Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004005

Physical Location & Seq

Genomic Coordinates Reverse (-)

50701405 .. 50705025

Gene Structure 3621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014288

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGACTGGGAGGGACTCGTGGGGTGGGACCCTTGGTGTCTGTTTGGGAAAACTTGGCGTGCGCTTCTTGCGTCTTCTAGGGGTTACGTTGAAAGGATGGTGGAATGACGTTGGGAGGGGGTGGGGTCCCCACGTGTTGAAATTTCCTTCTTCAGATGATGAACCGAACCCAAGGCATTCTGTTGGAAGACCAGGGCCGTTTGGATCCCTTCATCTAAAGCCTTCGGCTTTCGACCCCAGAGAAAAATATTGGACAAGGTTTCCTCCTGAAGGATCCAAATACACTCTACCACACCAATCTTGTGAATTTAAATGGAAGGATTATTGTCCTTTCGTCTTCAGAACTCTTAGGAAGTTGTTCAAGGTGGATGCAGCTGACTACATGCTCTTTATCTGTGGGAACGATGCTCTTCGAGAACTTTCTTCTCCTGATACCCAATGCCAGAGATGGAAGTTAAACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006897 GO:0007164 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010118 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042545 GO:0042995 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090406 GO:0098590 GO:0098657 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

155

Amino Acids

17.65

Weight (kDa)

9.45

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41210 AT3G56960 AT3G56960
fragaria_vesca	FvH4_6g25450
malus_domestica	MD14G1087700.v1.1
prunus_persica	Prupe.1G504300_v2.0.a1 Prupe.3G181700_v2.0.a1 Prupe.7G038800_v2.0.a1 Prupe.8G042800_v2.0.a1
pyrus_communis	pycom1481g00110 pycom14g07780
rosa_chinensis	RchiOBHm_Chr2g0125511 RchiOBHm_Chr3g0486631 RchiOBHm_Chr4g0389821 RchiOBHm_Chr4g0389831 RchiOBHm_Chr7g0202621
rosa_laevigata	RLG00000004364 RLG00000014288 RLG00000018868
rosa_multiflora	Rmu_co8380969.1_g000001 Rmu_sc0001493.1_g000011 Rmu_sc0004504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117950
rosa_rugosa	Rorug02G0257800 Rorug02G0257800
rosa_samantha	Rh2AG316600 Rh2AG506900 Rh2BG324300 Rh2CG306400 Rh2DG342700 Rh5AG307600
rosa_wichuraiana	Rw2G025540 Rw3G020770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	198, 211, 267, 280
AcsI	RAATTY	2 cut(s)	140, 305
AcuI	CTGAAG	3 cut(s)	135, 288, 322
AcvI	CACGTG	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	3 cut(s)	91, 139, 361
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
AlwI	GGATC	4 cut(s)	198, 211, 267, 280
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	2 cut(s)	140, 305
Asp700I	GAANNNNTTC	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	3 cut(s)	27, 125, 194
AvaII	GGWCC	2 cut(s)	27, 125
BamHI	GGATCC	2 cut(s)	203, 272
BauI	CACGAG	1 cut(s)	16
BbrPI	CACGTG	1 cut(s)	133
BbsI	GAAGAC	3 cut(s)	65, 193, 328
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	2 cut(s)	90, 441
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	192
BfaI	CTAG	1 cut(s)	77
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	2 cut(s)	27, 125
BmgT120I	GGNCC	3 cut(s)	27, 125, 194
BmiI	GGNNCC	6 cut(s)	28, 29, 126, 127, 205, 274
BmrFI	CCNGG	1 cut(s)	192
BmrI	ACTGGG	1 cut(s)	15
BmsI	GCATC	2 cut(s)	358, 394
BmuI	ACTGGG	1 cut(s)	15
BpiI	GAAGAC	3 cut(s)	65, 193, 328
BsaAI	YACGTR	1 cut(s)	133
BsaJI	CCNNGG	3 cut(s)	31, 170, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	3 cut(s)	31, 170, 191
BseGI	GGATG	2 cut(s)	101, 373
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	383
BshFI	GGCC	1 cut(s)	196
BslFI	GGGAC	3 cut(s)	26, 40, 111
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmFI	GGGAC	3 cut(s)	26, 40, 111
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	203, 272
BspANI	GGCC	1 cut(s)	196
BspLI	GGNNCC	6 cut(s)	28, 29, 126, 127, 205, 274
BspPI	GGATC	4 cut(s)	198, 211, 267, 280
BspQI	GCTCTTC	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	3 cut(s)	31, 170, 191
BssMI	GATC	2 cut(s)	203, 272
BssSI	CACGAG	1 cut(s)	16
BssT1I	CCWWGG	2 cut(s)	31, 170
Bst2BI	CACGAG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	414
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	347
BstENI	CCTNNNNNAGG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	101, 373
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	2 cut(s)	206, 275
BstMBI	GATC	2 cut(s)	203, 272
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	383
BstV2I	GAAGAC	3 cut(s)	65, 193, 328
BstX2I	RGATCY	2 cut(s)	203, 272
BstYI	RGATCY	2 cut(s)	203, 272
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	101, 373
Cac8I	GCNNGC	1 cut(s)	59
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	3 cut(s)	27, 125, 194
CseI	GACGC	1 cut(s)	59
CviAII	CATG	1 cut(s)	382
CviJI	RGCY	4 cut(s)	196, 220, 227, 374
CviKI_1	RGCY	4 cut(s)	196, 220, 227, 374
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	2 cut(s)	205, 274
DpnII	GATC	2 cut(s)	203, 272
DraI	TTTAAA	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco130I	CCWWGG	2 cut(s)	31, 170
Eco47I	GGWCC	2 cut(s)	27, 125
Eco57I	CTGAAG	3 cut(s)	135, 288, 322
Eco72I	CACGTG	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	267
EcoO109I	RGGNCCY	2 cut(s)	27, 125
EcoRII	CCWGG	1 cut(s)	190
EcoT14I	CCWWGG	2 cut(s)	31, 170
ErhI	CCWWGG	2 cut(s)	31, 170
FaeI	CATG	1 cut(s)	385
FaiI	YATR	1 cut(s)	383
FaqI	GGGAC	3 cut(s)	26, 40, 111
FatI	CATG	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	2 cut(s)	108, 380
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	196
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	385
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	14
Hpy188I	TCNGA	2 cut(s)	154, 341
Hpy188III	TCNNGA	4 cut(s)	266, 413, 428, 462
HpyAV	CCTTC	5 cut(s)	156, 218, 231, 263, 310
HpyCH4IV	ACGT	3 cut(s)	86, 108, 132
HpyCH4V	TGCA	1 cut(s)	371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	3 cut(s)	86, 108, 132
Hsp92II	CATG	1 cut(s)	385
HspAI	GCGC	1 cut(s)	61
KflI	GGGWCCC	2 cut(s)	27, 125
Kzo9I	GATC	2 cut(s)	203, 272
LguI	GCTCTTC	1 cut(s)	414
LpnPI	CCDG	6 cut(s)	177, 204, 250, 279, 441, 455
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	2 cut(s)	358, 394
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	3 cut(s)	86, 108, 132
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	205, 274
MboI	GATC	2 cut(s)	203, 272
MboII	GAAGA	6 cut(s)	65, 141, 198, 328, 401, 414
MflI	RGATCY	2 cut(s)	203, 272
MluCI	AATT	2 cut(s)	140, 305
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	3 cut(s)	3, 108, 273
MroXI	GAANNNNTTC	1 cut(s)	356
MseI	TTAA	2 cut(s)	309, 455
MspA1I	CMGCKG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	2 cut(s)	203, 272
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	6 cut(s)	28, 29, 126, 127, 205, 274
NspI	RCATGY	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	414
PctI	GAATGC	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	1 cut(s)	8
PmaCI	CACGTG	1 cut(s)	133
PmlI	CACGTG	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	8
Ppu21I	YACGTR	1 cut(s)	133
PpuMI	RGGWCCY	2 cut(s)	27, 125
Psp5II	RGGWCCY	2 cut(s)	27, 125
Psp6I	CCWGG	1 cut(s)	190
PspCI	CACGTG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	6 cut(s)	28, 29, 126, 127, 205, 274
PspPI	GGNCC	3 cut(s)	27, 125, 194
PspPPI	RGGWCCY	2 cut(s)	27, 125
PsuI	RGATCY	2 cut(s)	203, 272
PvuII	CAGCTG	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	309, 455
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	2 cut(s)	203, 272
Sau96I	GGNCC	3 cut(s)	27, 125, 194
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	192
SetI	ASST	6 cut(s)	89, 111, 135, 260, 366, 376
SfaNI	GCATC	2 cut(s)	358, 394
SinI	GGWCC	2 cut(s)	27, 125
SmiI	ATTTAAAT	1 cut(s)	310
Sse9I	AATT	2 cut(s)	140, 305
SspI	AATATT	1 cut(s)	248
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	2 cut(s)	31, 170
SwaI	ATTTAAAT	1 cut(s)	310
TaiI	ACGT	3 cut(s)	89, 111, 135
TaqI	TCGA	2 cut(s)	231, 412
TasI	AATT	2 cut(s)	140, 305
Tru1I	TTAA	2 cut(s)	309, 455
Tru9I	TTAA	2 cut(s)	309, 455
TseI	GCWGC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	174, 200
VpaK11BI	GGWCC	2 cut(s)	27, 125
XagI	CCTNNNNNAGG	1 cut(s)	267
XapI	RAATTY	2 cut(s)	140, 305
XceI	RCATGY	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.