Protein SHOOT GRAVITROPISM
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0385591 RchiOBHm_Chr6g0297401 |
| rosa_laevigata | RLG00000009216 RLG00000019703 RLG00000023657 |
| rosa_roxburghii | Rroxscaffold_3G00255730 Rroxscaffold_7G00207230 |
| rosa_rugosa | Rorug05G0461100 |
| rosa_samantha | Rh2AG534100 Rh2CG518000 Rh5AG514500 Rh5BG327400 Rh5CG180700 Rh5DG338600 Rh6BG220300 |
| rosa_wichuraiana | Rw7G037470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 67 |
| AciI | CCGC | 1 cut(s) | 194 |
| AcoI | YGGCCR | 1 cut(s) | 57 |
| AluBI | AGCT | 2 cut(s) | 134, 175 |
| AluI | AGCT | 2 cut(s) | 134, 175 |
| AoxI | GGCC | 1 cut(s) | 57 |
| BceAI | ACGGC | 3 cut(s) | 40, 44, 207 |
| BclI | TGATCA | 1 cut(s) | 229 |
| BmrI | ACTGGG | 1 cut(s) | 104 |
| BmsI | GCATC | 1 cut(s) | 229 |
| BmuI | ACTGGG | 1 cut(s) | 104 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 188, 220 |
| Bsa29I | ATCGAT | 1 cut(s) | 153 |
| BsaJI | CCNNGG | 2 cut(s) | 189, 210 |
| Bse1I | ACTGG | 1 cut(s) | 110 |
| BseCI | ATCGAT | 1 cut(s) | 153 |
| BseDI | CCNNGG | 2 cut(s) | 189, 210 |
| BseGI | GGATG | 1 cut(s) | 241 |
| BseNI | ACTGG | 1 cut(s) | 110 |
| BseRI | GAGGAG | 2 cut(s) | 84, 196 |
| BseX3I | CGGCCG | 1 cut(s) | 57 |
| Bsh1236I | CGCG | 1 cut(s) | 67 |
| Bsh1285I | CGRYCG | 1 cut(s) | 60 |
| BshFI | GGCC | 1 cut(s) | 59 |
| BshVI | ATCGAT | 1 cut(s) | 153 |
| BsiEI | CGRYCG | 1 cut(s) | 60 |
| BsnI | GGCC | 1 cut(s) | 59 |
| Bsp143I | GATC | 1 cut(s) | 229 |
| Bsp68I | TCGCGA | 1 cut(s) | 67 |
| BspACI | CCGC | 1 cut(s) | 194 |
| BspANI | GGCC | 1 cut(s) | 59 |
| BspDI | ATCGAT | 1 cut(s) | 153 |
| BspFNI | CGCG | 1 cut(s) | 67 |
| BspHI | TCATGA | 1 cut(s) | 165 |
| BsrI | ACTGG | 1 cut(s) | 110 |
| BssECI | CCNNGG | 2 cut(s) | 189, 210 |
| BssMI | GATC | 1 cut(s) | 229 |
| BssT1I | CCWWGG | 1 cut(s) | 210 |
| Bst4CI | ACNGT | 1 cut(s) | 50 |
| BstC8I | GCNNGC | 1 cut(s) | 177 |
| BstDEI | CTNAG | 1 cut(s) | 171 |
| BstDSI | CCRYGG | 1 cut(s) | 189 |
| BstF5I | GGATG | 1 cut(s) | 241 |
| BstFNI | CGCG | 1 cut(s) | 67 |
| BstKTI | GATC | 1 cut(s) | 232 |
| BstMBI | GATC | 1 cut(s) | 229 |
| BstMCI | CGRYCG | 1 cut(s) | 60 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 185 |
| BstUI | CGCG | 1 cut(s) | 67 |
| BstZI | CGGCCG | 1 cut(s) | 57 |
| Bsu15I | ATCGAT | 1 cut(s) | 153 |
| BsuRI | GGCC | 1 cut(s) | 59 |
| BsuTUI | ATCGAT | 1 cut(s) | 153 |
| BtgI | CCRYGG | 1 cut(s) | 189 |
| BtsCI | GGATG | 1 cut(s) | 241 |
| BtuMI | TCGCGA | 1 cut(s) | 67 |
| Cac8I | GCNNGC | 1 cut(s) | 177 |
| CciI | TCATGA | 1 cut(s) | 165 |
| ClaI | ATCGAT | 1 cut(s) | 153 |
| CviAII | CATG | 2 cut(s) | 94, 166 |
| CviJI | RGCY | 5 cut(s) | 20, 59, 98, 134, 175 |
| CviKI_1 | RGCY | 5 cut(s) | 20, 59, 98, 134, 175 |
| DdeI | CTNAG | 1 cut(s) | 171 |
| DpnI | GATC | 1 cut(s) | 231 |
| DpnII | GATC | 1 cut(s) | 229 |
| EaeI | YGGCCR | 1 cut(s) | 57 |
| EagI | CGGCCG | 1 cut(s) | 57 |
| EciI | GGCGGA | 1 cut(s) | 209 |
| EclXI | CGGCCG | 1 cut(s) | 57 |
| Eco130I | CCWWGG | 1 cut(s) | 210 |
| Eco52I | CGGCCG | 1 cut(s) | 57 |
| EcoT14I | CCWWGG | 1 cut(s) | 210 |
| ErhI | CCWWGG | 1 cut(s) | 210 |
| FaeI | CATG | 2 cut(s) | 97, 169 |
| FaiI | YATR | 6 cut(s) | 38, 95, 121, 123, 167, 222 |
| FatI | CATG | 2 cut(s) | 93, 165 |
| FauNDI | CATATG | 1 cut(s) | 121 |
| FbaI | TGATCA | 1 cut(s) | 229 |
| HaeIII | GGCC | 1 cut(s) | 59 |
| Hin1II | CATG | 2 cut(s) | 97, 169 |
| HindIII | AAGCTT | 1 cut(s) | 173 |
| HinfI | GANTC | 1 cut(s) | 155 |
| Hpy188III | TCNNGA | 4 cut(s) | 44, 66, 166, 233 |
| Hpy99I | CGWCG | 1 cut(s) | 26 |
| HpyAV | CCTTC | 1 cut(s) | 72 |
| HpyCH4III | ACNGT | 1 cut(s) | 50 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 185 |
| HpyF3I | CTNAG | 1 cut(s) | 171 |
| Hsp92II | CATG | 2 cut(s) | 97, 169 |
| Ksp22I | TGATCA | 1 cut(s) | 229 |
| Kzo9I | GATC | 1 cut(s) | 229 |
| LmnI | GCTCC | 1 cut(s) | 131 |
| LpnPI | CCDG | 4 cut(s) | 45, 84, 123, 218 |
| LweI | GCATC | 1 cut(s) | 229 |
| MaeIII | GTNAC | 1 cut(s) | 89 |
| MalI | GATC | 1 cut(s) | 231 |
| MboI | GATC | 1 cut(s) | 229 |
| MmeI | TCCRAC | 1 cut(s) | 109 |
| MnlI | CCTC | 3 cut(s) | 62, 65, 217 |
| MvnI | CGCG | 1 cut(s) | 67 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 185 |
| NdeI | CATATG | 1 cut(s) | 121 |
| NdeII | GATC | 1 cut(s) | 229 |
| NlaIII | CATG | 2 cut(s) | 97, 169 |
| NmeAIII | GCCGAG | 1 cut(s) | 35 |
| NruI | TCGCGA | 1 cut(s) | 67 |
| PagI | TCATGA | 1 cut(s) | 165 |
| PfeI | GAWTC | 1 cut(s) | 155 |
| RruI | TCGCGA | 1 cut(s) | 67 |
| Sau3AI | GATC | 1 cut(s) | 229 |
| SetI | ASST | 3 cut(s) | 136, 177, 216 |
| SfaNI | GCATC | 1 cut(s) | 229 |
| SsiI | CCGC | 1 cut(s) | 194 |
| StyI | CCWWGG | 1 cut(s) | 210 |
| TaaI | ACNGT | 1 cut(s) | 50 |
| TaqI | TCGA | 1 cut(s) | 153 |
| TfiI | GAWTC | 1 cut(s) | 155 |
| TspDTI | ATGAA | 2 cut(s) | 30, 154 |