 130
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstV1I	GCAGC	2 cut(s)	298, 301
BstV2I	GAAGAC	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	341
BsuTUI	ATCGAT	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	66, 67, 356
Cac8I	GCNNGC	2 cut(s)	114, 326
Cfr13I	GGNCC	2 cut(s)	74, 340
ClaI	ATCGAT	1 cut(s)	10
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	3 cut(s)	203, 227, 341
CviKI_1	RGCY	3 cut(s)	203, 227, 341
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	2 cut(s)	9, 132
DpnII	GATC	2 cut(s)	7, 130
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	74
Eco57I	CTGAAG	2 cut(s)	191, 243
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	8
FatI	CATG	1 cut(s)	4
Fnu4HI	GCNGC	2 cut(s)	312, 315
FokI	GGATG	3 cut(s)	53, 74, 363
Fsp4HI	GCNGC	2 cut(s)	312, 315
GluI	GCNGC	2 cut(s)	312, 315
HaeIII	GGCC	1 cut(s)	341
Hin1II	CATG	1 cut(s)	8
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	2 cut(s)	175, 192
HpyAV	CCTTC	2 cut(s)	193, 341
HpyCH4V	TGCA	4 cut(s)	4, 263, 278, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	7, 130
LguI	GCTCTTC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	6 cut(s)	56, 78, 83, 90, 94, 147
Lsp1109I	GCAGC	2 cut(s)	298, 301
LweI	GCATC	3 cut(s)	75, 337, 374
MalI	GATC	2 cut(s)	9, 132
MboI	GATC	2 cut(s)	7, 130
MboII	GAAGA	4 cut(s)	25, 161, 197, 311
MfeI	CAATTG	1 cut(s)	332
MluCI	AATT	4 cut(s)	214, 302, 318, 332
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	4 cut(s)	139, 229, 331, 353
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	379
MspR9I	CCNGG	1 cut(s)	71
MunI	CAATTG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	371
NdeII	GATC	2 cut(s)	7, 130
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	3 cut(s)	75, 159, 270
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	210
PkrI	GCNGC	2 cut(s)	313, 316
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	3 cut(s)	75, 159, 270
PspPI	GGNCC	2 cut(s)	74, 340
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	379
SatI	GCNGC	2 cut(s)	312, 315
Sau3AI	GATC	2 cut(s)	7, 130
Sau96I	GGNCC	2 cut(s)	74, 340
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	1 cut(s)	229
SfaNI	GCATC	3 cut(s)	75, 337, 374
SinI	GGWCC	1 cut(s)	74
Sse9I	AATT	4 cut(s)	214, 302, 318, 332
StyD4I	CCNGG	1 cut(s)	69
TaqI	TCGA	2 cut(s)	10, 345
TasI	AATT	4 cut(s)	214, 302, 318, 332
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
TseI	GCWGC	2 cut(s)	311, 314
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	2 cut(s)	214, 302
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.