Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004005

Physical Location & Seq

Genomic Coordinates Forward (+)

4847390 .. 4849061

Gene Structure 1672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36293

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGGAAATCTGTTTTGTTCCGAATATACCATTCATCGACGTTTTGACTTGAAGGGATCTTCCCTCGGTCGAACAACAGTTAAGACTGAGACAGAAATTGATGAAACGACCATACTTAAAGACCTAGATCTTAACTTTATATTTCGACTTCAGAAGTCATGGTTTCAAGAAATCTGCAGATTGAGGAGTTGTATTCATTGGACATTATTCTCTGAACAATCTGAGTCTGTGCTTAATCTGGAGGTTGTACATATTGAAGGGGGAGAGGTTTGTATTGGAAACAAGAAAAGAGGAATCCAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006897 GO:0007164 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010118 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042545 GO:0042995 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090406 GO:0098590 GO:0098657 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

101

Amino Acids

11.79

Weight (kDa)

6.82

Isoelectric Point (pI)

63.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	1 - 60	3.4e-16	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41210 AT3G56960 AT3G56960
fragaria_vesca	FvH4_6g25450
malus_domestica	MD14G1087700.v1.1
prunus_persica	Prupe.1G504300_v2.0.a1 Prupe.3G181700_v2.0.a1 Prupe.7G038800_v2.0.a1 Prupe.8G042800_v2.0.a1
pyrus_communis	pycom1481g00110 pycom14g07780
rosa_chinensis	RchiOBHm_Chr2g0125511 RchiOBHm_Chr3g0486631 RchiOBHm_Chr4g0389821 RchiOBHm_Chr4g0389831 RchiOBHm_Chr7g0202621
rosa_laevigata	RLG00000004364 RLG00000014288 RLG00000018868
rosa_multiflora	Rmu_co8380969.1_g000001 Rmu_sc0001493.1_g000011 Rmu_sc0004504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117950
rosa_rugosa	Rorug02G0257800 Rorug02G0257800
rosa_samantha	Rh2AG316600 Rh2AG506900 Rh2BG324300 Rh2CG306400 Rh2DG342700 Rh5AG307600
rosa_wichuraiana	Rw2G025540 Rw3G020770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	1 cut(s)	249
AgsI	TTSAA	3 cut(s)	52, 167, 257
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	125
BfmI	CTRYAG	1 cut(s)	175
BglII	AGATCT	1 cut(s)	127
BpmI	CTGGAG	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	78, 213
BseRI	GAGGAG	1 cut(s)	199
Bsh1285I	CGRYCG	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	83
Bsp1407I	TGTACA	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	56, 127
BspCNI	CTCAG	2 cut(s)	79, 214
BspMAI	CTGCAG	1 cut(s)	179
BspPI	GGATC	1 cut(s)	64
BsrGI	TGTACA	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	2 cut(s)	56, 127
Bst4CI	ACNGT	1 cut(s)	79
BstAUI	TGTACA	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	87, 222
BstKTI	GATC	2 cut(s)	59, 130
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	2 cut(s)	56, 127
BstMCI	CGRYCG	1 cut(s)	70
BstSFI	CTRYAG	1 cut(s)	175
BstX2I	RGATCY	2 cut(s)	56, 127
BstYI	RGATCY	2 cut(s)	56, 127
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	1 cut(s)	159
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	2 cut(s)	87, 222
DpnI	GATC	2 cut(s)	58, 129
DpnII	GATC	2 cut(s)	56, 127
Eco57I	CTGAAG	1 cut(s)	134
FaeI	CATG	1 cut(s)	162
FaiI	YATR	5 cut(s)	27, 113, 140, 160, 252
FatI	CATG	1 cut(s)	158
FspBI	CTAG	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	260
Hin1II	CATG	1 cut(s)	162
HinfI	GANTC	2 cut(s)	224, 294
Hpy188I	TCNGA	4 cut(s)	22, 153, 214, 223
Hpy188III	TCNNGA	2 cut(s)	167, 239
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	2 cut(s)	46, 251
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	177
HpyF3I	CTNAG	2 cut(s)	87, 222
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	56, 127
LpnPI	CCDG	1 cut(s)	224
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	40
MalI	GATC	2 cut(s)	58, 129
MboI	GATC	2 cut(s)	56, 127
MboII	GAAGA	1 cut(s)	51
MflI	RGATCY	2 cut(s)	56, 127
MluCI	AATT	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	5 cut(s)	74, 177, 235, 259, 284
MseI	TTAA	4 cut(s)	81, 117, 132, 234
NdeII	GATC	2 cut(s)	56, 127
NlaIII	CATG	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	294
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PstI	CTGCAG	1 cut(s)	179
PsuI	RGATCY	2 cut(s)	56, 127
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
SaqAI	TTAA	4 cut(s)	81, 117, 132, 234
Sau3AI	GATC	2 cut(s)	56, 127
SchI	GAGTC	1 cut(s)	233
SetI	ASST	4 cut(s)	43, 126, 246, 270
SfcI	CTRYAG	1 cut(s)	175
SgeI	CNNG	7 cut(s)	61, 77, 137, 171, 179, 251, 295
Sse9I	AATT	1 cut(s)	96
SspMI	CTAG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	3 cut(s)	37, 70, 145
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	1 cut(s)	96
TatI	WGTACW	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	294
Tru1I	TTAA	4 cut(s)	81, 117, 132, 234
Tru9I	TTAA	4 cut(s)	81, 117, 132, 234
TspDTI	ATGAA	3 cut(s)	23, 117, 185
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.