Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015750

Physical Location & Seq

Genomic Coordinates Forward (+)

59102397 .. 59104918

Gene Structure 2522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26692

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAAGGAAGAAGGTCTGGCCTTGTGCATGAGAGTTCTTCTTCACAGATCAACTTGAAAGGGTTGGATGGCATCCAGGGTCCAGTTTATGTGGGAACTGGTTGCTGTTTCAACAGGCAAGCACTATATGGGTATGATCCTGTTTTGACTGAGGAAGATTTGGAACCAAACATCATATTAAAGAGTTGTTGTGGTTCAAGAAAGAAGGGAAAGACCAGCAATCAGAAGTATATTGACAAGAAGAGGGCTGTCAAAAGAACTGAATCGACCATTCCCATTTTCAATATGGAAGACATTGACGAGTTAAGGGTATATTTTCTCTTCATTGGCAGAGCTGGTTATGGCGCGCTCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

118

Amino Acids

13.14

Weight (kDa)

8.69

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	16 - 101	1.1e-23	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385591 RchiOBHm_Chr6g0297401
rosa_laevigata	RLG00000009216 RLG00000019703 RLG00000023657
rosa_roxburghii	Rroxscaffold_3G00255730 Rroxscaffold_7G00207230
rosa_rugosa	Rorug05G0461100
rosa_samantha	Rh2AG534100 Rh2CG518000 Rh5AG514500 Rh5BG327400 Rh5CG180700 Rh5DG338600 Rh6BG220300
rosa_wichuraiana	Rw7G037470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	347
AclWI	GGATC	1 cut(s)	131
AgsI	TTSAA	4 cut(s)	58, 112, 198, 283
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	347, 349
AspS9I	GGNCC	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	297
BccI	CCATC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	81, 165
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	83, 103
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	2 cut(s)	72, 73
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	83, 103
BsePI	GCGCGC	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	48, 136
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	347
BspLI	GGNNCC	2 cut(s)	81, 165
BspPI	GGATC	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	83, 103
BssECI	CCNNGG	1 cut(s)	76
BssHII	GCGCGC	1 cut(s)	345
BssMI	GATC	2 cut(s)	48, 136
Bst2UI	CCWGG	1 cut(s)	77
Bst6I	CTCTTC	2 cut(s)	236, 326
BstC8I	GCNNGC	2 cut(s)	120, 347
BstDEI	CTNAG	2 cut(s)	150, 350
BstF5I	GGATG	2 cut(s)	72, 73
BstFNI	CGCG	1 cut(s)	347
BstHHI	GCGC	2 cut(s)	347, 349
BstKTI	GATC	2 cut(s)	51, 139
BstMBI	GATC	2 cut(s)	48, 136
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	72, 73
Cac8I	GCNNGC	2 cut(s)	120, 347
CfoI	GCGC	2 cut(s)	347, 349
Cfr13I	GGNCC	1 cut(s)	80
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	3 cut(s)	21, 248, 335
CviKI_1	RGCY	3 cut(s)	21, 248, 335
DdeI	CTNAG	2 cut(s)	150, 350
DpnI	GATC	2 cut(s)	50, 138
DpnII	GATC	2 cut(s)	48, 136
Eam1104I	CTCTTC	2 cut(s)	236, 326
EarI	CTCTTC	2 cut(s)	236, 326
Eco47I	GGWCC	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	32
FatI	CATG	1 cut(s)	28
FokI	GGATG	2 cut(s)	59, 80
GlaI	GCGC	2 cut(s)	346, 348
HaeIII	GGCC	1 cut(s)	21
HhaI	GCGC	2 cut(s)	347, 349
Hin1II	CATG	1 cut(s)	32
Hin6I	GCGC	2 cut(s)	345, 347
HinP1I	GCGC	2 cut(s)	345, 347
HinfI	GANTC	1 cut(s)	263
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	1 cut(s)	198
HpyAV	CCTTC	2 cut(s)	6, 199
HpyCH4V	TGCA	1 cut(s)	28
HpyF3I	CTNAG	2 cut(s)	150, 350
Hsp92II	CATG	1 cut(s)	32
HspAI	GCGC	2 cut(s)	345, 347
Kzo9I	GATC	2 cut(s)	48, 136
LpnPI	CCDG	9 cut(s)	3, 62, 84, 89, 96, 100, 153, 229, 321
LweI	GCATC	1 cut(s)	81
MalI	GATC	2 cut(s)	50, 138
MboI	GATC	2 cut(s)	48, 136
MboII	GAAGA	7 cut(s)	21, 30, 33, 167, 253, 302, 313
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	2 cut(s)	145, 237
MseI	TTAA	3 cut(s)	179, 305, 355
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	347
NdeII	GATC	2 cut(s)	48, 136
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	2 cut(s)	81, 165
PauI	GCGCGC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	81, 165
PspPI	GGNCC	1 cut(s)	80
PteI	GCGCGC	1 cut(s)	345
SaqAI	TTAA	3 cut(s)	179, 305, 355
Sau3AI	GATC	2 cut(s)	48, 136
Sau96I	GGNCC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	2 cut(s)	17, 337
SfaNI	GCATC	1 cut(s)	81
SinI	GGWCC	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	75
TaqI	TCGA	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	3 cut(s)	179, 305, 355
Tru9I	TTAA	3 cut(s)	179, 305, 355
TspDTI	ATGAA	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.