Rw5G043560

Belongs to the peptidase M24B family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0013744
Physical Location & Seq
Forward (+)
76420834 .. 76421962
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G043560.1

Sequence Viewer

Length: 363 bp
ATGGCACCAAAAACTATAATGAGAGGAGCAAAAAGATTGTTAGAAGAGTGTGATGATGGAAATCGTGACAATGAACAAAAATTCAACAAATTTCGTATGCTGAAGATTTGTTACAAGAAGAACTACAGTCTCGGAGTACCTATAACTATTGAATGGCTGAATGATGTTTTGGCCCCTGGTGGGAGAGTTGGCATTGACCCTAGAGGAAGTGACGTTCCACATTCACCTGTTATGTATGCACATCTGATTGTGGAGATCGACAAAACAAAGTTATATGTAGATACTTCCAAAGTAGGCATGAGGTGTAGGATCACCTGGCAAATGCAAGTTTCAGGCCATATGATTCCATTCTTTCTGAAGTAG

Protein Analysis

120

Amino Acids

13.8

Weight (kDa)

9.38

Isoelectric Point (pI)

30.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Creatinase_N_2 PF16189 68 - 100 1.5e-07 Creatinase/Prolidase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AclWI GGATC 1 cut(s) 317
AcsI RAATTY 2 cut(s) 80, 89
AcuI CTGAAG 1 cut(s) 122
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 2 cut(s) 85, 152
AjnI CCWGG 2 cut(s) 175, 314
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AloI GAACNNNNNNTCC 2 cut(s) 198, 230
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 317
AoxI GGCC 2 cut(s) 171, 334
ApoI RAATTY 2 cut(s) 80, 89
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 216, 304
BanI GGYRCC 1 cut(s) 4
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BccI CCATC 1 cut(s) 50
BciT130I CCWGG 2 cut(s) 177, 316
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 124
Bme1390I CCNGG 2 cut(s) 177, 316
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 2 cut(s) 6, 174
BmrFI CCNGG 2 cut(s) 177, 316
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 2 cut(s) 177, 316
BseDI CCNNGG 1 cut(s) 175
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 39
BshFI GGCC 2 cut(s) 173, 336
BshNI GGYRCC 1 cut(s) 4
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 2 cut(s) 173, 336
Bsp143I GATC 2 cut(s) 255, 309
BspANI GGCC 2 cut(s) 173, 336
BspLI GGNNCC 2 cut(s) 6, 174
BspPI GGATC 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 2 cut(s) 255, 309
Bst2UI CCWGG 2 cut(s) 177, 316
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 39
BstKTI GATC 2 cut(s) 258, 312
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 255, 309
BstNI CCWGG 2 cut(s) 177, 316
BstSCI CCNGG 2 cut(s) 175, 314
BstSFI CTRYAG 1 cut(s) 124
BsuRI GGCC 2 cut(s) 173, 336
Cfr13I GGNCC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 137
CviAII CATG 1 cut(s) 298
CviJI RGCY 3 cut(s) 157, 173, 336
CviKI_1 RGCY 3 cut(s) 157, 173, 336
CviQI GTAC 1 cut(s) 137
DpnI GATC 2 cut(s) 257, 311
DpnII GATC 2 cut(s) 255, 309
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 175, 314
FaeI CATG 1 cut(s) 301
FatI CATG 1 cut(s) 297
FauNDI CATATG 1 cut(s) 339
FspBI CTAG 1 cut(s) 201
HaeIII GGCC 2 cut(s) 173, 336
Hin1II CATG 1 cut(s) 301
HinfI GANTC 1 cut(s) 343
HphI GGTGA 2 cut(s) 216, 304
Hpy188I TCNGA 3 cut(s) 134, 246, 357
Hpy188III TCNNGA 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 2 cut(s) 239, 325
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 1 cut(s) 301
Kzo9I GATC 2 cut(s) 255, 309
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 6 cut(s) 162, 189, 240, 301, 318, 328
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 3 cut(s) 65, 110, 209
MalI GATC 2 cut(s) 257, 311
MboI GATC 2 cut(s) 255, 309
MboII GAAGA 3 cut(s) 56, 115, 130
MluCI AATT 2 cut(s) 80, 89
MnlI CCTC 3 cut(s) 17, 197, 294
MspR9I CCNGG 2 cut(s) 177, 316
MvaI CCWGG 2 cut(s) 177, 316
NdeI CATATG 1 cut(s) 339
NdeII GATC 2 cut(s) 255, 309
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 2 cut(s) 6, 174
NmuCI GTSAC 2 cut(s) 65, 209
PfeI GAWTC 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 175, 314
PspGI CCWGG 2 cut(s) 175, 314
PspN4I GGNNCC 2 cut(s) 6, 174
PspPI GGNCC 1 cut(s) 172
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
Sau3AI GATC 2 cut(s) 255, 309
Sau96I GGNCC 1 cut(s) 172
ScrFI CCNGG 2 cut(s) 177, 316
SetI ASST 5 cut(s) 142, 216, 229, 305, 317
SfcI CTRYAG 1 cut(s) 124
Sse9I AATT 2 cut(s) 80, 89
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 175, 314
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 258
TasI AATT 2 cut(s) 80, 89
TfiI GAWTC 1 cut(s) 343
TseFI GTSAC 2 cut(s) 65, 209
Tsp45I GTSAC 2 cut(s) 65, 209
TspDTI ATGAA 1 cut(s) 87
XapI RAATTY 2 cut(s) 80, 89
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.