Rh2AG534100

1-deoxy-D-xylulose-5-phosphate synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0015750
Physical Location & Seq
Reverse (-)
76304218 .. 76305048
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG534100.1

Sequence Viewer

Length: 264 bp
ATGCTGGAAACACGGAAGTCTTTTAAAGCCAGTTTGGCAGTAGCGGATTTGACAATTGCAATACACCATGTTTTCCATGCACCGGTTGATAAGATACTATGGGATGCTATAGAACAACTGAGAGTGAATATGATCCATTTGGGGCAGGGCATGGGTGCAACAGTGTTTCAGCTGGACTTGCAACAGGAGGATCTGGAATGTGCAAGCTCTTGCCCAGTAATGCTGATCGTTTGTGTAGAGGAGAGTAACAACCATCAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00730 ko00900 ko01100 ko01110 ko01130 map00730 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
DXP_synthase_N Transket_pyr Transketolase_C

Protein Analysis

87

Amino Acids

9.66

Weight (kDa)

5.09

Isoelectric Point (pI)

54.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DXP_synthase_N PF13292 8 - 40 3.1e-06 1-deoxy-D-xylulose-5-phosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AclWI GGATC 2 cut(s) 127, 198
AfiI CCNNNNNNNGG 1 cut(s) 82
AgeI ACCGGT 1 cut(s) 82
AluBI AGCT 2 cut(s) 172, 207
AluI AGCT 2 cut(s) 172, 207
AlwI GGATC 2 cut(s) 127, 198
AsiGI ACCGGT 1 cut(s) 82
BccI CCATC 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 108
BglI GCCNNNNNGGC 1 cut(s) 35
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 209
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 30, 215
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 2 cut(s) 30, 215
BseRI GAGGAG 1 cut(s) 254
BshTI ACCGGT 1 cut(s) 82
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 82
Bsp143I GATC 3 cut(s) 132, 190, 225
BspACI CCGC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 111
BspPI GGATC 2 cut(s) 127, 198
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 2 cut(s) 30, 215
BssAI RCCGGY 1 cut(s) 82
BssMI GATC 3 cut(s) 132, 190, 225
Bst4CI ACNGT 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 3 cut(s) 135, 193, 228
BstMBI GATC 3 cut(s) 132, 190, 225
BstMWI GCNNNNNNNGC 2 cut(s) 35, 178
BstSFI CTRYAG 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 82
CspAI ACCGGT 1 cut(s) 82
CviAII CATG 3 cut(s) 68, 77, 151
CviJI RGCY 3 cut(s) 29, 172, 207
CviKI_1 RGCY 3 cut(s) 29, 172, 207
DdeI CTNAG 1 cut(s) 119
DpnI GATC 3 cut(s) 134, 192, 227
DpnII GATC 3 cut(s) 132, 190, 225
DraI TTTAAA 1 cut(s) 25
FaeI CATG 3 cut(s) 71, 80, 154
FaiI YATR 6 cut(s) 69, 78, 100, 110, 131, 152
FatI CATG 3 cut(s) 67, 76, 150
FokI GGATG 1 cut(s) 116
HapII CCGG 1 cut(s) 83
Hin1II CATG 3 cut(s) 71, 80, 154
HpaII CCGG 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 5 cut(s) 59, 80, 158, 181, 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 178
HpyF3I CTNAG 1 cut(s) 119
Hsp92II CATG 3 cut(s) 71, 80, 154
Kzo9I GATC 3 cut(s) 132, 190, 225
LpnPI CCDG 7 cut(s) 43, 96, 131, 158, 170, 179, 228
LweI GCATC 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 245
MalI GATC 3 cut(s) 134, 192, 227
MboI GATC 3 cut(s) 132, 190, 225
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 1 cut(s) 190
MluCI AATT 1 cut(s) 54
MnlI CCTC 2 cut(s) 181, 232
MseI TTAA 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 1 cut(s) 83
MunI CAATTG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 35, 178
NdeII GATC 3 cut(s) 132, 190, 225
NlaIII CATG 3 cut(s) 71, 80, 154
PinAI ACCGGT 1 cut(s) 82
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 172
SaqAI TTAA 1 cut(s) 24
Sau3AI GATC 3 cut(s) 132, 190, 225
SetI ASST 3 cut(s) 174, 209, 262
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 108
Sse9I AATT 1 cut(s) 54
SsiI CCGC 1 cut(s) 44
TaaI ACNGT 1 cut(s) 163
TasI AATT 1 cut(s) 54
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 1 cut(s) 168
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.