Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0015750

Physical Location & Seq

Genomic Coordinates Forward (+)

44789006 .. 44790826

Gene Structure 1821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG327400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAAGGAAGAAGGTCTGGCCTTGTGCATGAGAGTTCTTCTTCACAGATTCGAGTTTCAGCTGTCCTGACAAATGGTGCATATCTTTTGAACGTCGATTGTGATCACTACTTCAATAACAATTCCAGGGCTCTTCAGAGAAATTCAACCGAAGCTATGATGGAGGCAAGGGTTGTTGATATTCTAAATGCAATGGAACCACTTGCATATAGGAAAATGGACTTTGAAGAATTTTGTGCTGCTGCAATTAGCACGCATCAATTGGAGGCCCTCGAAGGATGGGAGCAGATAGCATCTACTGCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010150 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

Pkinase

Protein Analysis

102

Amino Acids

11.43

Weight (kDa)

4.89

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	14 - 58	2e-10	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385591 RchiOBHm_Chr6g0297401
rosa_laevigata	RLG00000009216 RLG00000019703 RLG00000023657
rosa_roxburghii	Rroxscaffold_3G00255730 Rroxscaffold_7G00207230
rosa_rugosa	Rorug05G0461100
rosa_samantha	Rh2AG534100 Rh2CG518000 Rh5AG514500 Rh5BG327400 Rh5CG180700 Rh5DG338600 Rh6BG220300
rosa_wichuraiana	Rw7G037470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	142, 230
AcuI	CTGAAG	1 cut(s)	119
AgsI	TTSAA	4 cut(s)	91, 115, 147, 227
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	62, 155
AluI	AGCT	2 cut(s)	62, 155
AoxI	GGCC	2 cut(s)	19, 267
ApeKI	GCWGC	2 cut(s)	239, 242
ApoI	RAATTY	2 cut(s)	142, 230
AspS9I	GGNCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	133
BbvI	GCAGC	2 cut(s)	226, 229
BccI	CCATC	2 cut(s)	154, 273
BciT130I	CCWGG	1 cut(s)	127
BclI	TGATCA	1 cut(s)	103
BisI	GCNGC	2 cut(s)	240, 243
BlsI	GCNGC	2 cut(s)	241, 244
Bme1390I	CCNGG	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	2 cut(s)	265, 302
BsaBI	GATNNNNATC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	284
BseJI	GATNNNNATC	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	198
BseXI	GCAGC	2 cut(s)	226, 229
BshFI	GGCC	2 cut(s)	21, 269
BsnI	GGCC	2 cut(s)	21, 269
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	103
BspANI	GGCC	2 cut(s)	21, 269
BspLI	GGNNCC	1 cut(s)	198
BspQI	GCTCTTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	284
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	226, 229
BsuRI	GGCC	2 cut(s)	21, 269
BtsCI	GGATG	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	268
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	5 cut(s)	21, 62, 131, 155, 269
CviKI_1	RGCY	5 cut(s)	21, 62, 131, 155, 269
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	133
FaeI	CATG	1 cut(s)	32
FaiI	YATR	5 cut(s)	30, 82, 158, 208, 210
FatI	CATG	1 cut(s)	28
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	240, 243
FokI	GGATG	1 cut(s)	291
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	2 cut(s)	240, 243
GluI	GCNGC	2 cut(s)	240, 243
HaeIII	GGCC	2 cut(s)	21, 269
Hin1II	CATG	1 cut(s)	32
HinfI	GANTC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	6, 269
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	5 cut(s)	28, 80, 191, 206, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	32
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	103
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	4 cut(s)	3, 80, 112, 139
Lsp1109I	GCAGC	2 cut(s)	226, 229
LweI	GCATC	2 cut(s)	265, 302
MaeII	ACGT	1 cut(s)	93
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	5 cut(s)	21, 30, 33, 125, 239
MfeI	CAATTG	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	5 cut(s)	121, 142, 230, 246, 260
MnlI	CCTC	3 cut(s)	157, 259, 281
MseI	TTAA	1 cut(s)	307
MspA1I	CMGCKG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	127
MunI	CAATTG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	241, 244
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	307
SatI	GCNGC	2 cut(s)	240, 243
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	4 cut(s)	17, 64, 96, 157
SfaNI	GCATC	2 cut(s)	265, 302
Sse9I	AATT	5 cut(s)	121, 142, 230, 246, 260
StyD4I	CCNGG	1 cut(s)	125
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	52, 96, 273
TasI	AATT	5 cut(s)	121, 142, 230, 246, 260
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	307
Tru9I	TTAA	1 cut(s)	307
TseI	GCWGC	2 cut(s)	239, 242
XapI	RAATTY	2 cut(s)	142, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.