Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013744

Physical Location & Seq

Genomic Coordinates Forward (+)

63156161 .. 63158272

Gene Structure 2112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCACCAAAAACTATAATGAGAGGAGCAAAAAGATTGTTAGAAGAGTGTGATGATGGAAATCGTGACAATGAACAAAAAATTCAACAAATTTTGTATGGTGAAGATTTTAGAGGAAGTGACATTCCACATTCACCTGTTATCTATGCACATCTGATTGTGGAGATCGACAAAACAAAGTTATATGCAGATACTTCCAAAGTAGGCATGAGGTGTAGGATCACCTGGCGAATGCGGGTTTCAGGCCATATGACTCCATTCTTTCTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Creatinase_N Creatinase_N_2 Peptidase_M24 Peptidase_M24_C

Protein Analysis

90

Amino Acids

10.47

Weight (kDa)

9.03

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Creatinase_N_2	PF16189	33 - 69	1.1e-07	Creatinase/Prolidase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013744)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503671 RchiOBHm_Chr2g0141721 RchiOBHm_Chr4g0402131
rosa_roxburghii	Rroxscaffold_1G00044310 Rroxscaffold_7G00168160
rosa_rugosa	Rorug01G0089800
rosa_samantha	Rh1AG107800 Rh2AG238200 Rh2BG532300 Rh5BG224000 Rh5CG334300 Rh5CG338900 Rh6CG231800 Rh6CG232000 Rh7DG420200
rosa_wichuraiana	Rw1G001970 Rw2G022380 Rw5G043560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	235
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	81, 90
AgsI	TTSAA	1 cut(s)	86
AjnI	CCWGG	1 cut(s)	224
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	244
ApoI	RAATTY	2 cut(s)	81, 90
AsuHPI	GGTGA	3 cut(s)	113, 126, 214
BanI	GGYRCC	1 cut(s)	4
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	246
BshNI	GGYRCC	1 cut(s)	4
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	165, 219
BspACI	CCGC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	4
BssMI	GATC	2 cut(s)	165, 219
Bst2UI	CCWGG	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	39
BstKTI	GATC	2 cut(s)	168, 222
BstMBI	GATC	2 cut(s)	165, 219
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	246
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	1 cut(s)	246
CviKI_1	RGCY	1 cut(s)	246
DpnI	GATC	2 cut(s)	167, 221
DpnII	GATC	2 cut(s)	165, 219
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	224
FaeI	CATG	1 cut(s)	211
FaiI	YATR	8 cut(s)	17, 99, 147, 184, 186, 209, 249, 251
FatI	CATG	1 cut(s)	207
FauI	CCCGC	1 cut(s)	228
FauNDI	CATATG	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	211
HinfI	GANTC	1 cut(s)	253
HphI	GGTGA	3 cut(s)	113, 126, 214
Hpy188I	TCNGA	2 cut(s)	156, 267
Hpy188III	TCNNGA	1 cut(s)	65
HpyCH4V	TGCA	2 cut(s)	149, 188
Hsp92II	CATG	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	165, 219
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	4 cut(s)	150, 211, 228, 238
MaeIII	GTNAC	2 cut(s)	65, 119
MalI	GATC	2 cut(s)	167, 221
MboI	GATC	2 cut(s)	165, 219
MboII	GAAGA	2 cut(s)	56, 116
MluCI	AATT	2 cut(s)	81, 90
MlyI	GAGTC	1 cut(s)	247
MnlI	CCTC	3 cut(s)	17, 107, 204
MspR9I	CCNGG	1 cut(s)	226
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	226
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	2 cut(s)	165, 219
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	65, 119
PctI	GAATGC	1 cut(s)	237
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	165, 219
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	226
SetI	ASST	3 cut(s)	139, 215, 227
SgeI	CNNG	7 cut(s)	77, 149, 220, 237, 238, 248, 255
Sse9I	AATT	2 cut(s)	81, 90
SsiI	CCGC	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	224
TaqI	TCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	81, 90
TseFI	GTSAC	2 cut(s)	65, 119
Tsp45I	GTSAC	2 cut(s)	65, 119
TspDTI	ATGAA	1 cut(s)	87
XapI	RAATTY	2 cut(s)	81, 90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.