Rh6CG232000

Belongs to the peptidase M24B family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013744
Physical Location & Seq
Reverse (-)
39151505 .. 39161271
9767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG232000.1

Sequence Viewer

Length: 336 bp
ATGTCAACAACCCCAATCGACTACAACGATCTCGAGTTCACCTATCTCTTCAAGGCTGAAAAGCAGATGAGCTCTAGTTGGATTCTCATGCGAGTTGGTAGTCTCGGAGTACCTACAACTATTGAATGGCTGAATGATGTTTTGGCCCCTGGTGGGAGAGTTGGCATTGACCCTAGAGGAAGTGACGTTCCACATTCACCTGTTATGTATGCACATCTGATTGTGGAGATCGACAAAACAAAGTTATATGTAGATACTTCCAAACTAGGCATGAGGTGTAGGATCACCTGGCGAATGCGGGTTTCAGGCCATATGACTCCATTCTTTCTGAAGTAG

Protein Analysis

111

Amino Acids

12.65

Weight (kDa)

8.82

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Creatinase_N_2 PF16189 59 - 90 1.5e-07 Creatinase/Prolidase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 298
AclWI GGATC 1 cut(s) 290
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 2 cut(s) 52, 125
AjnI CCWGG 2 cut(s) 148, 287
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 290
Ama87I CYCGRG 1 cut(s) 32
AoxI GGCC 2 cut(s) 144, 307
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 3 cut(s) 31, 189, 277
AvaI CYCGRG 1 cut(s) 32
BanII GRGCYC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 150, 289
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 3 cut(s) 75, 174, 266
Bme1390I CCNGG 2 cut(s) 150, 289
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 150, 289
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 153
BseBI CCWGG 2 cut(s) 150, 289
BseDI CCNNGG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 153
BshFI GGCC 2 cut(s) 146, 309
BsiHKAI GWGCWC 1 cut(s) 74
BsiHKCI CYCGRG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 107
BsmI GAATGC 1 cut(s) 300
BsnI GGCC 2 cut(s) 146, 309
BsoBI CYCGRG 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 3 cut(s) 28, 228, 282
BspACI CCGC 1 cut(s) 298
BspANI GGCC 2 cut(s) 146, 309
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 3 cut(s) 28, 228, 282
Bst2UI CCWGG 2 cut(s) 150, 289
Bst6I CTCTTC 1 cut(s) 53
BstKTI GATC 3 cut(s) 31, 231, 285
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 3 cut(s) 28, 228, 282
BstNI CCWGG 2 cut(s) 150, 289
BstSCI CCNGG 2 cut(s) 148, 287
BsuRI GGCC 2 cut(s) 146, 309
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 110
CviAII CATG 2 cut(s) 88, 271
CviJI RGCY 5 cut(s) 56, 72, 130, 146, 309
CviKI_1 RGCY 5 cut(s) 56, 72, 130, 146, 309
CviQI GTAC 1 cut(s) 110
DpnI GATC 3 cut(s) 30, 230, 284
DpnII GATC 3 cut(s) 28, 228, 282
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 74
Eco53kI GAGCTC 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 148, 287
EcoT38I GRGCYC 1 cut(s) 74
FaeI CATG 2 cut(s) 91, 274
FaiI YATR 8 cut(s) 89, 206, 210, 247, 249, 272, 312, 314
FatI CATG 2 cut(s) 87, 270
FauI CCCGC 1 cut(s) 291
FauNDI CATATG 1 cut(s) 312
FriOI GRGCYC 1 cut(s) 74
FspBI CTAG 3 cut(s) 75, 174, 266
HaeIII GGCC 2 cut(s) 146, 309
Hin1II CATG 2 cut(s) 91, 274
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 82, 316
HphI GGTGA 3 cut(s) 31, 189, 277
Hpy166II GTNNAC 2 cut(s) 6, 39
Hpy188I TCNGA 3 cut(s) 107, 219, 330
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 2 cut(s) 6, 39
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 212
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 2 cut(s) 91, 274
Kzo9I GATC 3 cut(s) 28, 228, 282
LpnPI CCDG 6 cut(s) 135, 162, 213, 274, 291, 301
MaeI CTAG 3 cut(s) 75, 174, 266
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 182
MalI GATC 3 cut(s) 30, 230, 284
MboI GATC 3 cut(s) 28, 228, 282
MboII GAAGA 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 74
MlyI GAGTC 1 cut(s) 310
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 2 cut(s) 170, 267
MspR9I CCNGG 2 cut(s) 150, 289
Mva1269I GAATGC 1 cut(s) 300
MvaI CCWGG 2 cut(s) 150, 289
NdeI CATATG 1 cut(s) 312
NdeII GATC 3 cut(s) 28, 228, 282
NlaIII CATG 2 cut(s) 91, 274
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 182
PaeR7I CTCGAG 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PctI GAATGC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 82
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 74
Psp6I CCWGG 2 cut(s) 148, 287
PspGI CCWGG 2 cut(s) 148, 287
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 145
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SacI GAGCTC 1 cut(s) 74
Sau3AI GATC 3 cut(s) 28, 228, 282
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 2 cut(s) 150, 289
SduI GDGCHC 1 cut(s) 74
SetI ASST 7 cut(s) 44, 74, 115, 189, 202, 278, 290
Sfr274I CTCGAG 1 cut(s) 32
SlaI CTCGAG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SsiI CCGC 1 cut(s) 298
SspMI CTAG 3 cut(s) 75, 174, 266
SstI GAGCTC 1 cut(s) 74
StyD4I CCNGG 2 cut(s) 148, 287
TaiI ACGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 18, 33, 231
TfiI GAWTC 1 cut(s) 82
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
XhoI CTCGAG 1 cut(s) 32
XspI CTAG 3 cut(s) 75, 174, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.