Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004005

Physical Location & Seq

Genomic Coordinates Forward (+)

4845580 .. 4847388

Gene Structure 1809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36292

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCTCAATTTGCAGCTTGGAATTAGGCATTCTGTTGGAAGACCAAGGCCGTCTGGATCCCTTGATCTAAAGCCTTCTGCTTTCGACCCCAGAGAAAAATATTGGACAAGGTTTCCTCCTGAAGGATCCAAATACACTCCACCACACCAATCTTGTGAATTTAAATGGAAGGATTATTGTCCTTTAGTCTTCAGAACTCTTAGGAAGTTGTTCAAGGTGGATGCAGCTGACTGCATGCTCTCTATCTGTGGGAACGATGCTCTTCGAGAACTTTCTTCTCCTGGTAAAAGTGGTAACTTCTTTTACTTGACTAATGATGACCGATACGTGATTAAAACAATGAAGAAAGCAGAAGTAAAAGTTCTTATAAGGATGCTCTCTGCCTATTACAACCATGTTCGAGCATATGAGAATACGCTGGTCACTAAATTTTATGGTCTACACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006897 GO:0007164 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010118 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042545 GO:0042995 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090406 GO:0098590 GO:0098657 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

149

Amino Acids

17.29

Weight (kDa)

9.49

Isoelectric Point (pI)

26.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	82 - 149	3.3e-29	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41210 AT3G56960 AT3G56960
fragaria_vesca	FvH4_6g25450
malus_domestica	MD14G1087700.v1.1
prunus_persica	Prupe.1G504300_v2.0.a1 Prupe.3G181700_v2.0.a1 Prupe.7G038800_v2.0.a1 Prupe.8G042800_v2.0.a1
pyrus_communis	pycom1481g00110 pycom14g07780
rosa_chinensis	RchiOBHm_Chr2g0125511 RchiOBHm_Chr3g0486631 RchiOBHm_Chr4g0389821 RchiOBHm_Chr4g0389831 RchiOBHm_Chr7g0202621
rosa_laevigata	RLG00000004364 RLG00000014288 RLG00000018868
rosa_multiflora	Rmu_co8380969.1_g000001 Rmu_sc0001493.1_g000011 Rmu_sc0004504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117950
rosa_rugosa	Rorug02G0257800 Rorug02G0257800
rosa_samantha	Rh2AG316600 Rh2AG506900 Rh2BG324300 Rh2CG306400 Rh2DG342700 Rh5AG307600
rosa_wichuraiana	Rw2G025540 Rw3G020770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AccI	GTMKAC	1 cut(s)	439
AclWI	GGATC	4 cut(s)	51, 64, 120, 133
AcsI	RAATTY	2 cut(s)	158, 428
AcuI	CTGAAG	2 cut(s)	141, 175
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	2 cut(s)	16, 227
AluI	AGCT	2 cut(s)	16, 227
AlwI	GGATC	4 cut(s)	51, 64, 120, 133
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	13, 224
ApoI	RAATTY	2 cut(s)	158, 428
Asp700I	GAANNNNTTC	1 cut(s)	209
BamHI	GGATCC	2 cut(s)	56, 125
BbsI	GAAGAC	2 cut(s)	46, 181
BbvI	GCAGC	2 cut(s)	25, 236
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	14, 225
BlsI	GCNGC	2 cut(s)	15, 226
Bme1390I	CCNGG	1 cut(s)	282
BmiI	GGNNCC	2 cut(s)	58, 127
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	3 cut(s)	211, 247, 363
BpiI	GAAGAC	2 cut(s)	46, 181
BsaAI	YACGTR	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	2 cut(s)	226, 378
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	25, 236
BshFI	GGCC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	56, 64, 125
BspANI	GGCC	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	58, 127
BspPI	GGATC	4 cut(s)	51, 64, 120, 133
BspQI	GCTCTTC	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	3 cut(s)	56, 64, 125
BssT1I	CCWWGG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	282
Bst6I	CTCTTC	1 cut(s)	267
BstBAI	YACGTR	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	200
BstENI	CCTNNNNNAGG	1 cut(s)	120
BstF5I	GGATG	2 cut(s)	226, 378
BstKTI	GATC	3 cut(s)	59, 67, 128
BstMBI	GATC	3 cut(s)	56, 64, 125
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	25, 236
BstV2I	GAAGAC	2 cut(s)	46, 181
BstX2I	RGATCY	2 cut(s)	56, 125
BstYI	RGATCY	2 cut(s)	56, 125
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	226, 378
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	236
CviAII	CATG	2 cut(s)	235, 395
CviJI	RGCY	4 cut(s)	16, 49, 73, 227
CviKI_1	RGCY	4 cut(s)	16, 49, 73, 227
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	3 cut(s)	58, 66, 127
DpnII	GATC	3 cut(s)	56, 64, 125
DraI	TTTAAA	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	44
Eco57I	CTGAAG	2 cut(s)	141, 175
EcoNI	CCTNNNNNAGG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	2 cut(s)	238, 398
FaiI	YATR	6 cut(s)	236, 368, 396, 406, 408, 435
FatI	CATG	2 cut(s)	234, 394
FauNDI	CATATG	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	439
Fnu4HI	GCNGC	2 cut(s)	14, 225
FokI	GGATG	2 cut(s)	233, 385
Fsp4HI	GCNGC	2 cut(s)	14, 225
GluI	GCNGC	2 cut(s)	14, 225
HaeIII	GGCC	1 cut(s)	49
Hin1II	CATG	2 cut(s)	238, 398
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	3 cut(s)	54, 119, 266
Hpy8I	GTNNAC	1 cut(s)	440
HpyAV	CCTTC	3 cut(s)	84, 116, 163
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	3 cut(s)	13, 224, 234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	238, 398
Kzo9I	GATC	3 cut(s)	56, 64, 125
LguI	GCTCTTC	1 cut(s)	267
LpnPI	CCDG	6 cut(s)	39, 103, 132, 267, 294, 404
Lsp1109I	GCAGC	2 cut(s)	25, 236
LweI	GCATC	3 cut(s)	211, 247, 363
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	293, 421
MalI	GATC	3 cut(s)	58, 66, 127
MboI	GATC	3 cut(s)	56, 64, 125
MboII	GAAGA	5 cut(s)	51, 181, 254, 267, 355
MflI	RGATCY	2 cut(s)	56, 125
MluCI	AATT	4 cut(s)	7, 21, 158, 428
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	1 cut(s)	126
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	2 cut(s)	162, 333
MspA1I	CMGCKG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	3 cut(s)	56, 64, 125
NlaIII	CATG	2 cut(s)	238, 398
NlaIV	GGNNCC	2 cut(s)	58, 127
NmuCI	GTSAC	1 cut(s)	421
NspI	RCATGY	1 cut(s)	238
PaeI	GCATGC	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	267
PctI	GAATGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	15, 226
Ppu21I	YACGTR	1 cut(s)	328
PsiI	TTATAA	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	58, 127
PsuI	RGATCY	2 cut(s)	56, 125
PvuII	CAGCTG	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	162, 333
SatI	GCNGC	2 cut(s)	14, 225
Sau3AI	GATC	3 cut(s)	56, 64, 125
ScrFI	CCNGG	1 cut(s)	282
SetI	ASST	5 cut(s)	18, 113, 219, 229, 330
SfaNI	GCATC	3 cut(s)	211, 247, 363
SmiI	ATTTAAAT	1 cut(s)	163
SphI	GCATGC	1 cut(s)	238
Sse9I	AATT	4 cut(s)	7, 21, 158, 428
SspI	AATATT	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	44
SwaI	ATTTAAAT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	3 cut(s)	84, 265, 400
TaqII	GACCGA	1 cut(s)	336
TasI	AATT	4 cut(s)	7, 21, 158, 428
Tru1I	TTAA	2 cut(s)	162, 333
Tru9I	TTAA	2 cut(s)	162, 333
TscAI	CASTG	1 cut(s)	449
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	2 cut(s)	13, 224
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	449
XagI	CCTNNNNNAGG	1 cut(s)	120
XapI	RAATTY	2 cut(s)	158, 428
XceI	RCATGY	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	439
XmnI	GAANNNNTTC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.