Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001493.1

Orthogroup ID

OG0004005

Physical Location & Seq

Genomic Coordinates Forward (+)

46514 .. 47105

Gene Structure 592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001493.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgatcagtaggggccacaaaaattatgaactcatgctcaatttgcagcttggaattaggcattctgttggaagaccagggccgtctggatcccttgatctaaagccttcggctttcgacccaagagaaaaatattggacaaggttttctcctgaaggatccaaatacactccaccacaccaatcttgtgaatttaaatggaaggattattgtcctttagtcttcagaactcttaggaagttgttcaaggtggatgcaactgactacatgctctctatctgtgggaacgatgctcctcgagaactttcttctcctggtaaaagtggtaacttcttttacttgactaatgatgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006897 GO:0007164 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010118 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042545 GO:0042995 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090406 GO:0098590 GO:0098657 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

118

Amino Acids

13.55

Weight (kDa)

9.03

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41210 AT3G56960 AT3G56960
fragaria_vesca	FvH4_6g25450
malus_domestica	MD14G1087700.v1.1
prunus_persica	Prupe.1G504300_v2.0.a1 Prupe.3G181700_v2.0.a1 Prupe.7G038800_v2.0.a1 Prupe.8G042800_v2.0.a1
pyrus_communis	pycom1481g00110 pycom14g07780
rosa_chinensis	RchiOBHm_Chr2g0125511 RchiOBHm_Chr3g0486631 RchiOBHm_Chr4g0389821 RchiOBHm_Chr4g0389831 RchiOBHm_Chr7g0202621
rosa_laevigata	RLG00000004364 RLG00000014288 RLG00000018868
rosa_multiflora	Rmu_co8380969.1_g000001 Rmu_sc0001493.1_g000011 Rmu_sc0004504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117950
rosa_rugosa	Rorug02G0257800 Rorug02G0257800
rosa_samantha	Rh2AG316600 Rh2AG506900 Rh2BG324300 Rh2CG306400 Rh2DG342700 Rh5AG307600
rosa_wichuraiana	Rw2G025540 Rw3G020770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	84, 97, 153, 166
AcsI	RAATTY	1 cut(s)	191
AcuI	CTGAAG	2 cut(s)	174, 208
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	2 cut(s)	76, 313
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
AlwI	GGATC	4 cut(s)	84, 97, 153, 166
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	2 cut(s)	13, 80
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	13, 80
AvaI	CYCGRG	1 cut(s)	297
BamHI	GGATCC	2 cut(s)	89, 158
BbsI	GAAGAC	2 cut(s)	79, 214
BbvI	GCAGC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	2 cut(s)	78, 315
BclI	TGATCA	1 cut(s)	3
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	2 cut(s)	78, 315
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	2 cut(s)	13, 80
BmiI	GGNNCC	3 cut(s)	14, 91, 160
BmrFI	CCNGG	2 cut(s)	78, 315
BmsI	GCATC	2 cut(s)	244, 280
BpiI	GAAGAC	2 cut(s)	79, 214
BsaJI	CCNNGG	1 cut(s)	77
BseBI	CCWGG	2 cut(s)	78, 315
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	15, 82
BsiHKCI	CYCGRG	1 cut(s)	297
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	15, 82
BsoBI	CYCGRG	1 cut(s)	297
Bsp143I	GATC	4 cut(s)	3, 89, 97, 158
BspANI	GGCC	2 cut(s)	15, 82
BspLI	GGNNCC	3 cut(s)	14, 91, 160
BspPI	GGATC	4 cut(s)	84, 97, 153, 166
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	4 cut(s)	3, 89, 97, 158
Bst2UI	CCWGG	2 cut(s)	78, 315
BstDEI	CTNAG	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	4 cut(s)	6, 92, 100, 161
BstMBI	GATC	4 cut(s)	3, 89, 97, 158
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	2 cut(s)	78, 315
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	76, 313
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	2 cut(s)	79, 214
BstX2I	RGATCY	2 cut(s)	89, 158
BstYI	RGATCY	2 cut(s)	89, 158
BsuRI	GGCC	2 cut(s)	15, 82
BtsCI	GGATG	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	13, 80
CviAII	CATG	2 cut(s)	34, 268
CviJI	RGCY	5 cut(s)	15, 49, 82, 106, 113
CviKI_1	RGCY	5 cut(s)	15, 49, 82, 106, 113
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	4 cut(s)	5, 91, 99, 160
DpnII	GATC	4 cut(s)	3, 89, 97, 158
DraI	TTTAAA	1 cut(s)	196
Eco57I	CTGAAG	2 cut(s)	174, 208
Eco88I	CYCGRG	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	76, 313
FaeI	CATG	2 cut(s)	37, 271
FaiI	YATR	3 cut(s)	27, 35, 269
FatI	CATG	2 cut(s)	33, 267
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	15, 82
Hin1II	CATG	2 cut(s)	37, 271
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	3 cut(s)	87, 152, 299
HpyAV	CCTTC	3 cut(s)	117, 149, 196
HpyCH4V	TGCA	2 cut(s)	46, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	37, 271
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 89, 97, 158
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	6 cut(s)	63, 72, 90, 165, 300, 327
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	2 cut(s)	244, 280
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	4 cut(s)	5, 91, 99, 160
MboI	GATC	4 cut(s)	3, 89, 97, 158
MboII	GAAGA	3 cut(s)	84, 214, 300
MflI	RGATCY	2 cut(s)	89, 158
MluCI	AATT	4 cut(s)	22, 40, 54, 191
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	1 cut(s)	306
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	78, 315
Mva1269I	GAATGC	1 cut(s)	61
MvaI	CCWGG	2 cut(s)	78, 315
MwoI	GCNNNNNNNGC	1 cut(s)	43
NdeII	GATC	4 cut(s)	3, 89, 97, 158
NlaIII	CATG	2 cut(s)	37, 271
NlaIV	GGNNCC	3 cut(s)	14, 91, 160
NspI	RCATGY	1 cut(s)	271
PaeR7I	CTCGAG	1 cut(s)	297
PctI	GAATGC	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	76, 313
PspGI	CCWGG	2 cut(s)	76, 313
PspN4I	GGNNCC	3 cut(s)	14, 91, 160
PspPI	GGNCC	2 cut(s)	13, 80
PsuI	RGATCY	2 cut(s)	89, 158
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	4 cut(s)	3, 89, 97, 158
Sau96I	GGNCC	2 cut(s)	13, 80
ScrFI	CCNGG	2 cut(s)	78, 315
SetI	ASST	3 cut(s)	51, 146, 252
SfaNI	GCATC	2 cut(s)	244, 280
Sfr274I	CTCGAG	1 cut(s)	297
SlaI	CTCGAG	1 cut(s)	297
SmiI	ATTTAAAT	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	4 cut(s)	22, 40, 54, 191
SspI	AATATT	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	76, 313
SwaI	ATTTAAAT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	117, 298
TasI	AATT	4 cut(s)	22, 40, 54, 191
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseI	GCWGC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	42
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.