Rh5CG338900

Belongs to the peptidase M24B family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0013744
Physical Location & Seq
Reverse (-)
38771283 .. 38772887
1605 bp
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UTR
Exon/CDS
Intron
Rh5CG338900.1

Sequence Viewer

Length: 543 bp
ATGGCACCAAAAACTATAATGAGAGGAGCAAAAAGATTGTTAGAAGAGTGTGATGATGGAAATCGTGACAATGAACAAAAAATTCAACAAATTTCGTATGGTGAAGATTTTGTTACAAGAAGAACTACATGTAACCGTGTTGATCAGATTATATCTTGTAGATGGAAAAGAGTATCTCATCCAGAAACTGCTGAAGCATCAGAGAGTAACAGCCAAGATATCATTGCAGCTCCAAATGAAAATGCACATATGATTACAGAAGCTGAAAAGCAGCTGAGCGCTAGTTGGATTCTCATGCGAGCTGGTACTCTTGGAGTACCTATAACTATTGAATGGCTGAATGATGTTTTGGCCCCTGGTGGGAGAGTTGGCGCTGACCCTAGAGGAAGTGACGTTCCACATTCACCTGTTATGTATGCACATCTGATTGTGGAGATCAACAAAACAAAGTTATATGTAGATACTTCCAAAGTAGGCATGAGGTGTAGGATCACCTGGCGAATGCGGGTTTCAGGCCATATGACTCCATTCTTTCTGAAGTAG

Protein Analysis

180

Amino Acids

20.31

Weight (kDa)

8.38

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Creatinase_N_2 PF16189 128 - 159 6.4e-07 Creatinase/Prolidase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 505
AclWI GGATC 1 cut(s) 497
AcsI RAATTY 2 cut(s) 81, 90
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 2 cut(s) 307, 318
AfeI AGCGCT 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 360
AflIII ACRYGT 1 cut(s) 128
AgsI TTSAA 2 cut(s) 86, 332
AjnI CCWGG 2 cut(s) 355, 494
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AloI GAACNNNNNNTCC 2 cut(s) 378, 410
AluBI AGCT 4 cut(s) 230, 263, 274, 302
AluI AGCT 4 cut(s) 230, 263, 274, 302
AlwI GGATC 1 cut(s) 497
AlwNI CAGNNNCTG 2 cut(s) 188, 263
Aor51HI AGCGCT 1 cut(s) 280
AoxI GGCC 2 cut(s) 351, 514
ApeKI GCWGC 2 cut(s) 227, 271
ApoI RAATTY 2 cut(s) 81, 90
AspLEI GCGC 2 cut(s) 281, 374
AspS9I GGNCC 1 cut(s) 352
AsuHPI GGTGA 3 cut(s) 113, 396, 484
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 239, 283
BccI CCATC 2 cut(s) 50, 156
BciT130I CCWGG 2 cut(s) 357, 496
BclI TGATCA 1 cut(s) 142
BfaI CTAG 2 cut(s) 282, 381
BfoI RGCGCY 2 cut(s) 282, 375
BisI GCNGC 2 cut(s) 228, 272
BlpI GCTNAGC 1 cut(s) 275
BlsI GCNGC 2 cut(s) 229, 273
Bme1390I CCNGG 2 cut(s) 357, 496
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 6, 354
BmrFI CCNGG 2 cut(s) 357, 496
BmsI GCATC 1 cut(s) 206
Bpu1102I GCTNAGC 1 cut(s) 275
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse3DI GCAATG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 2 cut(s) 357, 496
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 178
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 239, 283
BshFI GGCC 2 cut(s) 353, 516
BshNI GGYRCC 1 cut(s) 4
BslI CCNNNNNNNGG 1 cut(s) 360
BsmI GAATGC 1 cut(s) 507
BsnI GGCC 2 cut(s) 353, 516
Bsp143I GATC 3 cut(s) 142, 435, 489
Bsp1720I GCTNAGC 1 cut(s) 275
BspACI CCGC 1 cut(s) 505
BspANI GGCC 2 cut(s) 353, 516
BspCNI CTCAG 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 6, 354
BspPI GGATC 1 cut(s) 497
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 3 cut(s) 142, 435, 489
Bst2UI CCWGG 2 cut(s) 357, 496
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 275
BstF5I GGATG 1 cut(s) 178
BstH2I RGCGCY 2 cut(s) 282, 375
BstHHI GCGC 2 cut(s) 281, 374
BstKTI GATC 3 cut(s) 145, 438, 492
BstMBI GATC 3 cut(s) 142, 435, 489
BstNI CCWGG 2 cut(s) 357, 496
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 355, 494
BstV1I GCAGC 2 cut(s) 239, 283
BsuRI GGCC 2 cut(s) 353, 516
BtsCI GGATG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 300
CaiI CAGNNNCTG 2 cut(s) 188, 263
CfoI GCGC 2 cut(s) 281, 374
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 306, 317
CviAII CATG 3 cut(s) 129, 295, 478
CviJI RGCY 8 cut(s) 213, 230, 263, 274, 302, 337, 353, 516
CviKI_1 RGCY 8 cut(s) 213, 230, 263, 274, 302, 337, 353, 516
CviQI GTAC 2 cut(s) 306, 317
DdeI CTNAG 1 cut(s) 275
DpnI GATC 3 cut(s) 144, 437, 491
DpnII GATC 3 cut(s) 142, 435, 489
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco32I GATATC 1 cut(s) 220
Eco47III AGCGCT 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 213
EcoRII CCWGG 2 cut(s) 355, 494
EcoRV GATATC 1 cut(s) 220
FaeI CATG 3 cut(s) 132, 298, 481
FatI CATG 3 cut(s) 128, 294, 477
FauI CCCGC 1 cut(s) 498
FauNDI CATATG 2 cut(s) 249, 519
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 2 cut(s) 228, 272
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 2 cut(s) 228, 272
FspBI CTAG 2 cut(s) 282, 381
GlaI GCGC 2 cut(s) 280, 373
GluI GCNGC 2 cut(s) 228, 272
HaeII RGCGCY 2 cut(s) 282, 375
HaeIII GGCC 2 cut(s) 353, 516
HhaI GCGC 2 cut(s) 281, 374
Hin1II CATG 3 cut(s) 132, 298, 481
Hin6I GCGC 2 cut(s) 279, 372
HinP1I GCGC 2 cut(s) 279, 372
HinfI GANTC 2 cut(s) 289, 523
HphI GGTGA 3 cut(s) 113, 396, 484
Hpy188I TCNGA 4 cut(s) 147, 202, 426, 537
Hpy188III TCNNGA 2 cut(s) 65, 182
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 3 cut(s) 227, 245, 419
HpyF3I CTNAG 1 cut(s) 275
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 3 cut(s) 132, 298, 481
HspAI GCGC 2 cut(s) 279, 372
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 3 cut(s) 142, 435, 489
LmnI GCTCC 2 cut(s) 26, 235
LpnPI CCDG 8 cut(s) 195, 288, 342, 369, 420, 481, 498, 508
Lsp1109I GCAGC 2 cut(s) 239, 283
LweI GCATC 1 cut(s) 206
MaeI CTAG 2 cut(s) 282, 381
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 5 cut(s) 65, 112, 131, 206, 389
MalI GATC 3 cut(s) 144, 437, 491
MboI GATC 3 cut(s) 142, 435, 489
MboII GAAGA 3 cut(s) 56, 116, 132
MluCI AATT 2 cut(s) 81, 90
MlyI GAGTC 1 cut(s) 517
MmeI TCCRAC 1 cut(s) 266
MnlI CCTC 3 cut(s) 17, 377, 474
MspA1I CMGCKG 1 cut(s) 274
MspR9I CCNGG 2 cut(s) 357, 496
Mva1269I GAATGC 1 cut(s) 507
MvaI CCWGG 2 cut(s) 357, 496
NdeI CATATG 2 cut(s) 249, 519
NdeII GATC 3 cut(s) 142, 435, 489
NlaIII CATG 3 cut(s) 132, 298, 481
NlaIV GGNNCC 2 cut(s) 6, 354
NmuCI GTSAC 2 cut(s) 65, 389
NspI RCATGY 1 cut(s) 132
PciI ACATGT 1 cut(s) 128
PctI GAATGC 1 cut(s) 507
PfeI GAWTC 1 cut(s) 289
PkrI GCNGC 2 cut(s) 229, 273
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
PscI ACATGT 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 355, 494
PspGI CCWGG 2 cut(s) 355, 494
PspN4I GGNNCC 2 cut(s) 6, 354
PspPI GGNCC 1 cut(s) 352
PstNI CAGNNNCTG 2 cut(s) 188, 263
PvuII CAGCTG 1 cut(s) 274
RsaI GTAC 2 cut(s) 307, 318
RsaNI GTAC 2 cut(s) 306, 317
SatI GCNGC 2 cut(s) 228, 272
Sau3AI GATC 3 cut(s) 142, 435, 489
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 1 cut(s) 517
ScrFI CCNGG 2 cut(s) 357, 496
SetI ASST 9 cut(s) 232, 265, 276, 304, 322, 396, 409, 485, 497
SfaNI GCATC 1 cut(s) 206
Sse9I AATT 2 cut(s) 81, 90
SsiI CCGC 1 cut(s) 505
SspMI CTAG 2 cut(s) 282, 381
StyD4I CCNGG 2 cut(s) 355, 494
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 396
TasI AATT 2 cut(s) 81, 90
TfiI GAWTC 1 cut(s) 289
TseFI GTSAC 2 cut(s) 65, 389
TseI GCWGC 2 cut(s) 227, 271
Tsp45I GTSAC 2 cut(s) 65, 389
TspDTI ATGAA 2 cut(s) 87, 252
XapI RAATTY 2 cut(s) 81, 90
XceI RCATGY 1 cut(s) 132
XspI CTAG 2 cut(s) 282, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.