Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8380969.1

Orthogroup ID

OG0004005

Physical Location & Seq

Genomic Coordinates Forward (+)

7 .. 891

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8380969.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgggcaaaggcaggtttagttggccttctggggctacctatgaaggtgagtttaaaagtggttatatggatggcaatggcacatacacaggtgctaatggtgacacatataagggacaatgggttatgaatttgaagcatggccatggtacgaaaaattattccaatggagattggtatgaaggcgaatggcgaagagggttgcaagaaggccatggcaagtaccagtggataaatgggaatcattacattggagaatggaagaatggagagatttatggcaaaggcaccttcgtttggagtaatgggaatagatatgatggaaattgggaagaatgcgtgcctaaaggaaatgggaatttcaaatggcctgatgggagtctttatgtagggaattggagtaaggatccaagtgagcaaaatggtacttattatccttctcaatcatcgtcagatgccaatctcgaatggaatcctcaagatgtatataatattgatttaaaggattgtacgatttgtcccggagagaaagtttcgattttaccatcacagaaaaagctcgcagtgtggaggtcagctaagggcaatggggttaagccgagaaggatgtcagtggatggaagggtaagcgtagggctggagagacctatggataggttgcaaatgtgggatggtggaactggtgatgaccctgcttgtaatgttggtgatagagcttcaactgttggtagagatcaattgaatgatcacgatctcttgggtctaaatgttgaagaaaggggccaaataaaggtgcccagggcaggtaggagacaaggggaaacgatcagtaggggccacaaaaattatgaactcatgcttaatttgcagcttggaattaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006897 GO:0007164 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010118 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042545 GO:0042995 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090406 GO:0098590 GO:0098657 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

294

Amino Acids

33.03

Weight (kDa)

7.65

Isoelectric Point (pI)

25.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41210 AT3G56960 AT3G56960
fragaria_vesca	FvH4_6g25450
malus_domestica	MD14G1087700.v1.1
prunus_persica	Prupe.1G504300_v2.0.a1 Prupe.3G181700_v2.0.a1 Prupe.7G038800_v2.0.a1 Prupe.8G042800_v2.0.a1
pyrus_communis	pycom1481g00110 pycom14g07780
rosa_chinensis	RchiOBHm_Chr2g0125511 RchiOBHm_Chr3g0486631 RchiOBHm_Chr4g0389821 RchiOBHm_Chr4g0389831 RchiOBHm_Chr7g0202621
rosa_laevigata	RLG00000004364 RLG00000014288 RLG00000018868
rosa_multiflora	Rmu_co8380969.1_g000001 Rmu_sc0001493.1_g000011 Rmu_sc0004504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117950
rosa_rugosa	Rorug02G0257800 Rorug02G0257800
rosa_samantha	Rh2AG316600 Rh2AG506900 Rh2BG324300 Rh2CG306400 Rh2DG342700 Rh5AG307600
rosa_wichuraiana	Rw2G025540 Rw3G020770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	3, 794
AccB1I	GGYRCC	2 cut(s)	287, 793
AclWI	GGATC	2 cut(s)	401, 414
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	130, 358
AfaI	GTAC	4 cut(s)	151, 224, 427, 511
AfiI	CCNNNNNNNGG	3 cut(s)	297, 790, 803
AgsI	TTSAA	5 cut(s)	136, 364, 720, 742, 773
AjnI	CCWGG	1 cut(s)	797
AluBI	AGCT	4 cut(s)	559, 578, 716, 871
AluI	AGCT	4 cut(s)	559, 578, 716, 871
Alw26I	GTCTC	2 cut(s)	637, 805
AlwI	GGATC	2 cut(s)	401, 414
AoxI	GGCC	6 cut(s)	23, 142, 211, 368, 781, 835
ApeKI	GCWGC	1 cut(s)	868
ApoI	RAATTY	2 cut(s)	130, 358
AspS9I	GGNCC	2 cut(s)	781, 835
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	4 cut(s)	59, 113, 695, 719
BaeGI	GKGCMC	1 cut(s)	798
BalI	TGGCCA	1 cut(s)	144
BamHI	GGATCC	1 cut(s)	406
BanI	GGYRCC	2 cut(s)	287, 793
BbvI	GCAGC	1 cut(s)	880
BccI	CCATC	6 cut(s)	65, 314, 368, 553, 611, 665
BciT130I	CCWGG	1 cut(s)	799
BclI	TGATCA	1 cut(s)	745
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	2 cut(s)	637, 805
BfuAI	ACCTGC	2 cut(s)	3, 794
BisI	GCNGC	1 cut(s)	869
BlsI	GCNGC	1 cut(s)	870
Bme1390I	CCNGG	2 cut(s)	522, 799
BmgT120I	GGNCC	2 cut(s)	781, 835
BmiI	GGNNCC	5 cut(s)	289, 408, 782, 795, 836
BmrFI	CCNGG	2 cut(s)	522, 799
BmsI	GCATC	1 cut(s)	445
BpmI	CTGGAG	1 cut(s)	659
Bpu10I	CCTNAGC	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	462
BpuMI	CCSGG	1 cut(s)	522
BsaBI	GATNNNNATC	2 cut(s)	459, 750
BsaI	GGTCTC	1 cut(s)	637
BsaJI	CCNNGG	4 cut(s)	145, 214, 797, 798
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	3 cut(s)	297, 790, 803
Bse1I	ACTGG	2 cut(s)	226, 685
Bse3DI	GCAATG	2 cut(s)	82, 592
Bse8I	GATNNNNATC	2 cut(s)	459, 750
BseBI	CCWGG	1 cut(s)	799
BseDI	CCNNGG	4 cut(s)	145, 214, 797, 798
BseGI	GGATG	4 cut(s)	76, 612, 622, 676
BseJI	GATNNNNATC	2 cut(s)	459, 750
BseLI	CCNNNNNNNGG	3 cut(s)	297, 790, 803
BseMI	GCAATG	2 cut(s)	82, 592
BseNI	ACTGG	2 cut(s)	226, 685
BseSI	GKGCMC	1 cut(s)	798
BseXI	GCAGC	1 cut(s)	880
BshFI	GGCC	6 cut(s)	25, 144, 213, 370, 783, 837
BshNI	GGYRCC	2 cut(s)	287, 793
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	2 cut(s)	129, 504
BslI	CCNNNNNNNGG	3 cut(s)	297, 790, 803
BsmAI	GTCTC	2 cut(s)	637, 805
BsmFI	GGGAC	2 cut(s)	129, 504
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	6 cut(s)	25, 144, 213, 370, 783, 837
Bso31I	GGTCTC	1 cut(s)	637
Bsp1286I	GDGCHC	1 cut(s)	798
Bsp143I	GATC	5 cut(s)	406, 733, 745, 751, 825
Bsp19I	CCATGG	2 cut(s)	145, 214
BspANI	GGCC	6 cut(s)	25, 144, 213, 370, 783, 837
BspLI	GGNNCC	5 cut(s)	289, 408, 782, 795, 836
BspMI	ACCTGC	2 cut(s)	3, 794
BspPI	GGATC	2 cut(s)	401, 414
BspT107I	GGYRCC	2 cut(s)	287, 793
BspTNI	GGTCTC	1 cut(s)	637
BsrDI	GCAATG	2 cut(s)	82, 592
BsrI	ACTGG	2 cut(s)	226, 685
BssECI	CCNNGG	4 cut(s)	145, 214, 797, 798
BssMI	GATC	5 cut(s)	406, 733, 745, 751, 825
BssT1I	CCWWGG	2 cut(s)	145, 214
Bst2UI	CCWGG	1 cut(s)	799
Bst4CI	ACNGT	1 cut(s)	724
Bst6I	CTCTTC	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	341, 561
BstDEI	CTNAG	1 cut(s)	579
BstDSI	CCRYGG	2 cut(s)	145, 214
BstF5I	GGATG	4 cut(s)	76, 612, 622, 676
BstKTI	GATC	5 cut(s)	409, 736, 748, 754, 828
BstMAI	GTCTC	2 cut(s)	637, 805
BstMBI	GATC	5 cut(s)	406, 733, 745, 751, 825
BstMWI	GCNNNNNNNGC	1 cut(s)	865
BstNI	CCWGG	1 cut(s)	799
BstSCI	CCNGG	2 cut(s)	520, 797
BstSLI	GKGCMC	1 cut(s)	798
BstV1I	GCAGC	1 cut(s)	880
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	6 cut(s)	25, 144, 213, 370, 783, 837
BtgI	CCRYGG	2 cut(s)	145, 214
BtsCI	GGATG	4 cut(s)	76, 612, 622, 676
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	3 cut(s)	233, 570, 618
BveI	ACCTGC	2 cut(s)	3, 794
Cac8I	GCNNGC	2 cut(s)	341, 561
Cfr13I	GGNCC	2 cut(s)	781, 835
Csp6I	GTAC	4 cut(s)	150, 223, 426, 510
CviAII	CATG	4 cut(s)	140, 146, 215, 856
CviQI	GTAC	4 cut(s)	150, 223, 426, 510
DdeI	CTNAG	1 cut(s)	579
DpnI	GATC	5 cut(s)	408, 735, 747, 753, 827
DpnII	GATC	5 cut(s)	406, 733, 745, 751, 825
DraI	TTTAAA	2 cut(s)	55, 501
EaeI	YGGCCR	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Eco130I	CCWWGG	2 cut(s)	145, 214
Eco31I	GGTCTC	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	797
EcoT14I	CCWWGG	2 cut(s)	145, 214
ErhI	CCWWGG	2 cut(s)	145, 214
FaeI	CATG	4 cut(s)	143, 149, 218, 859
FaqI	GGGAC	2 cut(s)	129, 504
FatI	CATG	4 cut(s)	139, 145, 214, 855
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	1 cut(s)	869
FokI	GGATG	4 cut(s)	83, 619, 629, 683
Fsp4HI	GCNGC	1 cut(s)	869
GluI	GCNGC	1 cut(s)	869
GsuI	CTGGAG	1 cut(s)	659
HaeIII	GGCC	6 cut(s)	25, 144, 213, 370, 783, 837
HapII	CCGG	1 cut(s)	522
Hin1II	CATG	4 cut(s)	143, 149, 218, 859
HinfI	GANTC	3 cut(s)	241, 379, 472
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	4 cut(s)	59, 113, 695, 719
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	3 cut(s)	464, 479, 749
HpyAV	CCTTC	8 cut(s)	36, 38, 176, 203, 301, 447, 597, 615
HpyCH4III	ACNGT	1 cut(s)	724
HpyCH4V	TGCA	3 cut(s)	205, 661, 868
HpyF10VI	GCNNNNNNNGC	1 cut(s)	865
HpyF3I	CTNAG	1 cut(s)	579
Hsp92II	CATG	4 cut(s)	143, 149, 218, 859
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	5 cut(s)	406, 733, 745, 751, 825
Lsp1109I	GCAGC	1 cut(s)	880
LweI	GCATC	1 cut(s)	445
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	5 cut(s)	408, 735, 747, 753, 827
MboI	GATC	5 cut(s)	406, 733, 745, 751, 825
MboII	GAAGA	4 cut(s)	207, 274, 344, 785
MfeI	CAATTG	1 cut(s)	737
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	798
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	9 cut(s)	130, 157, 325, 358, 394, 737, 844, 862, 876
MluNI	TGGCCA	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	388
MnlI	CCTC	3 cut(s)	191, 486, 564
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	4 cut(s)	54, 500, 594, 861
MslI	CAYNNNNRTG	1 cut(s)	144
Msp20I	TGGCCA	1 cut(s)	144
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	2 cut(s)	522, 799
MunI	CAATTG	1 cut(s)	737
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	799
MwoI	GCNNNNNNNGC	1 cut(s)	865
NciI	CCSGG	1 cut(s)	522
NcoI	CCATGG	2 cut(s)	145, 214
NdeII	GATC	5 cut(s)	406, 733, 745, 751, 825
NlaIII	CATG	4 cut(s)	143, 149, 218, 859
NlaIV	GGNNCC	5 cut(s)	289, 408, 782, 795, 836
NmeAIII	GCCGAG	1 cut(s)	624
NmuCI	GTSAC	1 cut(s)	101
PasI	CCCWGGG	1 cut(s)	798
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	2 cut(s)	241, 472
PfoI	TCCNGGA	1 cut(s)	520
PkrI	GCNGC	1 cut(s)	870
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	797
PspGI	CCWGG	1 cut(s)	797
PspN4I	GGNNCC	5 cut(s)	289, 408, 782, 795, 836
PspPI	GGNCC	2 cut(s)	781, 835
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	4 cut(s)	151, 224, 427, 511
RsaNI	GTAC	4 cut(s)	150, 223, 426, 510
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	4 cut(s)	54, 500, 594, 861
SatI	GCNGC	1 cut(s)	869
Sau3AI	GATC	5 cut(s)	406, 733, 745, 751, 825
Sau96I	GGNCC	2 cut(s)	781, 835
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	2 cut(s)	522, 799
SduI	GDGCHC	1 cut(s)	798
SfaNI	GCATC	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
Sse9I	AATT	9 cut(s)	130, 157, 325, 358, 394, 737, 844, 862, 876
SspI	AATATT	1 cut(s)	493
StyD4I	CCNGG	2 cut(s)	520, 797
StyI	CCWWGG	2 cut(s)	145, 214
TaaI	ACNGT	1 cut(s)	724
TaqI	TCGA	2 cut(s)	465, 536
TasI	AATT	9 cut(s)	130, 157, 325, 358, 394, 737, 844, 862, 876
TfiI	GAWTC	2 cut(s)	241, 472
Tru1I	TTAA	4 cut(s)	54, 500, 594, 861
Tru9I	TTAA	4 cut(s)	54, 500, 594, 861
TscAI	CASTG	3 cut(s)	233, 570, 618
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	868
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	4 cut(s)	57, 143, 195, 864
TspRI	CASTG	3 cut(s)	233, 570, 618
XapI	RAATTY	2 cut(s)	130, 358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.