RchiOBHm_Chr4g0417091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015741
Physical Location & Seq
Forward (+)
42315583 .. 42316608
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38718

Sequence Viewer

Length: 960 bp
ATGGTGATTCGGGCTAGTAGCATGTTTCTGTGGCAGCAGTTTGGTCCAGGGTTGGAGGATGGTGGCGGGATCTCGAAGTGGACGGATCGATCTCGATCTGTTCTTCTGGGATTAGGGATGAGGGCAAGAGTGGAGCAGCGCTGGGGTGGGGTTTGCCGGCGACGGGTGATGGCGTCATCGCTGCATTTGGGATCTGGGCAGCGGCTGGGCCTTCGATTTCGTACGTCTGCTGGGCATGGGGTGGATCTGCGTTGTGGCGCGGCGGTGCAGCAAGGTTTGGATGCAGCGCGGCTGTGTGGTGGTGTAAGGCGGCTGCTGGGTCCATGGGGGGAGTGGTGGTTGGGCCGGGCTTTTGCTTTGGGGCCTTGCTGGTGGTCTCTAATGTTTAATTATTTAGTTTCTCGTTGTTTTCTTTCCGTTGTTTTTGTGGTGAGTTGTTTTGATTTAGGTTTTTGGCATAGTTTAATAAGTCCCTACTCTTTCGAGCTAGGGTTCTGGTGTCTTGGTATGGTAGGTGTGTCTTGTTTTTCTCAGGAGTTCAATTCACTTTTTTGTGGTCAAAGTAATGGGGAGAAGCTCCTGCACATGGTCTGGCGGTTTTGGGTCATGGTGGCTGAAGTGCTGTGGATATGGCGTTATTTCCGGGGACTATATGTTTTACTCTCGATGTTATTTTGTTGTCAATGTGGATGTCACTTGCTCTTGCACGTGGTCTGGTTGGTTTGGGACACGGTGTTGATGAAGGGGAAGTGGTTGTTTGTAATGTTGGCTTCAAGGTTTAATCGTGACTCTCGGAAGTGGTTTTATGGTGTAGCCCGAGTTGATGGGCGATTAGGGTGGTTAGGGGTTGGGCTCTTTTGGCTCATGGATGTCATTGTGGATGACGGACCCGTAACTGAGGTTGTTCTTAGGGAGGAGAGTGGGGAATTTATGTCCACCACCGGGTGTTCCCATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

36.38

Weight (kDa)

9.11

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 260, 289
AciI CCGC 7 cut(s) 66, 202, 260, 263, 289, 310, 595
AclWI GGATC 4 cut(s) 77, 93, 199, 252
AcsI RAATTY 1 cut(s) 926
AcuI CTGAAG 1 cut(s) 636
AcvI CACGTG 1 cut(s) 709
AcyI GRCGYC 1 cut(s) 173
AdeI CACNNNGTG 1 cut(s) 945
AfaI GTAC 1 cut(s) 223
AfeI AGCGCT 1 cut(s) 140
AfiI CCNNNNNNNGG 3 cut(s) 163, 586, 942
AgsI TTSAA 2 cut(s) 541, 774
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 2 cut(s) 487, 577
AluI AGCT 2 cut(s) 487, 577
Alw26I GTCTC 1 cut(s) 381
AlwI GGATC 4 cut(s) 77, 93, 199, 252
AlwNI CAGNNNCTG 1 cut(s) 205
Ama87I CYCGRG 1 cut(s) 816
Aor51HI AGCGCT 1 cut(s) 140
AoxI GGCC 3 cut(s) 208, 343, 362
ApeKI GCWGC 7 cut(s) 34, 136, 181, 199, 268, 284, 313
ApoI RAATTY 1 cut(s) 926
AspLEI GCGC 3 cut(s) 141, 260, 289
AspS9I GGNCC 6 cut(s) 44, 208, 320, 343, 362, 887
AsuC2I CCSGG 3 cut(s) 347, 644, 943
AsuHPI GGTGA 3 cut(s) 16, 178, 442
AvaI CYCGRG 1 cut(s) 816
AvaII GGWCC 3 cut(s) 44, 320, 887
BanII GRGCYC 1 cut(s) 855
BbrPI CACGTG 1 cut(s) 709
BbvI GCAGC 7 cut(s) 46, 148, 168, 211, 280, 296, 300
BccI CCATC 3 cut(s) 53, 163, 818
BciT130I CCWGG 1 cut(s) 48
BcnI CCSGG 3 cut(s) 347, 644, 943
BcoDI GTCTC 1 cut(s) 381
BfaI CTAG 2 cut(s) 15, 488
BfoI RGCGCY 1 cut(s) 142
Bme1390I CCNGG 4 cut(s) 48, 347, 644, 943
Bme18I GGWCC 3 cut(s) 44, 320, 887
BmeT110I CYCGRG 1 cut(s) 816
BmgT120I GGNCC 6 cut(s) 44, 208, 320, 343, 362, 887
BmiI GGNNCC 3 cut(s) 321, 363, 889
BmrFI CCNGG 4 cut(s) 48, 347, 644, 943
BmsI GCATC 1 cut(s) 271
BpuMI CCSGG 3 cut(s) 347, 644, 943
Bsa29I ATCGAT 1 cut(s) 88
BsaAI YACGTR 1 cut(s) 709
BsaBI GATNNNNATC 1 cut(s) 94
BsaHI GRCGYC 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 381
BsaJI CCNNGG 3 cut(s) 47, 323, 643
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 586, 942
Bse118I RCCGGY 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 94
BseBI CCWGG 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 88
BseDI CCNNGG 3 cut(s) 47, 323, 643
BseGI GGATG 6 cut(s) 64, 123, 286, 695, 874, 886
BseJI GATNNNNATC 1 cut(s) 94
BseLI CCNNNNNNNGG 3 cut(s) 163, 586, 942
BseMII CTCAG 2 cut(s) 545, 888
BseRI GAGGAG 1 cut(s) 929
BseXI GCAGC 7 cut(s) 46, 148, 168, 211, 280, 296, 300
BseYI CCCAGC 4 cut(s) 141, 205, 230, 316
BsgI GTGCAG 2 cut(s) 287, 566
Bsh1236I CGCG 2 cut(s) 260, 289
BshFI GGCC 3 cut(s) 210, 345, 364
BshVI ATCGAT 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 816
BsiSI CCGG 4 cut(s) 157, 346, 643, 942
BsiWI CGTACG 1 cut(s) 221
BslFI GGGAC 3 cut(s) 456, 660, 740
BslI CCNNNNNNNGG 3 cut(s) 163, 586, 942
BsmAI GTCTC 1 cut(s) 381
BsmFI GGGAC 3 cut(s) 456, 660, 740
BsnI GGCC 3 cut(s) 210, 345, 364
Bso31I GGTCTC 1 cut(s) 381
BsoBI CYCGRG 1 cut(s) 816
Bsp1286I GDGCHC 1 cut(s) 855
Bsp143I GATC 6 cut(s) 69, 85, 89, 95, 191, 244
Bsp19I CCATGG 1 cut(s) 323
BspACI CCGC 7 cut(s) 66, 202, 260, 263, 289, 310, 595
BspANI GGCC 3 cut(s) 210, 345, 364
BspCNI CTCAG 2 cut(s) 544, 889
BspDI ATCGAT 1 cut(s) 88
BspFNI CGCG 2 cut(s) 260, 289
BspLI GGNNCC 3 cut(s) 321, 363, 889
BspPI GGATC 4 cut(s) 77, 93, 199, 252
BspTNI GGTCTC 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 156
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 3 cut(s) 47, 323, 643
BssMI GATC 6 cut(s) 69, 85, 89, 95, 191, 244
BssNI GRCGYC 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 733
BstACI GRCGYC 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 709
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 3 cut(s) 531, 897, 908
BstDSI CCRYGG 1 cut(s) 323
BstF5I GGATG 6 cut(s) 64, 123, 286, 695, 874, 886
BstFNI CGCG 2 cut(s) 260, 289
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 3 cut(s) 141, 260, 289
BstKTI GATC 6 cut(s) 72, 88, 92, 98, 194, 247
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 6 cut(s) 69, 85, 89, 95, 191, 244
BstMWI GCNNNNNNNGC 1 cut(s) 859
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 4 cut(s) 46, 345, 642, 941
BstUI CGCG 2 cut(s) 260, 289
BstV1I GCAGC 7 cut(s) 46, 148, 168, 211, 280, 296, 300
BstX2I RGATCY 3 cut(s) 69, 191, 244
BstYI RGATCY 3 cut(s) 69, 191, 244
Bsu15I ATCGAT 1 cut(s) 88
BsuRI GGCC 3 cut(s) 210, 345, 364
BsuTUI ATCGAT 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 323
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 6 cut(s) 64, 123, 286, 695, 874, 886
Cac8I GCNNGC 1 cut(s) 158
CaiI CAGNNNCTG 1 cut(s) 205
CfoI GCGC 3 cut(s) 141, 260, 289
Cfr10I RCCGGY 1 cut(s) 156
Cfr13I GGNCC 6 cut(s) 44, 208, 320, 343, 362, 887
ClaI ATCGAT 1 cut(s) 88
CseI GACGC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 222
CviAII CATG 6 cut(s) 22, 236, 324, 586, 607, 865
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 3 cut(s) 531, 897, 908
DpnI GATC 6 cut(s) 71, 87, 91, 97, 193, 246
DpnII GATC 6 cut(s) 69, 85, 89, 95, 191, 244
DraIII CACNNNGTG 1 cut(s) 945
Eco130I CCWWGG 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 855
Eco31I GGTCTC 1 cut(s) 381
Eco47I GGWCC 3 cut(s) 44, 320, 887
Eco47III AGCGCT 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 636
Eco72I CACGTG 1 cut(s) 709
Eco88I CYCGRG 1 cut(s) 816
EcoO109I RGGNCCY 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 855
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 6 cut(s) 25, 239, 327, 589, 610, 868
FaqI GGGAC 3 cut(s) 456, 660, 740
FatI CATG 6 cut(s) 21, 235, 323, 585, 606, 864
FauI CCCGC 1 cut(s) 59
FokI GGATG 6 cut(s) 71, 130, 293, 702, 881, 893
FriOI GRGCYC 1 cut(s) 855
FspBI CTAG 2 cut(s) 15, 488
GlaI GCGC 3 cut(s) 140, 259, 288
GsaI CCCAGC 4 cut(s) 145, 209, 234, 320
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 3 cut(s) 210, 345, 364
HapII CCGG 4 cut(s) 157, 346, 643, 942
HgaI GACGC 1 cut(s) 162
HhaI GCGC 3 cut(s) 141, 260, 289
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 6 cut(s) 25, 239, 327, 589, 610, 868
Hin6I GCGC 3 cut(s) 139, 258, 287
HinP1I GCGC 3 cut(s) 139, 258, 287
HinfI GANTC 2 cut(s) 7, 788
HpaII CCGG 4 cut(s) 157, 346, 643, 942
HphI GGTGA 3 cut(s) 16, 178, 442
Hpy166II GTNNAC 2 cut(s) 81, 936
Hpy188I TCNGA 1 cut(s) 795
Hpy188III TCNNGA 5 cut(s) 73, 93, 533, 664, 785
Hpy8I GTNNAC 2 cut(s) 81, 936
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 2 cut(s) 221, 736
HpyCH4III ACNGT 1 cut(s) 733
HpyCH4IV ACGT 2 cut(s) 224, 708
HpyCH4V TGCA 5 cut(s) 184, 268, 284, 583, 706
HpyF10VI GCNNNNNNNGC 1 cut(s) 859
HpyF3I CTNAG 3 cut(s) 531, 897, 908
HpySE526I ACGT 2 cut(s) 224, 708
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 6 cut(s) 25, 239, 327, 589, 610, 868
HspAI GCGC 3 cut(s) 139, 258, 287
KroI GCCGGC 1 cut(s) 156
KroNI GCCGGC 1 cut(s) 158
Kzo9I GATC 6 cut(s) 69, 85, 89, 95, 191, 244
LmnI GCTCC 2 cut(s) 133, 582
Lsp1109I GCAGC 7 cut(s) 46, 148, 168, 211, 280, 296, 300
LweI GCATC 1 cut(s) 271
MaeI CTAG 2 cut(s) 15, 488
MaeII ACGT 2 cut(s) 224, 708
MaeIII GTNAC 3 cut(s) 692, 785, 892
MalI GATC 6 cut(s) 71, 87, 91, 97, 193, 246
MboI GATC 6 cut(s) 69, 85, 89, 95, 191, 244
MboII GAAGA 1 cut(s) 95
MflI RGATCY 3 cut(s) 69, 191, 244
MhlI GDGCHC 1 cut(s) 855
MluCI AATT 3 cut(s) 388, 541, 926
MlyI GAGTC 1 cut(s) 782
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 4 cut(s) 49, 114, 892, 907
MroNI GCCGGC 1 cut(s) 156
MseI TTAA 3 cut(s) 387, 464, 780
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 4 cut(s) 157, 346, 643, 942
MspR9I CCNGG 4 cut(s) 48, 347, 644, 943
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 2 cut(s) 260, 289
MwoI GCNNNNNNNGC 1 cut(s) 859
NaeI GCCGGC 1 cut(s) 158
NciI CCSGG 3 cut(s) 347, 644, 943
NcoI CCATGG 1 cut(s) 323
NdeII GATC 6 cut(s) 69, 85, 89, 95, 191, 244
NgoMIV GCCGGC 1 cut(s) 156
NlaIII CATG 6 cut(s) 25, 239, 327, 589, 610, 868
NlaIV GGNNCC 3 cut(s) 321, 363, 889
NmuCI GTSAC 2 cut(s) 692, 785
NspI RCATGY 1 cut(s) 25
PdiI GCCGGC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 7
Pfl23II CGTACG 1 cut(s) 221
PleI GAGTC 1 cut(s) 782
PmaCI CACGTG 1 cut(s) 709
PmlI CACGTG 1 cut(s) 709
PpsI GAGTC 1 cut(s) 782
Ppu21I YACGTR 1 cut(s) 709
Psp6I CCWGG 1 cut(s) 46
PspCI CACGTG 1 cut(s) 709
PspFI CCCAGC 4 cut(s) 141, 205, 230, 316
PspGI CCWGG 1 cut(s) 46
PspLI CGTACG 1 cut(s) 221
PspN4I GGNNCC 3 cut(s) 321, 363, 889
PspPI GGNCC 6 cut(s) 44, 208, 320, 343, 362, 887
PstNI CAGNNNCTG 1 cut(s) 205
PsuI RGATCY 3 cut(s) 69, 191, 244
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SaqAI TTAA 3 cut(s) 387, 464, 780
Sau3AI GATC 6 cut(s) 69, 85, 89, 95, 191, 244
Sau96I GGNCC 6 cut(s) 44, 208, 320, 343, 362, 887
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 4 cut(s) 48, 347, 644, 943
SduI GDGCHC 1 cut(s) 855
SetI ASST 9 cut(s) 227, 277, 451, 489, 517, 579, 711, 779, 903
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 3 cut(s) 44, 320, 887
Sse9I AATT 3 cut(s) 388, 541, 926
SsiI CCGC 7 cut(s) 66, 202, 260, 263, 289, 310, 595
SspMI CTAG 2 cut(s) 15, 488
StyD4I CCNGG 4 cut(s) 46, 345, 642, 941
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 1 cut(s) 733
TaiI ACGT 2 cut(s) 227, 711
TaqI TCGA 6 cut(s) 74, 88, 94, 214, 483, 665
TasI AATT 3 cut(s) 388, 541, 926
TauI GCSGC 4 cut(s) 205, 263, 292, 313
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 3 cut(s) 387, 464, 780
Tru9I TTAA 3 cut(s) 387, 464, 780
TseFI GTSAC 2 cut(s) 692, 785
TseI GCWGC 7 cut(s) 34, 136, 181, 199, 268, 284, 313
Tsp45I GTSAC 2 cut(s) 692, 785
TspDTI ATGAA 1 cut(s) 755
TspGWI ACGGA 3 cut(s) 98, 406, 900
VpaK11BI GGWCC 3 cut(s) 44, 320, 887
XapI RAATTY 1 cut(s) 926
XceI RCATGY 1 cut(s) 25
XcmI CCANNNNNNNNNTGG 1 cut(s) 330
XspI CTAG 2 cut(s) 15, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.