Rh2CG518000

1-deoxy-D-xylulose-5-phosphate synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015750
Physical Location & Seq
Reverse (-)
69272865 .. 69275107
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG518000.1

Sequence Viewer

Length: 234 bp
ATGCTGGAAACACGGAAGTCTTTTAAAGCCAGTTTGGCAGTAGCGGATTTGACAATTGCAATACACCATGTTTTCCATGCACCGGTTGATAAGATACTATGGGATGCTATAGAACAAGGCATGGGTGCAACAGTGTTTCAGCTGGACTTGCAACAGGAGGATCTGGAATGTGCAAGCTCTTGCCCAGTAATGCTGATCGTTTGTGTAGAGGAGAGTAACAACCATCAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00730 ko00900 ko01100 ko01110 ko01130 map00730 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
DXP_synthase_N Transket_pyr Transketolase_C

Protein Analysis

77

Amino Acids

8.49

Weight (kDa)

4.69

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DXP_synthase_N PF13292 8 - 39 3.7e-06 1-deoxy-D-xylulose-5-phosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AclWI GGATC 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 82
AgeI ACCGGT 1 cut(s) 82
AluBI AGCT 2 cut(s) 142, 177
AluI AGCT 2 cut(s) 142, 177
AlwI GGATC 1 cut(s) 168
AsiGI ACCGGT 1 cut(s) 82
BccI CCATC 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 108
BglI GCCNNNNNGGC 1 cut(s) 35
BmrI ACTGGG 1 cut(s) 179
BmsI GCATC 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 30, 185
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 30, 185
BseRI GAGGAG 1 cut(s) 224
BshTI ACCGGT 1 cut(s) 82
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 82
Bsp143I GATC 2 cut(s) 160, 195
BspACI CCGC 1 cut(s) 44
BspPI GGATC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 2 cut(s) 30, 185
BssAI RCCGGY 1 cut(s) 82
BssMI GATC 2 cut(s) 160, 195
Bst4CI ACNGT 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 175
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 2 cut(s) 163, 198
BstMBI GATC 2 cut(s) 160, 195
BstMWI GCNNNNNNNGC 2 cut(s) 35, 148
BstSFI CTRYAG 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 82
CspAI ACCGGT 1 cut(s) 82
CviAII CATG 3 cut(s) 68, 77, 121
CviJI RGCY 3 cut(s) 29, 142, 177
CviKI_1 RGCY 3 cut(s) 29, 142, 177
DpnI GATC 2 cut(s) 162, 197
DpnII GATC 2 cut(s) 160, 195
DraI TTTAAA 1 cut(s) 25
FaeI CATG 3 cut(s) 71, 80, 124
FaiI YATR 5 cut(s) 69, 78, 100, 110, 122
FatI CATG 3 cut(s) 67, 76, 120
FokI GGATG 1 cut(s) 116
HapII CCGG 1 cut(s) 83
Hin1II CATG 3 cut(s) 71, 80, 124
HpaII CCGG 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 5 cut(s) 59, 80, 128, 151, 173
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 148
Hsp92II CATG 3 cut(s) 71, 80, 124
Kzo9I GATC 2 cut(s) 160, 195
LpnPI CCDG 6 cut(s) 43, 96, 128, 140, 149, 198
LweI GCATC 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 215
MalI GATC 2 cut(s) 162, 197
MboI GATC 2 cut(s) 160, 195
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 1 cut(s) 160
MluCI AATT 1 cut(s) 54
MnlI CCTC 2 cut(s) 151, 202
MseI TTAA 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 1 cut(s) 83
MunI CAATTG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 35, 148
NdeII GATC 2 cut(s) 160, 195
NlaIII CATG 3 cut(s) 71, 80, 124
PinAI ACCGGT 1 cut(s) 82
PsuI RGATCY 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 142
SaqAI TTAA 1 cut(s) 24
Sau3AI GATC 2 cut(s) 160, 195
SetI ASST 3 cut(s) 144, 179, 232
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 108
Sse9I AATT 1 cut(s) 54
SsiI CCGC 1 cut(s) 44
TaaI ACNGT 1 cut(s) 133
TasI AATT 1 cut(s) 54
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 1 cut(s) 138
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.