Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004005

Physical Location & Seq

Genomic Coordinates Reverse (-)

27139411 .. 27160491

Gene Structure 21081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0257800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGTGCAGCTAAGAAGTTGTTTTTGCACACTTGCATTCATTCTTCTACATATTTTATACCAGCCATCTACCGCTGCTGCTGCTGATGAGACCGCAGCTATTGACAATGTCTTAAGCTTTGGAGCTAAACGCAATGGCGTAACTGATTCAACCCAAGCTTTTCTTGATGCGTGGGCTGCTGCCTGTGCCTCCCCAGATTTAGCCGAGATAAATGTACCAAAAGGGAGGTATTTGCTCAACTCTATGACCTTTAAAGGTGACTGCAAGAGCCCACAGATTACTTTCCGGATTGATGGAACGCTCGTAGCTTCACCTGATTTCCGAGTCCTAGGCCAAGCCAACAATTGGCTCGGTTTTGAAGGAGTCAGCGGGGTAACCATTATTGGTGGAACACTTGACGCCAAGGGTTCTGCATTGTGGGCTTGCAAATTGAGCACCAAAGCCTCCAATTGTCCTGATGGCGCCACGAGTTTGAGTTTTACGAACTCCAAAAACATTAGAGTCGAGGGGCTAATGTCATTGAACAGCCAGATGTACCACATTGTCATAAACGGCTGCCAAGATGTTCTCATTCAAGGCGTCAAAGTCATTGCTGCTGGCAATAGCCCAAACACCGATGGCATCCATGTCCAGTTCTCGAAAAATGTTGCAATCTTCGACACCTCCATCAAAACAGGGGACGATTGTGTCTCTATTGGTCCCGGCACCAAGGACTTATGGATGGAGCACATATCATGCGGTCCTGGCCACGGCATTAGCATTGGGAGCCTAGCCAAGGACTTGGAAGAGGAAGGGGTACAAAATGTAACGGTCAAAAATGCGATTTTTAAGGGCACCCAAAATGGTGTGAGGATAAAGTCTTGGGCGAGACGTAGCAACGGGTTTGTCCAAGGTGTCCAATTTCTTGACGTTGAAATGGTTGATGTCCAAAACCCTATTGTAATTGACCAAAATTACTGCCCACACAACCTTAACTGCCCTGCTCAGGTATCAGGCGTGAAAATTAGTGATGTATTGTATCAAAACATTCGAGGAACATCAGCAACAGCAGTCGCAGTAAAATTTGCTTGTAGTGCAGCAAATCCATGCAGTGGGATAATACTTGAAAACGTGAATTTGGCGTGCCGGAATCAAGTGGTGGAATCGTATTGTACAAATGCAATCGGAAAGACTTTCGGCACTGTTCAACCTACGAGTTGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006897 GO:0007164 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010118 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042545 GO:0042995 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090406 GO:0098590 GO:0098657 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

401

Amino Acids

42.58

Weight (kDa)

6.3

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	62 - 387	1.7e-86	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41210 AT3G56960 AT3G56960
fragaria_vesca	FvH4_6g25450
malus_domestica	MD14G1087700.v1.1
prunus_persica	Prupe.1G504300_v2.0.a1 Prupe.3G181700_v2.0.a1 Prupe.7G038800_v2.0.a1 Prupe.8G042800_v2.0.a1
pyrus_communis	pycom1481g00110 pycom14g07780
rosa_chinensis	RchiOBHm_Chr2g0125511 RchiOBHm_Chr3g0486631 RchiOBHm_Chr4g0389821 RchiOBHm_Chr4g0389831 RchiOBHm_Chr7g0202621
rosa_laevigata	RLG00000004364 RLG00000014288 RLG00000018868
rosa_multiflora	Rmu_co8380969.1_g000001 Rmu_sc0001493.1_g000011 Rmu_sc0004504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117950
rosa_rugosa	Rorug02G0257800 Rorug02G0257800
rosa_samantha	Rh2AG316600 Rh2AG506900 Rh2BG324300 Rh2CG306400 Rh2DG342700 Rh5AG307600
rosa_wichuraiana	Rw2G025540 Rw3G020770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1204
AasI	GACNNNNNNGTC	1 cut(s)	686
AccB1I	GGYRCC	3 cut(s)	461, 704, 833
AccB7I	CCANNNNNTGG	2 cut(s)	345, 1091
AccIII	TCCGGA	1 cut(s)	285
AciI	CCGC	4 cut(s)	72, 93, 369, 738
AcoI	YGGCCR	1 cut(s)	745
AcsI	RAATTY	2 cut(s)	1061, 1114
AcyI	GRCGYC	3 cut(s)	399, 462, 579
AfaI	GTAC	4 cut(s)	216, 536, 798, 1153
AfiI	CCNNNNNNNGG	5 cut(s)	345, 749, 775, 985, 1091
AflII	CTTAAG	1 cut(s)	112
AgsI	TTSAA	7 cut(s)	150, 359, 523, 575, 914, 1106, 1187
AjnI	CCWGG	1 cut(s)	742
AluBI	AGCT	6 cut(s)	10, 98, 117, 125, 158, 308
AluI	AGCT	6 cut(s)	10, 98, 117, 125, 158, 308
Alw21I	GWGCWC	2 cut(s)	437, 729
Alw26I	GTCTC	3 cut(s)	83, 694, 862
Aor13HI	TCCGGA	1 cut(s)	285
AoxI	GGCC	2 cut(s)	331, 745
ApoI	RAATTY	2 cut(s)	1061, 1114
AspA2I	CCTAGG	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	464
AspS9I	GGNCC	2 cut(s)	698, 740
AsuC2I	CCSGG	1 cut(s)	702
AsuHPI	GGTGA	2 cut(s)	269, 303
AvaII	GGWCC	2 cut(s)	698, 740
AvrII	CCTAGG	1 cut(s)	328
BaeGI	GKGCMC	1 cut(s)	836
BalI	TGGCCA	1 cut(s)	747
BanI	GGYRCC	3 cut(s)	461, 704, 833
BanII	GRGCYC	1 cut(s)	272
BauI	CACGAG	1 cut(s)	466
Bbv12I	GWGCWC	2 cut(s)	437, 729
BccI	CCATC	6 cut(s)	73, 287, 452, 611, 674, 715
BceAI	ACGGC	2 cut(s)	568, 766
BciT130I	CCWGG	1 cut(s)	744
BcnI	CCSGG	1 cut(s)	702
BcoDI	GTCTC	3 cut(s)	83, 694, 862
BfaI	CTAG	2 cut(s)	329, 770
BfoI	RGCGCY	1 cut(s)	465
BfrI	CTTAAG	1 cut(s)	112
BlnI	CCTAGG	1 cut(s)	328
Bme1390I	CCNGG	2 cut(s)	702, 744
Bme18I	GGWCC	2 cut(s)	698, 740
BmgT120I	GGNCC	2 cut(s)	698, 740
BmiI	GGNNCC	5 cut(s)	463, 700, 706, 767, 835
BmrFI	CCNGG	2 cut(s)	702, 744
BmsI	GCATC	2 cut(s)	157, 630
Bpu10I	CCTNAGC	1 cut(s)	984
BpuMI	CCSGG	1 cut(s)	702
BsaHI	GRCGYC	3 cut(s)	399, 462, 579
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	6 cut(s)	328, 402, 708, 748, 774, 889
BsaWI	WCCGGW	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	5 cut(s)	345, 749, 775, 985, 1091
Bse1I	ACTGG	1 cut(s)	631
Bse3DI	GCAATG	2 cut(s)	139, 588
BseAI	TCCGGA	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	744
BseDI	CCNNGG	6 cut(s)	328, 402, 708, 748, 774, 889
BseGI	GGATG	2 cut(s)	621, 726
BseLI	CCNNNNNNNGG	5 cut(s)	345, 749, 775, 985, 1091
BseMI	GCAATG	2 cut(s)	139, 588
BseMII	CTCAG	1 cut(s)	998
BseNI	ACTGG	1 cut(s)	631
BseSI	GKGCMC	1 cut(s)	836
BsgI	GTGCAG	2 cut(s)	26, 1095
BshFI	GGCC	2 cut(s)	333, 747
BshNI	GGYRCC	3 cut(s)	461, 704, 833
BsiHKAI	GWGCWC	2 cut(s)	437, 729
BsiSI	CCGG	3 cut(s)	286, 702, 1126
BslFI	GGGAC	2 cut(s)	684, 692
BslI	CCNNNNNNNGG	5 cut(s)	345, 749, 775, 985, 1091
BsmAI	GTCTC	3 cut(s)	83, 694, 862
BsmBI	CGTCTC	1 cut(s)	862
BsmFI	GGGAC	2 cut(s)	684, 692
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	333, 747
Bso31I	GGTCTC	1 cut(s)	83
Bsp1286I	GDGCHC	4 cut(s)	272, 437, 729, 836
Bsp13I	TCCGGA	1 cut(s)	285
Bsp1407I	TGTACA	1 cut(s)	1151
BspACI	CCGC	4 cut(s)	72, 93, 369, 738
BspANI	GGCC	2 cut(s)	333, 747
BspCNI	CTCAG	1 cut(s)	997
BspEI	TCCGGA	1 cut(s)	285
BspLI	GGNNCC	5 cut(s)	463, 700, 706, 767, 835
BspT107I	GGYRCC	3 cut(s)	461, 704, 833
BspTI	CTTAAG	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	139, 588
BsrGI	TGTACA	1 cut(s)	1151
BsrI	ACTGG	1 cut(s)	631
BssECI	CCNNGG	6 cut(s)	328, 402, 708, 748, 774, 889
BssNI	GRCGYC	3 cut(s)	399, 462, 579
BssSI	CACGAG	1 cut(s)	466
BssT1I	CCWWGG	5 cut(s)	328, 402, 708, 774, 889
Bst2BI	CACGAG	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	2 cut(s)	811, 1183
Bst6I	CTCTTC	1 cut(s)	780
BstACI	GRCGYC	3 cut(s)	399, 462, 579
BstAFI	CTTAAG	1 cut(s)	112
BstAUI	TGTACA	1 cut(s)	1151
BstC8I	GCNNGC	3 cut(s)	424, 598, 1123
BstDEI	CTNAG	2 cut(s)	11, 984
BstDSI	CCRYGG	1 cut(s)	748
BstEII	GGTNACC	1 cut(s)	373
BstENI	CCTNNNNNAGG	1 cut(s)	773
BstF5I	GGATG	2 cut(s)	621, 726
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	1 cut(s)	464
BstMAI	GTCTC	3 cut(s)	83, 694, 862
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 176, 185, 419, 432, 744, 765, 1073
BstNI	CCWGG	1 cut(s)	744
BstPI	GGTNACC	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	700, 742
BstSLI	GKGCMC	1 cut(s)	836
BstXI	CCANNNNNNTGG	1 cut(s)	781
BsuRI	GGCC	2 cut(s)	333, 747
BtgI	CCRYGG	1 cut(s)	748
BtsCI	GGATG	2 cut(s)	621, 726
BtsI	GCAGTG	1 cut(s)	1096
BtsIMutI	CAGTG	2 cut(s)	1096, 1179
Cac8I	GCNNGC	3 cut(s)	424, 598, 1123
CfoI	GCGC	1 cut(s)	464
Cfr13I	GGNCC	2 cut(s)	698, 740
CseI	GACGC	2 cut(s)	407, 568
Csp6I	GTAC	4 cut(s)	215, 535, 797, 1152
CviAII	CATG	3 cut(s)	626, 735, 1086
CviQI	GTAC	4 cut(s)	215, 535, 797, 1152
DdeI	CTNAG	2 cut(s)	11, 984
DinI	GGCGCC	1 cut(s)	463
DraI	TTTAAA	1 cut(s)	253
DrdI	GACNNNNNNGTC	1 cut(s)	686
DseDI	GACNNNNNNGTC	1 cut(s)	686
EaeI	YGGCCR	1 cut(s)	745
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
Eco130I	CCWWGG	5 cut(s)	328, 402, 708, 774, 889
Eco24I	GRGCYC	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	2 cut(s)	698, 740
Eco91I	GGTNACC	1 cut(s)	373
EcoNI	CCTNNNNNAGG	1 cut(s)	773
EcoO65I	GGTNACC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	742
EcoT14I	CCWWGG	5 cut(s)	328, 402, 708, 774, 889
EcoT38I	GRGCYC	1 cut(s)	272
EgeI	GGCGCC	1 cut(s)	463
EheI	GGCGCC	1 cut(s)	463
ErhI	CCWWGG	5 cut(s)	328, 402, 708, 774, 889
Esp3I	CGTCTC	1 cut(s)	862
FaeI	CATG	3 cut(s)	629, 738, 1089
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FaqI	GGGAC	2 cut(s)	684, 692
FatI	CATG	3 cut(s)	625, 734, 1085
FauI	CCCGC	1 cut(s)	362
FokI	GGATG	2 cut(s)	608, 733
FriOI	GRGCYC	1 cut(s)	272
FspBI	CTAG	2 cut(s)	329, 770
GlaI	GCGC	1 cut(s)	463
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	333, 747
HapII	CCGG	3 cut(s)	286, 702, 1126
HgaI	GACGC	2 cut(s)	407, 568
HhaI	GCGC	1 cut(s)	464
Hin1I	GRCGYC	3 cut(s)	399, 462, 579
Hin1II	CATG	3 cut(s)	629, 738, 1089
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HindIII	AAGCTT	2 cut(s)	115, 156
HinfI	GANTC	6 cut(s)	146, 324, 363, 501, 1129, 1142
HpaII	CCGG	3 cut(s)	286, 702, 1126
HphI	GGTGA	2 cut(s)	269, 303
Hpy188I	TCNGA	2 cut(s)	323, 1166
Hpy188III	TCNNGA	5 cut(s)	164, 286, 455, 637, 905
HpyAV	CCTTC	2 cut(s)	353, 785
HpyCH4III	ACNGT	2 cut(s)	811, 1183
HpyCH4IV	ACGT	3 cut(s)	871, 909, 1110
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 176, 185, 419, 432, 744, 765, 1073
HpyF3I	CTNAG	2 cut(s)	11, 984
HpySE526I	ACGT	3 cut(s)	871, 909, 1110
Hsp92I	GRCGYC	3 cut(s)	399, 462, 579
Hsp92II	CATG	3 cut(s)	629, 738, 1089
HspAI	GCGC	1 cut(s)	462
KasI	GGCGCC	1 cut(s)	461
Kpn2I	TCCGGA	1 cut(s)	285
LmnI	GCTCC	3 cut(s)	122, 724, 765
LweI	GCATC	2 cut(s)	157, 630
MaeI	CTAG	2 cut(s)	329, 770
MaeII	ACGT	3 cut(s)	871, 909, 1110
MaeIII	GTNAC	4 cut(s)	139, 257, 373, 805
MboII	GAAGA	3 cut(s)	35, 646, 797
MfeI	CAATTG	2 cut(s)	343, 448
MhlI	GDGCHC	4 cut(s)	272, 437, 729, 836
MlsI	TGGCCA	1 cut(s)	747
MluCI	AATT	9 cut(s)	343, 428, 448, 899, 942, 952, 1002, 1061, 1114
MluNI	TGGCCA	1 cut(s)	747
Mly113I	GGCGCC	1 cut(s)	462
MlyI	GAGTC	3 cut(s)	333, 372, 510
MnlI	CCTC	8 cut(s)	199, 219, 454, 499, 673, 781, 843, 1025
Mox20I	TGGCCA	1 cut(s)	747
MroI	TCCGGA	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	747
MseI	TTAA	4 cut(s)	113, 252, 828, 972
Msp20I	TGGCCA	1 cut(s)	747
MspA1I	CMGCKG	2 cut(s)	74, 369
MspCI	CTTAAG	1 cut(s)	112
MspI	CCGG	3 cut(s)	286, 702, 1126
MspR9I	CCNGG	2 cut(s)	702, 744
MunI	CAATTG	2 cut(s)	343, 448
Mva1269I	GAATGC	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	744
MwoI	GCNNNNNNNGC	8 cut(s)	80, 176, 185, 419, 432, 744, 765, 1073
NarI	GGCGCC	1 cut(s)	462
NciI	CCSGG	1 cut(s)	702
NlaIII	CATG	3 cut(s)	629, 738, 1089
NlaIV	GGNNCC	5 cut(s)	463, 700, 706, 767, 835
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	257
PctI	GAATGC	1 cut(s)	35
PfeI	GAWTC	3 cut(s)	146, 1129, 1142
PflFI	GACNNNGTC	1 cut(s)	107
PflMI	CCANNNNNTGG	2 cut(s)	345, 1091
PleI	GAGTC	3 cut(s)	332, 371, 509
PluTI	GGCGCC	1 cut(s)	465
PpsI	GAGTC	3 cut(s)	332, 371, 509
PsiI	TTATAA	1 cut(s)	1204
Psp6I	CCWGG	1 cut(s)	742
PspEI	GGTNACC	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	5 cut(s)	463, 700, 706, 767, 835
PspPI	GGNCC	2 cut(s)	698, 740
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	4 cut(s)	216, 536, 798, 1153
RsaNI	GTAC	4 cut(s)	215, 535, 797, 1152
SaqAI	TTAA	4 cut(s)	113, 252, 828, 972
Sau96I	GGNCC	2 cut(s)	698, 740
SchI	GAGTC	3 cut(s)	333, 372, 510
ScrFI	CCNGG	2 cut(s)	702, 744
SduI	GDGCHC	4 cut(s)	272, 437, 729, 836
SfaNI	GCATC	2 cut(s)	157, 630
SfoI	GGCGCC	1 cut(s)	463
SinI	GGWCC	2 cut(s)	698, 740
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	9 cut(s)	343, 428, 448, 899, 942, 952, 1002, 1061, 1114
SsiI	CCGC	4 cut(s)	72, 93, 369, 738
SspDI	GGCGCC	1 cut(s)	461
SspMI	CTAG	2 cut(s)	329, 770
StyD4I	CCNGG	2 cut(s)	700, 742
StyI	CCWWGG	5 cut(s)	328, 402, 708, 774, 889
TaaI	ACNGT	2 cut(s)	811, 1183
TaiI	ACGT	3 cut(s)	874, 912, 1113
TaqI	TCGA	4 cut(s)	504, 638, 657, 1030
TasI	AATT	9 cut(s)	343, 428, 448, 899, 942, 952, 1002, 1061, 1114
TatI	WGTACW	1 cut(s)	1151
TfiI	GAWTC	3 cut(s)	146, 1129, 1142
Tru1I	TTAA	4 cut(s)	113, 252, 828, 972
Tru9I	TTAA	4 cut(s)	113, 252, 828, 972
TscAI	CASTG	2 cut(s)	1096, 1186
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	28
TspRI	CASTG	2 cut(s)	1096, 1186
Tth111I	GACNNNGTC	1 cut(s)	107
Van91I	CCANNNNNTGG	2 cut(s)	345, 1091
Vha464I	CTTAAG	1 cut(s)	112
VpaK11BI	GGWCC	2 cut(s)	698, 740
XagI	CCTNNNNNAGG	1 cut(s)	773
XapI	RAATTY	2 cut(s)	1061, 1114
XmaJI	CCTAGG	1 cut(s)	328
XspI	CTAG	2 cut(s)	329, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.