G-quadruplex DNA unwinding
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr0c44g0503671 RchiOBHm_Chr2g0141721 RchiOBHm_Chr4g0402131 |
| rosa_roxburghii | Rroxscaffold_1G00044310 Rroxscaffold_7G00168160 |
| rosa_rugosa | Rorug01G0089800 |
| rosa_samantha | Rh1AG107800 Rh2AG238200 Rh2BG532300 Rh5BG224000 Rh5CG334300 Rh5CG338900 Rh6CG231800 Rh6CG232000 Rh7DG420200 |
| rosa_wichuraiana | Rw1G001970 Rw2G022380 Rw5G043560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 154 |
| AciI | CCGC | 1 cut(s) | 395 |
| AclWI | GGATC | 1 cut(s) | 472 |
| AcsI | RAATTY | 2 cut(s) | 139, 231 |
| AcuI | CTGAAG | 1 cut(s) | 363 |
| AfaI | GTAC | 1 cut(s) | 46 |
| AgsI | TTSAA | 2 cut(s) | 236, 564 |
| AluBI | AGCT | 1 cut(s) | 545 |
| AluI | AGCT | 1 cut(s) | 545 |
| Alw26I | GTCTC | 1 cut(s) | 115 |
| AlwI | GGATC | 1 cut(s) | 472 |
| ApoI | RAATTY | 2 cut(s) | 139, 231 |
| AsuHPI | GGTGA | 2 cut(s) | 263, 503 |
| BanI | GGYRCC | 1 cut(s) | 154 |
| BccI | CCATC | 2 cut(s) | 145, 306 |
| BceAI | ACGGC | 1 cut(s) | 16 |
| BclI | TGATCA | 1 cut(s) | 292 |
| BcoDI | GTCTC | 1 cut(s) | 115 |
| BfaI | CTAG | 2 cut(s) | 89, 276 |
| BfmI | CTRYAG | 2 cut(s) | 244, 375 |
| BglII | AGATCT | 1 cut(s) | 85 |
| BmiI | GGNNCC | 1 cut(s) | 156 |
| BmsI | GCATC | 3 cut(s) | 193, 449, 533 |
| BsaAI | YACGTR | 1 cut(s) | 308 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 531, 561 |
| Bse3DI | GCAATG | 1 cut(s) | 526 |
| BseGI | GGATG | 1 cut(s) | 424 |
| BseMI | GCAATG | 1 cut(s) | 526 |
| BseRI | GAGGAG | 1 cut(s) | 189 |
| BshNI | GGYRCC | 1 cut(s) | 154 |
| BsmAI | GTCTC | 1 cut(s) | 115 |
| Bsp1407I | TGTACA | 1 cut(s) | 44 |
| Bsp143I | GATC | 3 cut(s) | 85, 292, 464 |
| BspACI | CCGC | 1 cut(s) | 395 |
| BspHI | TCATGA | 1 cut(s) | 502 |
| BspLI | GGNNCC | 1 cut(s) | 156 |
| BspMAI | CTGCAG | 2 cut(s) | 248, 379 |
| BspPI | GGATC | 1 cut(s) | 472 |
| BspT107I | GGYRCC | 1 cut(s) | 154 |
| BsrDI | GCAATG | 1 cut(s) | 526 |
| BsrGI | TGTACA | 1 cut(s) | 44 |
| BssMI | GATC | 3 cut(s) | 85, 292, 464 |
| Bst4CI | ACNGT | 4 cut(s) | 69, 148, 198, 322 |
| BstAUI | TGTACA | 1 cut(s) | 44 |
| BstBAI | YACGTR | 1 cut(s) | 308 |
| BstC8I | GCNNGC | 2 cut(s) | 101, 458 |
| BstF5I | GGATG | 1 cut(s) | 424 |
| BstKTI | GATC | 3 cut(s) | 88, 295, 467 |
| BstMAI | GTCTC | 1 cut(s) | 115 |
| BstMBI | GATC | 3 cut(s) | 85, 292, 464 |
| BstSFI | CTRYAG | 2 cut(s) | 244, 375 |
| BstX2I | RGATCY | 1 cut(s) | 85 |
| BstYI | RGATCY | 1 cut(s) | 85 |
| BtsCI | GGATG | 1 cut(s) | 424 |
| BtsI | GCAGTG | 2 cut(s) | 253, 372 |
| BtsIMutI | CAGTG | 6 cut(s) | 65, 153, 203, 253, 327, 372 |
| Cac8I | GCNNGC | 2 cut(s) | 101, 458 |
| CciI | TCATGA | 1 cut(s) | 502 |
| Csp6I | GTAC | 1 cut(s) | 45 |
| CviAII | CATG | 1 cut(s) | 503 |
| CviJI | RGCY | 3 cut(s) | 258, 545, 571 |
| CviKI_1 | RGCY | 3 cut(s) | 258, 545, 571 |
| CviQI | GTAC | 1 cut(s) | 45 |
| DpnI | GATC | 3 cut(s) | 87, 294, 466 |
| DpnII | GATC | 3 cut(s) | 85, 292, 464 |
| Eco57I | CTGAAG | 1 cut(s) | 363 |
| EcoT22I | ATGCAT | 1 cut(s) | 526 |
| FaeI | CATG | 1 cut(s) | 506 |
| FaiI | YATR | 7 cut(s) | 167, 399, 401, 445, 480, 504, 584 |
| FatI | CATG | 1 cut(s) | 502 |
| FauNDI | CATATG | 1 cut(s) | 399 |
| FbaI | TGATCA | 1 cut(s) | 292 |
| FokI | GGATG | 1 cut(s) | 411 |
| FspBI | CTAG | 2 cut(s) | 89, 276 |
| Hin1II | CATG | 1 cut(s) | 506 |
| HinfI | GANTC | 3 cut(s) | 220, 240, 485 |
| HphI | GGTGA | 2 cut(s) | 263, 503 |
| Hpy188I | TCNGA | 3 cut(s) | 85, 219, 539 |
| Hpy188III | TCNNGA | 3 cut(s) | 89, 332, 503 |
| HpyAV | CCTTC | 1 cut(s) | 404 |
| HpyCH4III | ACNGT | 4 cut(s) | 69, 148, 198, 322 |
| HpyCH4IV | ACGT | 1 cut(s) | 307 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 246, 266, 377, 519, 524 |
| HpySE526I | ACGT | 1 cut(s) | 307 |
| Hsp92II | CATG | 1 cut(s) | 506 |
| Ksp22I | TGATCA | 1 cut(s) | 292 |
| Kzo9I | GATC | 3 cut(s) | 85, 292, 464 |
| LmnI | GCTCC | 1 cut(s) | 176 |
| LpnPI | CCDG | 3 cut(s) | 281, 345, 422 |
| LweI | GCATC | 3 cut(s) | 193, 449, 533 |
| MaeI | CTAG | 2 cut(s) | 89, 276 |
| MaeII | ACGT | 1 cut(s) | 307 |
| MalI | GATC | 3 cut(s) | 87, 294, 466 |
| MboI | GATC | 3 cut(s) | 85, 292, 464 |
| MboII | GAAGA | 2 cut(s) | 17, 552 |
| MfeI | CAATTG | 1 cut(s) | 468 |
| MflI | RGATCY | 1 cut(s) | 85 |
| MluCI | AATT | 5 cut(s) | 139, 231, 336, 468, 576 |
| MnlI | CCTC | 5 cut(s) | 50, 85, 167, 247, 475 |
| Mph1103I | ATGCAT | 1 cut(s) | 526 |
| MseI | TTAA | 2 cut(s) | 300, 549 |
| MslI | CAYNNNNRTG | 2 cut(s) | 310, 507 |
| MunI | CAATTG | 1 cut(s) | 468 |
| NdeI | CATATG | 1 cut(s) | 399 |
| NdeII | GATC | 3 cut(s) | 85, 292, 464 |
| NlaIII | CATG | 1 cut(s) | 506 |
| NlaIV | GGNNCC | 1 cut(s) | 156 |
| NsiI | ATGCAT | 1 cut(s) | 526 |
| PagI | TCATGA | 1 cut(s) | 502 |
| PfeI | GAWTC | 3 cut(s) | 220, 240, 485 |
| Ppu21I | YACGTR | 1 cut(s) | 308 |
| PspN4I | GGNNCC | 1 cut(s) | 156 |
| PstI | CTGCAG | 2 cut(s) | 248, 379 |
| PsuI | RGATCY | 1 cut(s) | 85 |
| RsaI | GTAC | 1 cut(s) | 46 |
| RsaNI | GTAC | 1 cut(s) | 45 |
| RseI | CAYNNNNRTG | 2 cut(s) | 310, 507 |
| SaqAI | TTAA | 2 cut(s) | 300, 549 |
| Sau3AI | GATC | 3 cut(s) | 85, 292, 464 |
| SetI | ASST | 4 cut(s) | 300, 310, 415, 547 |
| SfaNI | GCATC | 3 cut(s) | 193, 449, 533 |
| SfcI | CTRYAG | 2 cut(s) | 244, 375 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 310, 507 |
| Sse9I | AATT | 5 cut(s) | 139, 231, 336, 468, 576 |
| SsiI | CCGC | 1 cut(s) | 395 |
| SspMI | CTAG | 2 cut(s) | 89, 276 |
| TaaI | ACNGT | 4 cut(s) | 69, 148, 198, 322 |
| TaiI | ACGT | 1 cut(s) | 310 |
| TasI | AATT | 5 cut(s) | 139, 231, 336, 468, 576 |
| TatI | WGTACW | 1 cut(s) | 44 |
| TfiI | GAWTC | 3 cut(s) | 220, 240, 485 |
| Tru1I | TTAA | 2 cut(s) | 300, 549 |
| Tru9I | TTAA | 2 cut(s) | 300, 549 |
| TscAI | CASTG | 6 cut(s) | 72, 153, 203, 253, 327, 379 |
| TspDTI | ATGAA | 2 cut(s) | 491, 519 |
| TspRI | CASTG | 6 cut(s) | 72, 153, 203, 253, 327, 379 |
| XapI | RAATTY | 2 cut(s) | 139, 231 |
| XbaI | TCTAGA | 1 cut(s) | 88 |
| XspI | CTAG | 2 cut(s) | 89, 276 |
| Zsp2I | ATGCAT | 1 cut(s) | 526 |