Rorug05G0461100

Protein SHOOT GRAVITROPISM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015750
Physical Location & Seq
Forward (+)
63465394 .. 63468393
3000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0461100.1

Sequence Viewer

Length: 489 bp
ATGGCGGGGCTCATCTGGGATGCCACCCCGGGCACCCAGGGCCCTGGGCAAGGCCAGCACAGCCCAACTATTTACACAACAGGAGGACTGATGGCATCAGAAGAACAACTAGTGTCCCACATCGAGGATGGGGGAGACTTCCTTCACATGCTCGAGTATAAAGGCATTAGCACAACTACCTTTTACGGTCTCCCAGCCATTCTCGCCGTTCTCGTCCTCCTTTCACCGTTCTCCTTCGCCGTCGCCGTCGCCGATGACGATACCCGATCAGCCTACGACATCATCCAGGACTTCAACTTCCCGATGGGGATTCTCCCCAAGGGTGTCACCGGCTACGACCTCGACTGGAGCACCGGCAAGTGGGCCGCCTATTTCGACGGCGCGGGTAGCTTCGCGCTCGAAGGCTCGTACCAGCTCAAGTACAAGTCCACCATCACCGGCACTATCTCCGAGAACAGGCTCAAGGACCTGACCGGAGTCAGCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cnd1

Protein Analysis

162

Amino Acids

17.36

Weight (kDa)

4.39

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 91 - 162 3.4e-17 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AccII CGCG 2 cut(s) 383, 395
AciI CCGC 3 cut(s) 5, 366, 383
AfaI GTAC 2 cut(s) 410, 422
AfiI CCNNNNNNNGG 4 cut(s) 50, 124, 360, 456
AgsI TTSAA 1 cut(s) 295
AhlI ACTAGT 1 cut(s) 109
AjnI CCWGG 3 cut(s) 36, 43, 285
AluBI AGCT 2 cut(s) 390, 415
AluI AGCT 2 cut(s) 390, 415
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 2 cut(s) 129, 194
Ama87I CYCGRG 2 cut(s) 28, 152
AoxI GGCC 3 cut(s) 40, 52, 363
ApaI GGGCCC 1 cut(s) 44
AspLEI GCGC 2 cut(s) 383, 397
AspS9I GGNCC 4 cut(s) 40, 41, 363, 466
AsuC2I CCSGG 2 cut(s) 29, 30
AsuHPI GGTGA 3 cut(s) 216, 319, 427
AvaI CYCGRG 2 cut(s) 28, 152
AvaII GGWCC 1 cut(s) 466
BaeGI GKGCMC 2 cut(s) 35, 44
BanI GGYRCC 1 cut(s) 32
BanII GRGCYC 2 cut(s) 12, 44
Bbv12I GWGCWC 1 cut(s) 353
BccI CCATC 4 cut(s) 85, 122, 298, 440
BceAI ACGGC 4 cut(s) 191, 224, 230, 394
BciT130I CCWGG 3 cut(s) 38, 45, 287
BcnI CCSGG 2 cut(s) 29, 30
BcoDI GTCTC 2 cut(s) 129, 194
BcuI ACTAGT 1 cut(s) 109
BfaI CTAG 2 cut(s) 110, 487
BisI GCNGC 1 cut(s) 366
BlsI GCNGC 1 cut(s) 367
Bme1390I CCNGG 5 cut(s) 29, 30, 38, 45, 287
Bme18I GGWCC 1 cut(s) 466
BmeT110I CYCGRG 2 cut(s) 28, 152
BmgT120I GGNCC 4 cut(s) 40, 41, 363, 466
BmiI GGNNCC 2 cut(s) 34, 42
BmrFI CCNGG 5 cut(s) 29, 30, 38, 45, 287
BmsI GCATC 2 cut(s) 10, 104
BoxI GACNNNNGTC 1 cut(s) 476
BpmI CTGGAG 1 cut(s) 367
BpuEI CTTGAG 2 cut(s) 401, 446
BpuMI CCSGG 2 cut(s) 29, 30
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 7 cut(s) 27, 28, 36, 37, 43, 44, 318
BsaWI WCCGGW 1 cut(s) 473
BsaXI ACNNNNNCTCC 1 cut(s) 468
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 124, 360, 456
Bse118I RCCGGY 3 cut(s) 329, 353, 437
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 3 cut(s) 38, 45, 287
BseDI CCNNGG 7 cut(s) 27, 28, 36, 37, 43, 44, 318
BseGI GGATG 3 cut(s) 25, 133, 282
BseLI CCNNNNNNNGG 4 cut(s) 50, 124, 360, 456
BseNI ACTGG 1 cut(s) 350
BseSI GKGCMC 2 cut(s) 35, 44
BseYI CCCAGC 1 cut(s) 193
Bsh1236I CGCG 2 cut(s) 383, 395
BshFI GGCC 3 cut(s) 42, 54, 365
BshNI GGYRCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 353
BsiHKCI CYCGRG 2 cut(s) 28, 152
BsiSI CCGG 5 cut(s) 29, 330, 354, 438, 474
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 4 cut(s) 50, 124, 360, 456
BsmAI GTCTC 2 cut(s) 129, 194
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 3 cut(s) 42, 54, 365
Bso31I GGTCTC 1 cut(s) 194
BsoBI CYCGRG 2 cut(s) 28, 152
Bsp120I GGGCCC 1 cut(s) 40
Bsp1286I GDGCHC 4 cut(s) 12, 35, 44, 353
Bsp143I GATC 1 cut(s) 266
BspACI CCGC 3 cut(s) 5, 366, 383
BspANI GGCC 3 cut(s) 42, 54, 365
BspFNI CGCG 2 cut(s) 383, 395
BspLI GGNNCC 2 cut(s) 34, 42
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 194
BsrFI RCCGGY 3 cut(s) 329, 353, 437
BsrI ACTGG 1 cut(s) 350
BssAI RCCGGY 3 cut(s) 329, 353, 437
BssECI CCNNGG 7 cut(s) 27, 28, 36, 37, 43, 44, 318
BssMI GATC 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 3 cut(s) 38, 45, 287
Bst4CI ACNGT 2 cut(s) 188, 228
BstC8I GCNNGC 1 cut(s) 56
BstENI CCTNNNNNAGG 1 cut(s) 48
BstF5I GGATG 3 cut(s) 25, 133, 282
BstFNI CGCG 2 cut(s) 383, 395
BstHHI GCGC 2 cut(s) 383, 397
BstKTI GATC 1 cut(s) 269
BstMAI GTCTC 2 cut(s) 129, 194
BstMBI GATC 1 cut(s) 266
BstMWI GCNNNNNNNGC 5 cut(s) 39, 55, 60, 203, 387
BstNI CCWGG 3 cut(s) 38, 45, 287
BstNSI RCATGY 1 cut(s) 151
BstPAI GACNNNNGTC 1 cut(s) 476
BstSCI CCNGG 5 cut(s) 27, 28, 36, 43, 285
BstSLI GKGCMC 2 cut(s) 35, 44
BstUI CGCG 2 cut(s) 383, 395
BstXI CCANNNNNNTGG 1 cut(s) 44
BsuRI GGCC 3 cut(s) 42, 54, 365
BtsCI GGATG 3 cut(s) 25, 133, 282
Cac8I GCNNGC 1 cut(s) 56
CfoI GCGC 2 cut(s) 383, 397
Cfr10I RCCGGY 3 cut(s) 329, 353, 437
Cfr13I GGNCC 4 cut(s) 40, 41, 363, 466
Cfr9I CCCGGG 1 cut(s) 28
CseI GACGC 1 cut(s) 472
Csp6I GTAC 2 cut(s) 409, 421
CviAII CATG 1 cut(s) 148
CviQI GTAC 2 cut(s) 409, 421
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 2 cut(s) 12, 44
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 466
Eco88I CYCGRG 2 cut(s) 28, 152
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoO109I RGGNCCY 3 cut(s) 40, 41, 466
EcoRII CCWGG 3 cut(s) 36, 43, 285
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 2 cut(s) 12, 44
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 1 cut(s) 151
FaiI YATR 2 cut(s) 149, 159
FaqI GGGAC 1 cut(s) 100
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 376
Fnu4HI GCNGC 1 cut(s) 366
FokI GGATG 3 cut(s) 32, 140, 269
FriOI GRGCYC 2 cut(s) 12, 44
Fsp4HI GCNGC 1 cut(s) 366
FspBI CTAG 2 cut(s) 110, 487
GlaI GCGC 2 cut(s) 382, 396
GluI GCNGC 1 cut(s) 366
GsaI CCCAGC 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 367
HaeIII GGCC 3 cut(s) 42, 54, 365
HapII CCGG 5 cut(s) 29, 330, 354, 438, 474
HgaI GACGC 1 cut(s) 472
HhaI GCGC 2 cut(s) 383, 397
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 2 cut(s) 381, 395
HinP1I GCGC 2 cut(s) 381, 395
HinfI GANTC 2 cut(s) 310, 477
HpaII CCGG 5 cut(s) 29, 330, 354, 438, 474
HphI GGTGA 3 cut(s) 216, 319, 427
Hpy166II GTNNAC 1 cut(s) 429
Hpy188I TCNGA 2 cut(s) 100, 451
Hpy188III TCNNGA 1 cut(s) 301
Hpy8I GTNNAC 1 cut(s) 429
Hpy99I CGWCG 3 cut(s) 245, 251, 380
HpyAV CCTTC 3 cut(s) 152, 244, 395
HpyCH4III ACNGT 2 cut(s) 188, 228
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 55, 60, 203, 387
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 2 cut(s) 381, 395
Kzo9I GATC 1 cut(s) 266
LmnI GCTCC 1 cut(s) 348
LweI GCATC 2 cut(s) 10, 104
MaeI CTAG 2 cut(s) 110, 487
MaeIII GTNAC 1 cut(s) 325
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 1 cut(s) 113
MhlI GDGCHC 4 cut(s) 12, 35, 44, 353
MlyI GAGTC 1 cut(s) 486
MnlI CCTC 4 cut(s) 77, 118, 227, 350
MspI CCGG 5 cut(s) 29, 330, 354, 438, 474
MspR9I CCNGG 5 cut(s) 29, 30, 38, 45, 287
MvaI CCWGG 3 cut(s) 38, 45, 287
MvnI CGCG 2 cut(s) 383, 395
MwoI GCNNNNNNNGC 5 cut(s) 39, 55, 60, 203, 387
NciI CCSGG 2 cut(s) 29, 30
NdeII GATC 1 cut(s) 266
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 2 cut(s) 34, 42
NmuCI GTSAC 1 cut(s) 325
NspI RCATGY 1 cut(s) 151
PaeR7I CTCGAG 1 cut(s) 152
PasI CCCWGGG 2 cut(s) 37, 44
PcsI WCGNNNNNNNCGW 4 cut(s) 210, 243, 249, 255
PfeI GAWTC 1 cut(s) 310
PfoI TCCNGGA 1 cut(s) 285
PkrI GCNGC 1 cut(s) 367
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
PpuMI RGGWCCY 1 cut(s) 466
PshAI GACNNNNGTC 1 cut(s) 476
Psp5II RGGWCCY 1 cut(s) 466
Psp6I CCWGG 3 cut(s) 36, 43, 285
PspFI CCCAGC 1 cut(s) 193
PspGI CCWGG 3 cut(s) 36, 43, 285
PspN4I GGNNCC 2 cut(s) 34, 42
PspOMI GGGCCC 1 cut(s) 40
PspPI GGNCC 4 cut(s) 40, 41, 363, 466
PspPPI RGGWCCY 1 cut(s) 466
PspXI VCTCGAGB 1 cut(s) 152
RsaI GTAC 2 cut(s) 410, 422
RsaNI GTAC 2 cut(s) 409, 421
SatI GCNGC 1 cut(s) 366
Sau3AI GATC 1 cut(s) 266
Sau96I GGNCC 4 cut(s) 40, 41, 363, 466
SchI GAGTC 1 cut(s) 486
ScrFI CCNGG 5 cut(s) 29, 30, 38, 45, 287
SduI GDGCHC 4 cut(s) 12, 35, 44, 353
SetI ASST 5 cut(s) 182, 342, 392, 417, 471
SfaNI GCATC 2 cut(s) 10, 104
Sfr274I CTCGAG 1 cut(s) 152
SinI GGWCC 1 cut(s) 466
SlaI CTCGAG 1 cut(s) 152
SmaI CCCGGG 1 cut(s) 30
SmlI CTYRAG 3 cut(s) 152, 416, 461
SmoI CTYRAG 3 cut(s) 152, 416, 461
SpeI ACTAGT 1 cut(s) 109
SsiI CCGC 3 cut(s) 5, 366, 383
SspMI CTAG 2 cut(s) 110, 487
StyD4I CCNGG 5 cut(s) 27, 28, 36, 43, 285
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 188, 228
TaqI TCGA 5 cut(s) 123, 153, 342, 375, 399
TatI WGTACW 1 cut(s) 420
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 1 cut(s) 310
TseFI GTSAC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 325
TspMI CCCGGG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 466
XagI CCTNNNNNAGG 1 cut(s) 48
XceI RCATGY 1 cut(s) 151
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XhoI CTCGAG 1 cut(s) 152
XmaI CCCGGG 1 cut(s) 28
XspI CTAG 2 cut(s) 110, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.