RchiOBHm_Chr7g0185391

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015741
Physical Location & Seq
Forward (+)
5513413 .. 5514167
755 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16544

Sequence Viewer

Length: 660 bp
ATGGATCGTACGGCGCTGATTCCCTCTCCGAGTTTGGTAGATCGGCGAAGAGTGCAAGGGTGTCGAACTTTCTGGCGGTTGGATGAAGCTGGGCGACAAGGCACGGCGAGATTCTCACTGATACTCGGTGTGGGCTCATCAAGATCTGGCTTTATGCCTGGATCTGGCCGACAAAAGGTGAGGTTTGTGTGGCTTGCTGCGTGGACGGAGTCTTTCCGGCGGGGCGAGTTCGACTGGACAAATCTATGGTGGTGGTCTACAGGAGGGTCAACTGAGCGGAGGAAGATGATTGTGGCGGCTGGTCTATGGTTGGGTCAAATTAAGGTGCCATGGATGTGGTGTTGTTCCTGGGGACGAATTGGTTTATTGTCGGTTTTATCTTATGGTCAATGTGCTGACGAGCGATCCTTGCACGTGGTCTGGCATCTTTGGGACACGGTGTGGAAGAGGGCGTTGGTTGTTGTTGCGGTTGTCTATGAGGTGGCATCGATATTCTCGGGATTCTCGGTAGCCCGAGGTGTTGGGCGGTATAGGTGGTTAGGGGTTGAGCTCTTTCGGCTCATGGAAGTCATTTATGATGATGGACCCGTAACTGGTTTAGGTTTTAGGGAGGAGAGTGGGGAATTCTTGTCCACCACCGGTTATTCCCGTGTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

25.03

Weight (kDa)

9.94

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 325
AccBSI CCGCTC 1 cut(s) 277
AccI GTMKAC 1 cut(s) 257
AciI CCGC 6 cut(s) 76, 220, 277, 296, 467, 526
AclWI GGATC 3 cut(s) 12, 169, 399
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 1 cut(s) 623
AcvI CACGTG 1 cut(s) 415
AdeI CACNNNGTG 1 cut(s) 441
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 3 cut(s) 164, 175, 593
AgeI ACCGGT 1 cut(s) 638
AjnI CCWGG 2 cut(s) 157, 347
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AluBI AGCT 2 cut(s) 89, 550
AluI AGCT 2 cut(s) 89, 550
Alw21I GWGCWC 1 cut(s) 552
AlwI GGATC 3 cut(s) 12, 169, 399
Ama87I CYCGRG 2 cut(s) 496, 513
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 623
AsiGI ACCGGT 1 cut(s) 638
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 584
AsuHPI GGTGA 1 cut(s) 190
AvaI CYCGRG 2 cut(s) 496, 513
AvaII GGWCC 1 cut(s) 584
BanI GGYRCC 1 cut(s) 325
BanII GRGCYC 2 cut(s) 137, 552
BbrPI CACGTG 1 cut(s) 415
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 575
BceAI ACGGC 2 cut(s) 27, 120
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciT130I CCWGG 2 cut(s) 159, 349
BfmI CTRYAG 1 cut(s) 258
BfoI RGCGCY 1 cut(s) 17
BglII AGATCT 1 cut(s) 143
BisI GCNGC 2 cut(s) 198, 297
BlsI GCNGC 2 cut(s) 199, 298
Bme1390I CCNGG 2 cut(s) 159, 349
Bme18I GGWCC 1 cut(s) 584
BmeT110I CYCGRG 2 cut(s) 496, 513
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 2 cut(s) 327, 586
BmrFI CCNGG 2 cut(s) 159, 349
BmsI GCATC 2 cut(s) 433, 494
Bsa29I ATCGAT 1 cut(s) 488
BsaAI YACGTR 1 cut(s) 415
BsaJI CCNNGG 3 cut(s) 329, 348, 514
BsaWI WCCGGW 1 cut(s) 638
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 175, 593
Bse118I RCCGGY 1 cut(s) 638
Bse1I ACTGG 2 cut(s) 239, 598
BseBI CCWGG 2 cut(s) 159, 349
BseCI ATCGAT 1 cut(s) 488
BseDI CCNNGG 3 cut(s) 329, 348, 514
BseGI GGATG 2 cut(s) 88, 339
BseLI CCNNNNNNNGG 3 cut(s) 164, 175, 593
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 2 cut(s) 239, 598
BseRI GAGGAG 1 cut(s) 626
BseXI GCAGC 1 cut(s) 184
BseYI CCCAGC 1 cut(s) 89
BshFI GGCC 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 325
BshTI ACCGGT 1 cut(s) 638
BshVI ATCGAT 1 cut(s) 488
BsiHKAI GWGCWC 1 cut(s) 552
BsiHKCI CYCGRG 2 cut(s) 496, 513
BsiSI CCGG 2 cut(s) 217, 639
BsiWI CGTACG 1 cut(s) 8
BslFI GGGAC 2 cut(s) 366, 446
BslI CCNNNNNNNGG 3 cut(s) 164, 175, 593
BsmFI GGGAC 2 cut(s) 366, 446
BsnI GGCC 1 cut(s) 168
BsoBI CYCGRG 2 cut(s) 496, 513
Bsp1286I GDGCHC 2 cut(s) 137, 552
Bsp143I GATC 5 cut(s) 4, 40, 143, 161, 404
Bsp19I CCATGG 1 cut(s) 329
BspACI CCGC 6 cut(s) 76, 220, 277, 296, 467, 526
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 265
BspDI ATCGAT 1 cut(s) 488
BspLI GGNNCC 2 cut(s) 327, 586
BspPI GGATC 3 cut(s) 12, 169, 399
BspT107I GGYRCC 1 cut(s) 325
BsrBI CCGCTC 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 638
BsrI ACTGG 2 cut(s) 239, 598
BssAI RCCGGY 1 cut(s) 638
BssECI CCNNGG 3 cut(s) 329, 348, 514
BssMI GATC 5 cut(s) 4, 40, 143, 161, 404
BssT1I CCWWGG 1 cut(s) 329
Bst2UI CCWGG 2 cut(s) 159, 349
Bst4CI ACNGT 1 cut(s) 439
Bst6I CTCTTC 2 cut(s) 43, 440
BstBAI YACGTR 1 cut(s) 415
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 329
BstF5I GGATG 2 cut(s) 88, 339
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 5 cut(s) 7, 43, 146, 164, 407
BstMBI GATC 5 cut(s) 4, 40, 143, 161, 404
BstMWI GCNNNNNNNGC 3 cut(s) 52, 409, 556
BstNI CCWGG 2 cut(s) 159, 349
BstSCI CCNGG 2 cut(s) 157, 347
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 2 cut(s) 143, 161
BstXI CCANNNNNNTGG 1 cut(s) 336
BstYI RGATCY 2 cut(s) 143, 161
Bsu15I ATCGAT 1 cut(s) 488
BsuRI GGCC 1 cut(s) 168
BsuTUI ATCGAT 1 cut(s) 488
BtgI CCRYGG 1 cut(s) 329
BtsCI GGATG 2 cut(s) 88, 339
BtsIMutI CAGTG 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 195
CfoI GCGC 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 638
Cfr13I GGNCC 1 cut(s) 584
ClaI ATCGAT 1 cut(s) 488
Csp6I GTAC 1 cut(s) 9
CspAI ACCGGT 1 cut(s) 638
CviAII CATG 2 cut(s) 330, 562
CviJI RGCY 9 cut(s) 89, 135, 150, 168, 193, 299, 512, 550, 559
CviKI_1 RGCY 9 cut(s) 89, 135, 150, 168, 193, 299, 512, 550, 559
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 273
DpnI GATC 5 cut(s) 6, 42, 145, 163, 406
DpnII GATC 5 cut(s) 4, 40, 143, 161, 404
DraIII CACNNNGTG 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 166
Eam1104I CTCTTC 2 cut(s) 43, 440
EarI CTCTTC 2 cut(s) 43, 440
Ecl136II GAGCTC 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 329
Eco24I GRGCYC 2 cut(s) 137, 552
Eco47I GGWCC 1 cut(s) 584
Eco53kI GAGCTC 1 cut(s) 550
Eco72I CACGTG 1 cut(s) 415
Eco88I CYCGRG 2 cut(s) 496, 513
EcoICRI GAGCTC 1 cut(s) 550
EcoRI GAATTC 1 cut(s) 623
EcoRII CCWGG 2 cut(s) 157, 347
EcoT14I CCWWGG 1 cut(s) 329
EcoT38I GRGCYC 2 cut(s) 137, 552
ErhI CCWWGG 1 cut(s) 329
FaeI CATG 2 cut(s) 333, 565
FaqI GGGAC 2 cut(s) 366, 446
FatI CATG 2 cut(s) 329, 561
FauI CCCGC 1 cut(s) 213
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 198, 297
FokI GGATG 2 cut(s) 95, 346
FriOI GRGCYC 2 cut(s) 137, 552
Fsp4HI GCNGC 2 cut(s) 198, 297
GlaI GCGC 1 cut(s) 15
GluI GCNGC 2 cut(s) 198, 297
GsaI CCCAGC 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 1 cut(s) 168
HapII CCGG 2 cut(s) 217, 639
HhaI GCGC 1 cut(s) 16
Hin1II CATG 2 cut(s) 333, 565
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 4 cut(s) 19, 111, 209, 501
HpaII CCGG 2 cut(s) 217, 639
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 4 cut(s) 204, 258, 270, 633
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 2 cut(s) 141, 498
Hpy8I GTNNAC 4 cut(s) 204, 258, 270, 633
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 2 cut(s) 55, 412
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 409, 556
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 414
Hsp92II CATG 2 cut(s) 333, 565
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 5 cut(s) 4, 40, 143, 161, 404
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 2 cut(s) 433, 494
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 1 cut(s) 589
MalI GATC 5 cut(s) 6, 42, 145, 163, 406
MbiI CCGCTC 1 cut(s) 277
MboI GATC 5 cut(s) 4, 40, 143, 161, 404
MboII GAAGA 3 cut(s) 60, 295, 457
MflI RGATCY 2 cut(s) 143, 161
MhlI GDGCHC 2 cut(s) 137, 552
MluCI AATT 3 cut(s) 318, 357, 623
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 8 cut(s) 34, 174, 257, 273, 441, 472, 509, 604
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 334
MspI CCGG 2 cut(s) 217, 639
MspR9I CCNGG 2 cut(s) 159, 349
MvaI CCWGG 2 cut(s) 159, 349
MwoI GCNNNNNNNGC 3 cut(s) 52, 409, 556
NcoI CCATGG 1 cut(s) 329
NdeII GATC 5 cut(s) 4, 40, 143, 161, 404
NlaIII CATG 2 cut(s) 333, 565
NlaIV GGNNCC 2 cut(s) 327, 586
PfeI GAWTC 3 cut(s) 19, 111, 501
Pfl23II CGTACG 1 cut(s) 8
PflFI GACNNNGTC 1 cut(s) 208
PinAI ACCGGT 1 cut(s) 638
PkrI GCNGC 2 cut(s) 199, 298
PleI GAGTC 1 cut(s) 217
PmaCI CACGTG 1 cut(s) 415
PmlI CACGTG 1 cut(s) 415
PpsI GAGTC 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 415
Psp124BI GAGCTC 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 157, 347
PspCI CACGTG 1 cut(s) 415
PspFI CCCAGC 1 cut(s) 89
PspGI CCWGG 2 cut(s) 157, 347
PspLI CGTACG 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 327, 586
PspPI GGNCC 1 cut(s) 584
PsuI RGATCY 2 cut(s) 143, 161
PsyI GACNNNGTC 1 cut(s) 208
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 334
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 2 cut(s) 198, 297
Sau3AI GATC 5 cut(s) 4, 40, 143, 161, 404
Sau96I GGNCC 1 cut(s) 584
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 159, 349
SduI GDGCHC 2 cut(s) 137, 552
SfaNI GCATC 2 cut(s) 433, 494
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 334
Sse9I AATT 3 cut(s) 318, 357, 623
SsiI CCGC 6 cut(s) 76, 220, 277, 296, 467, 526
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 2 cut(s) 157, 347
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 1 cut(s) 439
TaiI ACGT 1 cut(s) 417
TaqI TCGA 3 cut(s) 64, 231, 488
TasI AATT 3 cut(s) 318, 357, 623
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 3 cut(s) 19, 111, 501
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 1 cut(s) 123
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 99
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 1 cut(s) 123
Tth111I GACNNNGTC 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 584
XapI RAATTY 1 cut(s) 623
XmiI GTMKAC 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.