Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004005

Physical Location & Seq

Genomic Coordinates Reverse (-)

58730700 .. 58731716

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGGTATTGGGCATTCTGTTGGAAGACCAGGGCCGTTTGGATCCCTTCATCTAAAGCCTTCGGCTTTCGACCCCAGAGAAAAATATTGGACAAGGTTTCCTCCTGAAGGATCCAAATACACTCTACCACACCAATCTTGTGAATTTAAATGGAAGGATTATTGTCCTTTCGTCTTCAGAACTCTTAGGAAGTTGTTCAAGGTGGATGCAGCTGACTACATGCTCTTTATCTGTGGGAACGATGCTCTTCGAGAACTTTCTTCTCCTGGTAAAAGTGAACGGGTTTATGACTGTTTACTTCCTGCATTGCAGCGCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006897 GO:0007164 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010118 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042545 GO:0042995 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090406 GO:0098590 GO:0098657 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

107

Amino Acids

12.23

Weight (kDa)

9.16

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41210 AT3G56960 AT3G56960
fragaria_vesca	FvH4_6g25450
malus_domestica	MD14G1087700.v1.1
prunus_persica	Prupe.1G504300_v2.0.a1 Prupe.3G181700_v2.0.a1 Prupe.7G038800_v2.0.a1 Prupe.8G042800_v2.0.a1
pyrus_communis	pycom1481g00110 pycom14g07780
rosa_chinensis	RchiOBHm_Chr2g0125511 RchiOBHm_Chr3g0486631 RchiOBHm_Chr4g0389821 RchiOBHm_Chr4g0389831 RchiOBHm_Chr7g0202621
rosa_laevigata	RLG00000004364 RLG00000014288 RLG00000018868
rosa_multiflora	Rmu_co8380969.1_g000001 Rmu_sc0001493.1_g000011 Rmu_sc0004504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117950
rosa_rugosa	Rorug02G0257800 Rorug02G0257800
rosa_samantha	Rh2AG316600 Rh2AG506900 Rh2BG324300 Rh2CG306400 Rh2DG342700 Rh5AG307600
rosa_wichuraiana	Rw2G025540 Rw3G020770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	36, 49, 105, 118
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	2 cut(s)	126, 160
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	28, 265
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
AlwI	GGATC	4 cut(s)	36, 49, 105, 118
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	2 cut(s)	209, 310
ApoI	RAATTY	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	32
BamHI	GGATCC	2 cut(s)	41, 110
BbsI	GAAGAC	2 cut(s)	31, 166
BbvI	GCAGC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	2 cut(s)	30, 267
BfoI	RGCGCY	1 cut(s)	316
BisI	GCNGC	2 cut(s)	210, 311
BlsI	GCNGC	2 cut(s)	211, 312
Bme1390I	CCNGG	2 cut(s)	30, 267
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	43, 112
BmrFI	CCNGG	2 cut(s)	30, 267
BmsI	GCATC	2 cut(s)	196, 232
BpiI	GAAGAC	2 cut(s)	31, 166
BsaJI	CCNNGG	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	305
BseBI	CCWGG	2 cut(s)	30, 267
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMI	GCAATG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	221
BshFI	GGCC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	41, 110
BspANI	GGCC	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	43, 112
BspPI	GGATC	4 cut(s)	36, 49, 105, 118
BspQI	GCTCTTC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	2 cut(s)	41, 110
Bst2UI	CCWGG	2 cut(s)	30, 267
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	185
BstENI	CCTNNNNNAGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	211
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	2 cut(s)	44, 113
BstMBI	GATC	2 cut(s)	41, 110
BstNI	CCWGG	2 cut(s)	30, 267
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	28, 265
BstV1I	GCAGC	1 cut(s)	221
BstV2I	GAAGAC	2 cut(s)	31, 166
BstX2I	RGATCY	2 cut(s)	41, 110
BstYI	RGATCY	2 cut(s)	41, 110
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	211
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	32
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	4 cut(s)	34, 58, 65, 212
CviKI_1	RGCY	4 cut(s)	34, 58, 65, 212
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	2 cut(s)	43, 112
DpnII	GATC	2 cut(s)	41, 110
DraI	TTTAAA	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco57I	CTGAAG	2 cut(s)	126, 160
EcoNI	CCTNNNNNAGG	1 cut(s)	105
EcoRII	CCWGG	2 cut(s)	28, 265
FaeI	CATG	1 cut(s)	223
FaiI	YATR	2 cut(s)	221, 288
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	210, 311
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	2 cut(s)	210, 311
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	2 cut(s)	210, 311
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
Hpy166II	GTNNAC	2 cut(s)	278, 296
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	2 cut(s)	104, 251
Hpy8I	GTNNAC	2 cut(s)	278, 296
HpyAV	CCTTC	4 cut(s)	56, 69, 101, 148
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	3 cut(s)	209, 305, 310
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	41, 110
LguI	GCTCTTC	1 cut(s)	252
LpnPI	CCDG	7 cut(s)	15, 42, 88, 117, 252, 279, 315
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	2 cut(s)	196, 232
MalI	GATC	2 cut(s)	43, 112
MboI	GATC	2 cut(s)	41, 110
MboII	GAAGA	4 cut(s)	36, 166, 239, 252
MflI	RGATCY	2 cut(s)	41, 110
MluCI	AATT	1 cut(s)	143
MnlI	CCTC	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	194
MseI	TTAA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	30, 267
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	2 cut(s)	30, 267
NdeII	GATC	2 cut(s)	41, 110
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	2 cut(s)	43, 112
NspI	RCATGY	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	252
PctI	GAATGC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	211, 312
Psp6I	CCWGG	2 cut(s)	28, 265
PspGI	CCWGG	2 cut(s)	28, 265
PspN4I	GGNNCC	2 cut(s)	43, 112
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	41, 110
PvuII	CAGCTG	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	2 cut(s)	210, 311
Sau3AI	GATC	2 cut(s)	41, 110
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	30, 267
SetI	ASST	3 cut(s)	98, 204, 214
SfaNI	GCATC	2 cut(s)	196, 232
SmiI	ATTTAAAT	1 cut(s)	148
Sse9I	AATT	1 cut(s)	143
SspI	AATATT	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	28, 265
SwaI	ATTTAAAT	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	293
TaqI	TCGA	2 cut(s)	69, 250
TasI	AATT	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseI	GCWGC	2 cut(s)	209, 310
TspDTI	ATGAA	1 cut(s)	38
XagI	CCTNNNNNAGG	1 cut(s)	105
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.