No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr0c44g0503671 RchiOBHm_Chr2g0141721 RchiOBHm_Chr4g0402131 |
| rosa_roxburghii | Rroxscaffold_1G00044310 Rroxscaffold_7G00168160 |
| rosa_rugosa | Rorug01G0089800 |
| rosa_samantha | Rh1AG107800 Rh2AG238200 Rh2BG532300 Rh5BG224000 Rh5CG334300 Rh5CG338900 Rh6CG231800 Rh6CG232000 Rh7DG420200 |
| rosa_wichuraiana | Rw1G001970 Rw2G022380 Rw5G043560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 61, 97, 284 |
| AclWI | GGATC | 1 cut(s) | 117 |
| AcoI | YGGCCR | 1 cut(s) | 62 |
| AcuI | CTGAAG | 1 cut(s) | 252 |
| AgsI | TTSAA | 1 cut(s) | 313 |
| AleI | CACNNNNGTG | 1 cut(s) | 353 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 126, 158 |
| AluBI | AGCT | 3 cut(s) | 72, 170, 302 |
| AluI | AGCT | 3 cut(s) | 72, 170, 302 |
| AlwI | GGATC | 1 cut(s) | 117 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 112 |
| AoxI | GGCC | 1 cut(s) | 62 |
| AsuHPI | GGTGA | 1 cut(s) | 314 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 41, 74 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 146, 178 |
| BccI | CCATC | 1 cut(s) | 73 |
| BfaI | CTAG | 1 cut(s) | 192 |
| BisI | GCNGC | 1 cut(s) | 62 |
| BlsI | GCNGC | 1 cut(s) | 63 |
| BmsI | GCATC | 1 cut(s) | 108 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 26, 58 |
| BsaAI | YACGTR | 1 cut(s) | 121 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 126, 156 |
| BseMII | CTCAG | 2 cut(s) | 36, 104 |
| Bsh1285I | CGRYCG | 1 cut(s) | 97 |
| BshFI | GGCC | 1 cut(s) | 64 |
| BsiEI | CGRYCG | 1 cut(s) | 97 |
| BsnI | GGCC | 1 cut(s) | 64 |
| Bsp143I | GATC | 1 cut(s) | 109 |
| BspACI | CCGC | 3 cut(s) | 61, 97, 284 |
| BspANI | GGCC | 1 cut(s) | 64 |
| BspCNI | CTCAG | 2 cut(s) | 37, 105 |
| BspPI | GGATC | 1 cut(s) | 117 |
| BssMI | GATC | 1 cut(s) | 109 |
| Bst4CI | ACNGT | 1 cut(s) | 7 |
| BstBAI | YACGTR | 1 cut(s) | 121 |
| BstC8I | GCNNGC | 2 cut(s) | 204, 334 |
| BstDEI | CTNAG | 2 cut(s) | 45, 113 |
| BstEII | GGTNACC | 1 cut(s) | 320 |
| BstKTI | GATC | 1 cut(s) | 112 |
| BstMBI | GATC | 1 cut(s) | 109 |
| BstMCI | CGRYCG | 1 cut(s) | 97 |
| BstPI | GGTNACC | 1 cut(s) | 320 |
| BstSNI | TACGTA | 1 cut(s) | 121 |
| BstX2I | RGATCY | 1 cut(s) | 109 |
| BstYI | RGATCY | 1 cut(s) | 109 |
| BsuRI | GGCC | 1 cut(s) | 64 |
| BtsI | GCAGTG | 1 cut(s) | 261 |
| BtsIMutI | CAGTG | 1 cut(s) | 261 |
| Cac8I | GCNNGC | 2 cut(s) | 204, 334 |
| CaiI | CAGNNNCTG | 1 cut(s) | 112 |
| CviAII | CATG | 1 cut(s) | 211 |
| CviJI | RGCY | 6 cut(s) | 42, 64, 72, 170, 302, 336 |
| CviKI_1 | RGCY | 6 cut(s) | 42, 64, 72, 170, 302, 336 |
| DdeI | CTNAG | 2 cut(s) | 45, 113 |
| DpnI | GATC | 1 cut(s) | 111 |
| DpnII | GATC | 1 cut(s) | 109 |
| EaeI | YGGCCR | 1 cut(s) | 62 |
| Eco105I | TACGTA | 1 cut(s) | 121 |
| Eco57I | CTGAAG | 1 cut(s) | 252 |
| Eco91I | GGTNACC | 1 cut(s) | 320 |
| EcoO65I | GGTNACC | 1 cut(s) | 320 |
| FaeI | CATG | 1 cut(s) | 214 |
| FaiI | YATR | 4 cut(s) | 147, 212, 288, 290 |
| FatI | CATG | 1 cut(s) | 210 |
| FauNDI | CATATG | 1 cut(s) | 288 |
| Fnu4HI | GCNGC | 1 cut(s) | 62 |
| Fsp4HI | GCNGC | 1 cut(s) | 62 |
| FspBI | CTAG | 1 cut(s) | 192 |
| GluI | GCNGC | 1 cut(s) | 62 |
| HaeIII | GGCC | 1 cut(s) | 64 |
| Hin1II | CATG | 1 cut(s) | 214 |
| HphI | GGTGA | 1 cut(s) | 314 |
| Hpy188I | TCNGA | 4 cut(s) | 46, 78, 114, 174 |
| Hpy188III | TCNNGA | 3 cut(s) | 107, 192, 221 |
| HpyAV | CCTTC | 2 cut(s) | 307, 311 |
| HpyCH4III | ACNGT | 1 cut(s) | 7 |
| HpyCH4IV | ACGT | 1 cut(s) | 120 |
| HpyCH4V | TGCA | 2 cut(s) | 266, 332 |
| HpyF3I | CTNAG | 2 cut(s) | 45, 113 |
| HpySE526I | ACGT | 1 cut(s) | 120 |
| Hsp92II | CATG | 1 cut(s) | 214 |
| Kzo9I | GATC | 1 cut(s) | 109 |
| LmnI | GCTCC | 1 cut(s) | 175 |
| LpnPI | CCDG | 5 cut(s) | 38, 92, 168, 234, 318 |
| LweI | GCATC | 1 cut(s) | 108 |
| MaeI | CTAG | 1 cut(s) | 192 |
| MaeII | ACGT | 1 cut(s) | 120 |
| MaeIII | GTNAC | 1 cut(s) | 320 |
| MalI | GATC | 1 cut(s) | 111 |
| MboI | GATC | 1 cut(s) | 109 |
| MboII | GAAGA | 1 cut(s) | 31 |
| MfeI | CAATTG | 1 cut(s) | 267 |
| MflI | RGATCY | 1 cut(s) | 109 |
| MluCI | AATT | 2 cut(s) | 225, 267 |
| MnlI | CCTC | 4 cut(s) | 32, 130, 188, 363 |
| MslI | CAYNNNNRTG | 1 cut(s) | 353 |
| MunI | CAATTG | 1 cut(s) | 267 |
| NdeI | CATATG | 1 cut(s) | 288 |
| NdeII | GATC | 1 cut(s) | 109 |
| NlaIII | CATG | 1 cut(s) | 214 |
| NmuCI | GTSAC | 1 cut(s) | 320 |
| OliI | CACNNNNGTG | 1 cut(s) | 353 |
| PkrI | GCNGC | 1 cut(s) | 63 |
| Ppu21I | YACGTR | 1 cut(s) | 121 |
| PspEI | GGTNACC | 1 cut(s) | 320 |
| PstNI | CAGNNNCTG | 1 cut(s) | 112 |
| PsuI | RGATCY | 1 cut(s) | 109 |
| RseI | CAYNNNNRTG | 1 cut(s) | 353 |
| SatI | GCNGC | 1 cut(s) | 62 |
| Sau3AI | GATC | 1 cut(s) | 109 |
| SetI | ASST | 6 cut(s) | 74, 123, 172, 304, 322, 374 |
| SfaNI | GCATC | 1 cut(s) | 108 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 353 |
| SnaBI | TACGTA | 1 cut(s) | 121 |
| Sse9I | AATT | 2 cut(s) | 225, 267 |
| SsiI | CCGC | 3 cut(s) | 61, 97, 284 |
| SspMI | CTAG | 1 cut(s) | 192 |
| TaaI | ACNGT | 1 cut(s) | 7 |
| TaiI | ACGT | 1 cut(s) | 123 |
| TaqI | TCGA | 1 cut(s) | 93 |
| TasI | AATT | 2 cut(s) | 225, 267 |
| TauI | GCSGC | 1 cut(s) | 64 |
| TscAI | CASTG | 1 cut(s) | 268 |
| TseFI | GTSAC | 1 cut(s) | 320 |
| Tsp45I | GTSAC | 1 cut(s) | 320 |
| TspDTI | ATGAA | 1 cut(s) | 134 |
| TspRI | CASTG | 1 cut(s) | 268 |
| XbaI | TCTAGA | 1 cut(s) | 191 |
| XspI | CTAG | 1 cut(s) | 192 |