Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004504.1

Orthogroup ID

OG0004005

Physical Location & Seq

Genomic Coordinates Reverse (-)

15982 .. 16908

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004504.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgctctctgcctattacaaccatgttcgagcatacgagaatacgctggtcgctaaattttatggtctacactgcgtaaagctaaccgggcaacctattcaaaaaaaggtgcgatttattattatgggaaatctgttttgttccgaatatagcattcatcgacgttttgacttgaagggatcttcccttggtcgaacaacagataaggctgagacagaaattgatgaaatgaccatacttaaagaccttgatcttaactttatatttcgacttcagaagtcatggtttcaagagttctgcaggcaaattgatagagattgtgagtttcttgaacaggagagaataatggattatagtctcttagttggccttcatttcagaaatacatcagctgctggaaatctgattccttctggagctcttactcctactggtgagaatgagagtgatggaactcccaaactttccagggcagacatggatcaacttcttttagatccatccaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006897 GO:0007164 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010118 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042545 GO:0042995 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090406 GO:0098590 GO:0098657 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

169

Amino Acids

19.48

Weight (kDa)

6.09

Isoelectric Point (pI)

24.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41210 AT3G56960 AT3G56960
fragaria_vesca	FvH4_6g25450
malus_domestica	MD14G1087700.v1.1
prunus_persica	Prupe.1G504300_v2.0.a1 Prupe.3G181700_v2.0.a1 Prupe.7G038800_v2.0.a1 Prupe.8G042800_v2.0.a1
pyrus_communis	pycom1481g00110 pycom14g07780
rosa_chinensis	RchiOBHm_Chr2g0125511 RchiOBHm_Chr3g0486631 RchiOBHm_Chr4g0389821 RchiOBHm_Chr4g0389831 RchiOBHm_Chr7g0202621
rosa_laevigata	RLG00000004364 RLG00000014288 RLG00000018868
rosa_multiflora	Rmu_co8380969.1_g000001 Rmu_sc0001493.1_g000011 Rmu_sc0004504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117950
rosa_rugosa	Rorug02G0257800 Rorug02G0257800
rosa_samantha	Rh2AG316600 Rh2AG506900 Rh2BG324300 Rh2CG306400 Rh2DG342700 Rh5AG307600
rosa_wichuraiana	Rw2G025540 Rw3G020770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	67
AclWI	GGATC	3 cut(s)	187, 489, 491
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	257
AgsI	TTSAA	4 cut(s)	101, 175, 290, 332
AjnI	CCWGG	2 cut(s)	467, 503
AluBI	AGCT	3 cut(s)	82, 392, 419
AluI	AGCT	3 cut(s)	82, 392, 419
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	2 cut(s)	206, 362
AlwI	GGATC	3 cut(s)	187, 489, 491
AlwNI	CAGNNNCTG	1 cut(s)	395
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	56
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	2 cut(s)	443, 508
BciT130I	CCWGG	2 cut(s)	469, 505
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	2 cut(s)	206, 362
BfmI	CTRYAG	1 cut(s)	298
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	3 cut(s)	88, 469, 505
BmrFI	CCNGG	3 cut(s)	88, 469, 505
BpmI	CTGGAG	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	187, 468
Bse1I	ACTGG	1 cut(s)	436
BseBI	CCWGG	2 cut(s)	469, 505
BseDI	CCNNGG	2 cut(s)	187, 468
BseGI	GGATG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	436
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	87
BsmAI	GTCTC	2 cut(s)	206, 362
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	4 cut(s)	179, 250, 481, 496
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	202
BspMAI	CTGCAG	1 cut(s)	302
BspPI	GGATC	3 cut(s)	187, 489, 491
BsrI	ACTGG	1 cut(s)	436
BssECI	CCNNGG	2 cut(s)	187, 468
BssMI	GATC	4 cut(s)	179, 250, 481, 496
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	2 cut(s)	469, 505
BstC8I	GCNNGC	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	210, 361
BstF5I	GGATG	1 cut(s)	500
BstKTI	GATC	4 cut(s)	182, 253, 484, 499
BstMAI	GTCTC	2 cut(s)	206, 362
BstMBI	GATC	4 cut(s)	179, 250, 481, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	2 cut(s)	469, 505
BstSCI	CCNGG	3 cut(s)	86, 467, 503
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	2 cut(s)	179, 496
BstYI	RGATCY	2 cut(s)	179, 496
BsuRI	GGCC	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	500
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	302
CaiI	CAGNNNCTG	1 cut(s)	395
CviAII	CATG	3 cut(s)	23, 282, 478
CviJI	RGCY	5 cut(s)	82, 209, 369, 392, 419
CviKI_1	RGCY	5 cut(s)	82, 209, 369, 392, 419
DdeI	CTNAG	2 cut(s)	210, 361
DpnI	GATC	4 cut(s)	181, 252, 483, 498
DpnII	GATC	4 cut(s)	179, 250, 481, 496
Ecl136II	GAGCTC	1 cut(s)	419
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	421
Eco53kI	GAGCTC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	467, 503
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	3 cut(s)	26, 285, 481
FatI	CATG	3 cut(s)	22, 281, 477
FblI	GTMKAC	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	3 cut(s)	26, 285, 481
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	4 cut(s)	145, 276, 380, 405
Hpy188III	TCNNGA	3 cut(s)	290, 329, 414
Hpy8I	GTNNAC	1 cut(s)	68
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	3 cut(s)	169, 380, 420
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	2 cut(s)	210, 361
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	3 cut(s)	26, 285, 481
Kzo9I	GATC	4 cut(s)	179, 250, 481, 496
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	1 cut(s)	379
MaeII	ACGT	1 cut(s)	163
MalI	GATC	4 cut(s)	181, 252, 483, 498
MboI	GATC	4 cut(s)	179, 250, 481, 496
MboII	GAAGA	1 cut(s)	174
MflI	RGATCY	2 cut(s)	179, 496
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	3 cut(s)	56, 219, 306
MseI	TTAA	2 cut(s)	240, 255
MslI	CAYNNNNRTG	1 cut(s)	505
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	3 cut(s)	88, 469, 505
Mva1269I	GAATGC	1 cut(s)	153
MvaI	CCWGG	2 cut(s)	469, 505
MwoI	GCNNNNNNNGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	88
NdeII	GATC	4 cut(s)	179, 250, 481, 496
NlaIII	CATG	3 cut(s)	26, 285, 481
PctI	GAATGC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	1 cut(s)	394
Psp124BI	GAGCTC	1 cut(s)	421
Psp6I	CCWGG	2 cut(s)	467, 503
PspGI	CCWGG	2 cut(s)	467, 503
PstI	CTGCAG	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	2 cut(s)	179, 496
PvuII	CAGCTG	1 cut(s)	392
RseI	CAYNNNNRTG	1 cut(s)	505
SacI	GAGCTC	1 cut(s)	421
SaqAI	TTAA	2 cut(s)	240, 255
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	4 cut(s)	179, 250, 481, 496
ScrFI	CCNGG	3 cut(s)	88, 469, 505
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	8 cut(s)	84, 97, 111, 166, 249, 394, 421, 509
SfcI	CTRYAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	505
Sse9I	AATT	3 cut(s)	56, 219, 306
SstI	GAGCTC	1 cut(s)	421
StyD4I	CCNGG	3 cut(s)	86, 467, 503
StyI	CCWWGG	1 cut(s)	187
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	4 cut(s)	28, 160, 193, 268
TasI	AATT	3 cut(s)	56, 219, 306
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	2 cut(s)	240, 255
Tru9I	TTAA	2 cut(s)	240, 255
TscAI	CASTG	1 cut(s)	77
TseI	GCWGC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	146, 240, 362
TspRI	CASTG	1 cut(s)	77
XapI	RAATTY	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XmiI	GTMKAC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.