Protein SHOOT GRAVITROPISM
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0385591 RchiOBHm_Chr6g0297401 |
| rosa_laevigata | RLG00000009216 RLG00000019703 RLG00000023657 |
| rosa_roxburghii | Rroxscaffold_3G00255730 Rroxscaffold_7G00207230 |
| rosa_rugosa | Rorug05G0461100 |
| rosa_samantha | Rh2AG534100 Rh2CG518000 Rh5AG514500 Rh5BG327400 Rh5CG180700 Rh5DG338600 Rh6BG220300 |
| rosa_wichuraiana | Rw7G037470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 101, 146, 198 |
| AgsI | TTSAA | 1 cut(s) | 241 |
| AluBI | AGCT | 3 cut(s) | 41, 82, 124 |
| AluI | AGCT | 3 cut(s) | 41, 82, 124 |
| Alw21I | GWGCWC | 1 cut(s) | 126 |
| AspS9I | GGNCC | 1 cut(s) | 200 |
| AvaII | GGWCC | 1 cut(s) | 200 |
| BanII | GRGCYC | 1 cut(s) | 126 |
| BbsI | GAAGAC | 1 cut(s) | 60 |
| Bbv12I | GWGCWC | 1 cut(s) | 126 |
| BceAI | ACGGC | 1 cut(s) | 114 |
| BisI | GCNGC | 1 cut(s) | 146 |
| BlsI | GCNGC | 1 cut(s) | 147 |
| Bme18I | GGWCC | 1 cut(s) | 200 |
| BmgT120I | GGNCC | 1 cut(s) | 200 |
| BmiI | GGNNCC | 1 cut(s) | 144 |
| BmsI | GCATC | 2 cut(s) | 157, 205 |
| BpiI | GAAGAC | 1 cut(s) | 60 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 95, 127 |
| Bsa29I | ATCGAT | 1 cut(s) | 60 |
| BsaJI | CCNNGG | 2 cut(s) | 96, 117 |
| Bse118I | RCCGGY | 2 cut(s) | 134, 176 |
| Bse1I | ACTGG | 1 cut(s) | 223 |
| BseCI | ATCGAT | 1 cut(s) | 60 |
| BseDI | CCNNGG | 2 cut(s) | 96, 117 |
| BseNI | ACTGG | 1 cut(s) | 223 |
| BseRI | GAGGAG | 1 cut(s) | 103 |
| Bsh1285I | CGRYCG | 1 cut(s) | 135 |
| BshVI | ATCGAT | 1 cut(s) | 60 |
| BsiEI | CGRYCG | 1 cut(s) | 135 |
| BsiHKAI | GWGCWC | 1 cut(s) | 126 |
| BsiSI | CCGG | 2 cut(s) | 135, 177 |
| BsmI | GAATGC | 1 cut(s) | 218 |
| Bsp1286I | GDGCHC | 1 cut(s) | 126 |
| BspACI | CCGC | 3 cut(s) | 101, 146, 198 |
| BspDI | ATCGAT | 1 cut(s) | 60 |
| BspHI | TCATGA | 1 cut(s) | 72 |
| BspLI | GGNNCC | 1 cut(s) | 144 |
| BsrFI | RCCGGY | 2 cut(s) | 134, 176 |
| BsrI | ACTGG | 1 cut(s) | 223 |
| BssAI | RCCGGY | 2 cut(s) | 134, 176 |
| BssECI | CCNNGG | 2 cut(s) | 96, 117 |
| BssT1I | CCWWGG | 1 cut(s) | 117 |
| BstC8I | GCNNGC | 1 cut(s) | 84 |
| BstDEI | CTNAG | 1 cut(s) | 78 |
| BstDSI | CCRYGG | 1 cut(s) | 96 |
| BstMCI | CGRYCG | 1 cut(s) | 135 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 177 |
| BstV2I | GAAGAC | 1 cut(s) | 60 |
| Bsu15I | ATCGAT | 1 cut(s) | 60 |
| BsuTUI | ATCGAT | 1 cut(s) | 60 |
| BtgI | CCRYGG | 1 cut(s) | 96 |
| BtgZI | GCGATG | 1 cut(s) | 228 |
| Cac8I | GCNNGC | 1 cut(s) | 84 |
| CciI | TCATGA | 1 cut(s) | 72 |
| Cfr10I | RCCGGY | 2 cut(s) | 134, 176 |
| Cfr13I | GGNCC | 1 cut(s) | 200 |
| ClaI | ATCGAT | 1 cut(s) | 60 |
| CviAII | CATG | 1 cut(s) | 73 |
| CviJI | RGCY | 7 cut(s) | 5, 41, 82, 124, 145, 155, 180 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 41, 82, 124, 145, 155, 180 |
| DdeI | CTNAG | 1 cut(s) | 78 |
| EciI | GGCGGA | 1 cut(s) | 116 |
| Ecl136II | GAGCTC | 1 cut(s) | 124 |
| Eco130I | CCWWGG | 1 cut(s) | 117 |
| Eco24I | GRGCYC | 1 cut(s) | 126 |
| Eco47I | GGWCC | 1 cut(s) | 200 |
| Eco53kI | GAGCTC | 1 cut(s) | 124 |
| EcoICRI | GAGCTC | 1 cut(s) | 124 |
| EcoT14I | CCWWGG | 1 cut(s) | 117 |
| EcoT22I | ATGCAT | 1 cut(s) | 220 |
| EcoT38I | GRGCYC | 1 cut(s) | 126 |
| ErhI | CCWWGG | 1 cut(s) | 117 |
| FaeI | CATG | 1 cut(s) | 76 |
| FaiI | YATR | 5 cut(s) | 28, 30, 74, 174, 183 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 234, 266 |
| FatI | CATG | 1 cut(s) | 72 |
| FauNDI | CATATG | 1 cut(s) | 28 |
| Fnu4HI | GCNGC | 1 cut(s) | 146 |
| FriOI | GRGCYC | 1 cut(s) | 126 |
| Fsp4HI | GCNGC | 1 cut(s) | 146 |
| GluI | GCNGC | 1 cut(s) | 146 |
| HapII | CCGG | 2 cut(s) | 135, 177 |
| Hin1II | CATG | 1 cut(s) | 76 |
| HindIII | AAGCTT | 1 cut(s) | 80 |
| HinfI | GANTC | 2 cut(s) | 62, 185 |
| HpaII | CCGG | 2 cut(s) | 135, 177 |
| Hpy166II | GTNNAC | 1 cut(s) | 228 |
| Hpy188I | TCNGA | 1 cut(s) | 190 |
| Hpy188III | TCNNGA | 2 cut(s) | 73, 272 |
| Hpy8I | GTNNAC | 1 cut(s) | 228 |
| HpyCH4V | TGCA | 1 cut(s) | 218 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 177 |
| HpyF3I | CTNAG | 1 cut(s) | 78 |
| Hsp92II | CATG | 1 cut(s) | 76 |
| LmnI | GCTCC | 3 cut(s) | 38, 121, 142 |
| LpnPI | CCDG | 3 cut(s) | 148, 190, 236 |
| LweI | GCATC | 2 cut(s) | 157, 205 |
| MboII | GAAGA | 1 cut(s) | 65 |
| MhlI | GDGCHC | 1 cut(s) | 126 |
| MmeI | TCCRAC | 1 cut(s) | 16 |
| MnlI | CCTC | 4 cut(s) | 97, 124, 166, 238 |
| Mph1103I | ATGCAT | 1 cut(s) | 220 |
| MspI | CCGG | 2 cut(s) | 135, 177 |
| Mva1269I | GAATGC | 1 cut(s) | 218 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 177 |
| NdeI | CATATG | 1 cut(s) | 28 |
| NlaIII | CATG | 1 cut(s) | 76 |
| NlaIV | GGNNCC | 1 cut(s) | 144 |
| NsiI | ATGCAT | 1 cut(s) | 220 |
| PagI | TCATGA | 1 cut(s) | 72 |
| PctI | GAATGC | 1 cut(s) | 218 |
| PfeI | GAWTC | 2 cut(s) | 62, 185 |
| PkrI | GCNGC | 1 cut(s) | 147 |
| Psp124BI | GAGCTC | 1 cut(s) | 126 |
| PspN4I | GGNNCC | 1 cut(s) | 144 |
| PspPI | GGNCC | 1 cut(s) | 200 |
| SacI | GAGCTC | 1 cut(s) | 126 |
| SatI | GCNGC | 1 cut(s) | 146 |
| Sau96I | GGNCC | 1 cut(s) | 200 |
| SduI | GDGCHC | 1 cut(s) | 126 |
| SetI | ASST | 7 cut(s) | 43, 84, 108, 126, 205, 249, 268 |
| SfaNI | GCATC | 2 cut(s) | 157, 205 |
| SinI | GGWCC | 1 cut(s) | 200 |
| SsiI | CCGC | 3 cut(s) | 101, 146, 198 |
| SstI | GAGCTC | 1 cut(s) | 126 |
| StyI | CCWWGG | 1 cut(s) | 117 |
| TaqI | TCGA | 4 cut(s) | 60, 131, 151, 165 |
| TauI | GCSGC | 1 cut(s) | 148 |
| TfiI | GAWTC | 2 cut(s) | 62, 185 |
| TspDTI | ATGAA | 1 cut(s) | 61 |
| VpaK11BI | GGWCC | 1 cut(s) | 200 |
| Zsp2I | ATGCAT | 1 cut(s) | 220 |