Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0015750

Physical Location & Seq

Genomic Coordinates Reverse (-)

41590133 .. 41593549

Gene Structure 3417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG220300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCAGAGGGGTACTACCACTCTTAGAGACGAGCTTCTTGTGGAGGATCTGGAGGACGACGTGTCGTTTCATAGGCCGCCGAAGGGGTCATCGACGAGGTGGAAGGGGCTTCTGGGGCGGAAGAGGACTGCGCACATTGGGTCCAAGAAAGCTGAGAGAGGTAGTGATGGCTCTTCTATGGAAGGAAGAAGGTCTGGCCTTGTGCATGAGAGTTCTTCTTCACAGATTCGAGTTTCAGCTGTCCTGACAAATGGTGCATATCTTTTGAACGTCGATTGTGATCACTACTTCAATAACAGTAAAGCTGTTAAGGAAGCAATGTGTTTCATGATGGACCCAGCTTATGGGAAGAAGACCTGCTATGTACAGTTCCCACAACGTTTCGATGGGATTGACATGCATGATCGATATGCCAATCGTAACATTGTCTTCTTTGATATCAACTTGAAAGGGTTGGATGACATCCAGGGTCCAGTCTATGTGGGAACTGGTTGCTGTTTCAACAGGCAAGCACTATATGGGTATGATCCTGTTTTGACTGAGGAAGATTTGGAACCAAACATCATATTCAAGAGTTGTTGTGGTTCAAGAAAGAAGGGAAAGACCAGCAATAAGAAGTATATTGACAAGAAGAGGGCTGCTCTTAGTTCTTTTAATTTGAGATTCCAGGGTAGACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

226

Amino Acids

25.54

Weight (kDa)

9.2

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	73 - 210	7.3e-68	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385591 RchiOBHm_Chr6g0297401
rosa_laevigata	RLG00000009216 RLG00000019703 RLG00000023657
rosa_roxburghii	Rroxscaffold_3G00255730 Rroxscaffold_7G00207230
rosa_rugosa	Rorug05G0461100
rosa_samantha	Rh2AG534100 Rh2CG518000 Rh5AG514500 Rh5BG327400 Rh5CG180700 Rh5DG338600 Rh6BG220300
rosa_wichuraiana	Rw7G037470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	365
AccB7I	CCANNNNNTGG	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	673
AciI	CCGC	2 cut(s)	77, 118
AclI	AACGTT	1 cut(s)	379
AclWI	GGATC	2 cut(s)	54, 521
AfaI	GTAC	2 cut(s)	13, 366
AfiI	CCNNNNNNNGG	2 cut(s)	83, 344
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	6 cut(s)	268, 292, 448, 502, 571, 588
AhdI	GACNNNNNGTC	1 cut(s)	61
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	2 cut(s)	465, 666
AluBI	AGCT	5 cut(s)	34, 152, 239, 305, 341
AluI	AGCT	5 cut(s)	34, 152, 239, 305, 341
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	2 cut(s)	54, 521
AoxI	GGCC	2 cut(s)	74, 196
ApeKI	GCWGC	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	3 cut(s)	141, 334, 470
AvaII	GGWCC	3 cut(s)	141, 334, 470
BbsI	GAAGAC	2 cut(s)	359, 421
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	3 cut(s)	161, 325, 380
BciT130I	CCWGG	2 cut(s)	467, 668
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	365
BisI	GCNGC	2 cut(s)	77, 639
BlsI	GCNGC	2 cut(s)	78, 640
Bme1390I	CCNGG	2 cut(s)	467, 668
Bme18I	GGWCC	3 cut(s)	141, 334, 470
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	3 cut(s)	141, 334, 470
BmiI	GGNNCC	4 cut(s)	142, 336, 471, 555
BmrFI	CCNGG	2 cut(s)	467, 668
BpiI	GAAGAC	2 cut(s)	359, 421
BplI	GAGNNNNNCTC	2 cut(s)	625, 657
BpmI	CTGGAG	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	466, 667
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 344
Bse1I	ACTGG	2 cut(s)	473, 493
Bse3DI	GCAATG	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	467, 668
BseCI	ATCGAT	1 cut(s)	406
BseDI	CCNNGG	2 cut(s)	466, 667
BseGI	GGATG	2 cut(s)	462, 463
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	83, 344
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	2 cut(s)	144, 531
BseNI	ACTGG	2 cut(s)	473, 493
BseXI	GCAGC	1 cut(s)	625
BseYI	CCCAGC	1 cut(s)	337
BshFI	GGCC	2 cut(s)	76, 198
BshVI	ATCGAT	1 cut(s)	406
BslI	CCNNNNNNNGG	2 cut(s)	83, 344
BsmAI	GTCTC	1 cut(s)	21
BsmBI	CGTCTC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	76, 198
Bsp1407I	TGTACA	1 cut(s)	364
Bsp143I	GATC	4 cut(s)	46, 280, 403, 526
BspACI	CCGC	2 cut(s)	77, 118
BspANI	GGCC	2 cut(s)	76, 198
BspCNI	CTCAG	2 cut(s)	145, 532
BspDI	ATCGAT	1 cut(s)	406
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	4 cut(s)	142, 336, 471, 555
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	2 cut(s)	54, 521
BspQI	GCTCTTC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	324
BsrGI	TGTACA	1 cut(s)	364
BsrI	ACTGG	2 cut(s)	473, 493
BssECI	CCNNGG	2 cut(s)	466, 667
BssMI	GATC	4 cut(s)	46, 280, 403, 526
Bst2UI	CCWGG	2 cut(s)	467, 668
Bst4CI	ACNGT	2 cut(s)	299, 369
Bst6I	CTCTTC	3 cut(s)	116, 178, 626
BstAUI	TGTACA	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	4 cut(s)	23, 153, 540, 644
BstF5I	GGATG	2 cut(s)	462, 463
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	4 cut(s)	49, 283, 406, 529
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	4 cut(s)	46, 280, 403, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	2 cut(s)	467, 668
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	465, 666
BstV1I	GCAGC	1 cut(s)	625
BstV2I	GAAGAC	2 cut(s)	359, 421
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	76, 198
BsuTUI	ATCGAT	1 cut(s)	406
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	462, 463
BtsIMutI	CAGTG	1 cut(s)	676
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	1 cut(s)	510
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	3 cut(s)	141, 334, 470
ClaI	ATCGAT	1 cut(s)	406
Csp6I	GTAC	2 cut(s)	12, 365
CviAII	CATG	4 cut(s)	206, 328, 397, 401
CviQI	GTAC	2 cut(s)	12, 365
DdeI	CTNAG	4 cut(s)	23, 153, 540, 644
DpnI	GATC	4 cut(s)	48, 282, 405, 528
DpnII	GATC	4 cut(s)	46, 280, 403, 526
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1104I	CTCTTC	3 cut(s)	116, 178, 626
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EarI	CTCTTC	3 cut(s)	116, 178, 626
EciI	GGCGGA	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	439
Eco47I	GGWCC	3 cut(s)	141, 334, 470
EcoRII	CCWGG	2 cut(s)	465, 666
EcoRV	GATATC	1 cut(s)	439
EcoT22I	ATGCAT	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	4 cut(s)	209, 331, 400, 404
FatI	CATG	4 cut(s)	205, 327, 396, 400
FbaI	TGATCA	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	673
Fnu4HI	GCNGC	2 cut(s)	77, 639
FokI	GGATG	2 cut(s)	449, 470
Fsp4HI	GCNGC	2 cut(s)	77, 639
FspI	TGCGCA	1 cut(s)	132
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	2 cut(s)	77, 639
GsaI	CCCAGC	1 cut(s)	341
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	76, 198
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	4 cut(s)	209, 331, 400, 404
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	2 cut(s)	226, 663
Hpy166II	GTNNAC	1 cut(s)	674
Hpy188III	TCNNGA	5 cut(s)	50, 244, 328, 571, 588
Hpy8I	GTNNAC	1 cut(s)	674
Hpy99I	CGWCG	3 cut(s)	62, 97, 275
HpyAV	CCTTC	5 cut(s)	76, 97, 176, 183, 589
HpyCH4III	ACNGT	2 cut(s)	299, 369
HpyCH4IV	ACGT	3 cut(s)	60, 270, 379
HpyCH4V	TGCA	4 cut(s)	4, 205, 257, 400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	4 cut(s)	23, 153, 540, 644
HpySE526I	ACGT	3 cut(s)	60, 270, 379
Hsp92II	CATG	4 cut(s)	209, 331, 400, 404
HspAI	GCGC	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	4 cut(s)	46, 280, 403, 526
LguI	GCTCTTC	1 cut(s)	178
Lsp1109I	GCAGC	1 cut(s)	625
MaeII	ACGT	3 cut(s)	60, 270, 379
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	4 cut(s)	48, 282, 405, 528
MboI	GATC	4 cut(s)	46, 280, 403, 526
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	1 cut(s)	655
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	7 cut(s)	37, 46, 90, 117, 152, 535, 627
Mph1103I	ATGCAT	1 cut(s)	402
MseI	TTAA	2 cut(s)	309, 654
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	467, 668
MvaI	CCWGG	2 cut(s)	467, 668
MwoI	GCNNNNNNNGC	1 cut(s)	115
NdeII	GATC	4 cut(s)	46, 280, 403, 526
NlaIII	CATG	4 cut(s)	209, 331, 400, 404
NlaIV	GGNNCC	4 cut(s)	142, 336, 471, 555
NsbI	TGCGCA	1 cut(s)	132
NsiI	ATGCAT	1 cut(s)	402
NspI	RCATGY	1 cut(s)	400
PagI	TCATGA	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	226, 663
PflMI	CCANNNNNTGG	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	78, 640
Psp1406I	AACGTT	1 cut(s)	379
Psp6I	CCWGG	2 cut(s)	465, 666
PspFI	CCCAGC	1 cut(s)	337
PspGI	CCWGG	2 cut(s)	465, 666
PspN4I	GGNNCC	4 cut(s)	142, 336, 471, 555
PspPI	GGNCC	3 cut(s)	141, 334, 470
PsuI	RGATCY	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	2 cut(s)	13, 366
RsaNI	GTAC	2 cut(s)	12, 365
SapI	GCTCTTC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	309, 654
SatI	GCNGC	2 cut(s)	77, 639
Sau3AI	GATC	4 cut(s)	46, 280, 403, 526
Sau96I	GGNCC	3 cut(s)	141, 334, 470
ScrFI	CCNGG	2 cut(s)	467, 668
SinI	GGWCC	3 cut(s)	141, 334, 470
Sse9I	AATT	1 cut(s)	655
SsiI	CCGC	2 cut(s)	77, 118
StyD4I	CCNGG	2 cut(s)	465, 666
TaaI	ACNGT	2 cut(s)	299, 369
TaiI	ACGT	3 cut(s)	63, 273, 382
TaqI	TCGA	5 cut(s)	92, 229, 273, 384, 406
TasI	AATT	1 cut(s)	655
TatI	WGTACW	1 cut(s)	364
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	226, 663
Tru1I	TTAA	2 cut(s)	309, 654
Tru9I	TTAA	2 cut(s)	309, 654
TseI	GCWGC	1 cut(s)	638
TspDTI	ATGAA	2 cut(s)	59, 316
Van91I	CCANNNNNTGG	1 cut(s)	344
VpaK11BI	GGWCC	3 cut(s)	141, 334, 470
XceI	RCATGY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	673
Zsp2I	ATGCAT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.