Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015741

Physical Location & Seq

Genomic Coordinates Forward (+)

7258816 .. 7266490

Gene Structure 7675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0091100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGGAAACCCTAAACCCCACCACCAGCACCACCGTGGACGACGCCGCGGCGAACATCGGCTTCTCAATCCTGATGCGCTTCTCTGACAGCCGTCGCGAAATCGACCTCGAAATCCGCAAGCTCATAGCCATCATGTGCCAGGTATTCCGAGACCACAAGGCTCCTCCGACGCCGCTGGCCTACTTGGGCGCCACGTGCTCCTCTCTCGACCTGATCGCCGCTTCGAAGCCCCGACCTTCCGAAGACGTGCTCCACGCCCACATCACAATTCTGTCCATCGTCATCCCCAAAGTCCCGCCAGCATTTCTCATCAACAATCTCCAGTTGGTCTGCAATTCCTTAGCCCCAGCTCTCCGTTCTTCATCTCCAAGAGCAAGCTTCGACAGTGCCGCCTGCACAGGAGTTAAATGCATAGCTCAGTTGCTCATTAGCAGCGCTAACTGCGTCAACAACTGGTCACAAGTTTCGAAACCCTTCAGGTCCTTGTTCAGCTTCGCTTATGTCGTCTCCAGCATCGAGCTAAGAGAACAAGCAGGTTTGTGTGTTCACGACACACTGCAAAGTTTTCGAGGAACTCCCCTGTTTGGCCCTGCAAGTAAAACCATTACTGACTTGTTAATGAAAAAGTATCTTCCGCCACGTGCGGAATCAAATACTGATAGAGTTAATCGCATCGACCAACTCAAGGCCATGTATACTTTGAATCTTGTGATGCTATGCCTTGGCGCTATGTCAACCGAGGACAGAACTGCTGTGCTCGTCTACTTTAAGGATCTCTTAGAACTGCACCAGACCCATGTTACAGGACTCATCACAGATGCTCTGTACAGACTCTGCCTCCATCCATCATCACCAGATGTTGACCTCGAATTGTTGCTCGATCTAATATGCTCAATATGTCTTTCTGTCTCCCAACACAAGACGAATTTCATCATGAAAACTATAGCTGGTTTGCTCAATTTTGGAGTGCCTAAAGTCTATTCCCTGAACAAGCAAATCTGCAAAATTAAACTCCCTATTATGTTTGATGCACTCATTGTTTTACTCGAACAGTCTGACTTAAGGACCGTCCAAGATGCAGCAAACGCTCTTATGCGTCTTGTTGCTTATATTGATGAAGGCATGATTAAACAGGGAGTTGACCGTGCTCTGATGAATGCAAATATGGATGATGGAAGCCAGTCTGAGCCAACTCTAATTGAAAAATTGTGTGCTACTTTTCCAAAGTTACTTTCTTATCGCTGCACTAATATCCGGCACCTTGTTTTTGAAATAGTCTCAACAATGTTCAATAAATTAGGAGTACACTCTTCTTATTTGATGAGGGGTACAGTCAAGACCTTGGCAGACATGCAGATTTTGCCTGATAGAGAATTCCCTTTCAAGGAAGAGGTTAAGCTTCTTCTAGAAATGGTTAGTGAGAAATGTGGGCTTGATGCTATTTCGGCCATTATCCCTCAAGAACACATGGAACTGCTTGCAGAGATCAATGAACAGCTGGGTTCTAAATCTGTGGAGGCGAGATCTAATGTGTCCACAGCAACTACTGTCAGGATTGTTTCGCCTCTAGCCTCAAATAGGACAGAGTTAAACAAGACTAACTTTCACGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

537

Amino Acids

59.44

Weight (kDa)

6.86

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_RRP12_N	PF25772	9 - 284	4.1e-56	RRP12-like, N-terminal HEAT repeats
RRP12_HEAT	PF08161	356 - 487	7.3e-14	Ribosomal RNA-processing protein 12, HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015741)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135791 RchiOBHm_Chr4g0417091 RchiOBHm_Chr5g0011621 RchiOBHm_Chr7g0185391
rosa_multiflora	Rmu_sc0000367.1_g000002 Rmu_sc0001911.1_g000002 Rmu_sc0002218.1_g000003 Rmu_sc0002316.1_g000068 Rmu_sc0010161.1_g000017
rosa_roxburghii	Rroxscaffold_2G00148360
rosa_rugosa	Rorug02G0091100 Rorug02G0128400 Rorug03G0240300 Rorug04G0138600 Rorug04G0178800 Rorug05G0247200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	524
AccB1I	GGYRCC	2 cut(s)	188, 1257
AccI	GTMKAC	2 cut(s)	695, 762
AccII	CGCG	3 cut(s)	47, 96, 1610
AciI	CCGC	9 cut(s)	45, 47, 115, 173, 219, 296, 390, 635, 644
AclWI	GGATC	1 cut(s)	780
AcoI	YGGCCR	1 cut(s)	1446
AcsI	RAATTY	2 cut(s)	925, 1373
AcuI	CTGAAG	1 cut(s)	460
AcvI	CACGTG	2 cut(s)	195, 641
AcyI	GRCGYC	3 cut(s)	42, 170, 189
AfaI	GTAC	3 cut(s)	827, 1305, 1330
AfeI	AGCGCT	1 cut(s)	436
AfiI	CCNNNNNNNGG	4 cut(s)	584, 685, 1384, 1578
AflII	CTTAAG	1 cut(s)	1060
AflIII	ACRYGT	1 cut(s)	1608
AgsI	TTSAA	5 cut(s)	703, 1202, 1271, 1291, 1384
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	138
AjuI	GAANNNNNNNTTGG	2 cut(s)	1216, 1248
AleI	CACNNNNGTG	1 cut(s)	32
AluBI	AGCT	9 cut(s)	121, 350, 378, 416, 492, 520, 947, 1399, 1498
AluI	AGCT	9 cut(s)	121, 350, 378, 416, 492, 520, 947, 1399, 1498
Alw21I	GWGCWC	4 cut(s)	200, 252, 759, 1150
Alw26I	GTCTC	4 cut(s)	144, 511, 913, 1282
AlwI	GGATC	1 cut(s)	780
AlwNI	CAGNNNCTG	1 cut(s)	834
Aor51HI	AGCGCT	1 cut(s)	436
AoxI	GGCC	4 cut(s)	177, 586, 687, 1446
ApeKI	GCWGC	3 cut(s)	432, 1079, 1242
ApoI	RAATTY	2 cut(s)	925, 1373
Asp700I	GAANNNNTTC	1 cut(s)	473
AspLEI	GCGC	4 cut(s)	78, 191, 437, 728
AspS9I	GGNCC	3 cut(s)	480, 587, 1065
AsuHPI	GGTGA	1 cut(s)	843
AsuII	TTCGAA	2 cut(s)	224, 467
AvaII	GGWCC	2 cut(s)	480, 1065
BanI	GGYRCC	2 cut(s)	188, 1257
BbrPI	CACGTG	2 cut(s)	195, 641
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	4 cut(s)	200, 252, 759, 1150
BbvI	GCAGC	3 cut(s)	444, 1091, 1229
BccI	CCATC	5 cut(s)	137, 284, 849, 853, 1166
BceAI	ACGGC	1 cut(s)	75
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BciT130I	CCWGG	1 cut(s)	140
BcoDI	GTCTC	4 cut(s)	144, 511, 913, 1282
BfaI	CTAG	2 cut(s)	1406, 1568
BfmI	CTRYAG	1 cut(s)	942
BfoI	RGCGCY	3 cut(s)	192, 438, 729
BfrI	CTTAAG	1 cut(s)	1060
BfuAI	ACCTGC	1 cut(s)	524
BglII	AGATCT	1 cut(s)	1523
BisI	GCNGC	8 cut(s)	45, 48, 173, 219, 390, 433, 1080, 1243
BlsI	GCNGC	8 cut(s)	46, 49, 174, 220, 391, 434, 1081, 1244
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	2 cut(s)	480, 1065
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	3 cut(s)	480, 587, 1065
BmiI	GGNNCC	3 cut(s)	162, 190, 1259
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	8 cut(s)	63, 522, 681, 702, 808, 1018, 1066, 1426
BoxI	GACNNNNGTC	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	249
BpmI	CTGGAG	2 cut(s)	305, 493
Bpu10I	CCTNAGC	1 cut(s)	340
Bpu14I	TTCGAA	2 cut(s)	224, 467
BpuEI	CTTGAG	2 cut(s)	668, 1443
BsaAI	YACGTR	2 cut(s)	195, 641
BsaHI	GRCGYC	3 cut(s)	42, 170, 189
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	5 cut(s)	33, 45, 721, 738, 1341
BsaXI	ACNNNNNCTCC	2 cut(s)	822, 852
Bsc4I	CCNNNNNNNGG	4 cut(s)	584, 685, 1384, 1578
Bse1I	ACTGG	3 cut(s)	322, 458, 1180
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	5 cut(s)	33, 45, 721, 738, 1341
BseGI	GGATG	3 cut(s)	282, 841, 1174
BseLI	CCNNNNNNNGG	4 cut(s)	584, 685, 1384, 1578
BseMII	CTCAG	2 cut(s)	431, 1176
BseNI	ACTGG	3 cut(s)	322, 458, 1180
BseRI	GAGGAG	2 cut(s)	153, 190
BseXI	GCAGC	3 cut(s)	444, 1091, 1229
BseYI	CCCAGC	2 cut(s)	346, 1498
BsgI	GTGCAG	3 cut(s)	379, 770, 1228
Bsh1236I	CGCG	3 cut(s)	47, 96, 1610
BshFI	GGCC	4 cut(s)	179, 588, 689, 1448
BshNI	GGYRCC	2 cut(s)	188, 1257
BsiHKAI	GWGCWC	4 cut(s)	200, 252, 759, 1150
BsiSI	CCGG	1 cut(s)	1255
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	4 cut(s)	584, 685, 1384, 1578
BsmAI	GTCTC	4 cut(s)	144, 511, 913, 1282
BsmBI	CGTCTC	1 cut(s)	511
BsmFI	GGGAC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	1162
BsnI	GGCC	4 cut(s)	179, 588, 689, 1448
Bso31I	GGTCTC	1 cut(s)	144
Bsp119I	TTCGAA	2 cut(s)	224, 467
Bsp1286I	GDGCHC	4 cut(s)	200, 252, 759, 1150
Bsp1407I	TGTACA	1 cut(s)	825
Bsp143I	GATC	5 cut(s)	213, 772, 880, 1485, 1523
Bsp68I	TCGCGA	1 cut(s)	96
BspACI	CCGC	9 cut(s)	45, 47, 115, 173, 219, 296, 390, 635, 644
BspANI	GGCC	4 cut(s)	179, 588, 689, 1448
BspCNI	CTCAG	2 cut(s)	430, 1177
BspFNI	CGCG	3 cut(s)	47, 96, 1610
BspHI	TCATGA	1 cut(s)	933
BspLI	GGNNCC	3 cut(s)	162, 190, 1259
BspMI	ACCTGC	1 cut(s)	524
BspPI	GGATC	1 cut(s)	780
BspT104I	TTCGAA	2 cut(s)	224, 467
BspT107I	GGYRCC	2 cut(s)	188, 1257
BspTI	CTTAAG	1 cut(s)	1060
BspTNI	GGTCTC	1 cut(s)	144
BsrGI	TGTACA	1 cut(s)	825
BsrI	ACTGG	3 cut(s)	322, 458, 1180
BssECI	CCNNGG	5 cut(s)	33, 45, 721, 738, 1341
BssMI	GATC	5 cut(s)	213, 772, 880, 1485, 1523
BssNAI	GTATAC	1 cut(s)	696
BssNI	GRCGYC	3 cut(s)	42, 170, 189
BssT1I	CCWWGG	2 cut(s)	721, 1341
Bst1107I	GTATAC	1 cut(s)	696
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	7 cut(s)	34, 386, 1053, 1069, 1145, 1333, 1549
Bst6I	CTCTTC	2 cut(s)	1315, 1383
BstACI	GRCGYC	3 cut(s)	42, 170, 189
BstAFI	CTTAAG	1 cut(s)	1060
BstAPI	GCANNNNNTGC	1 cut(s)	1360
BstAUI	TGTACA	1 cut(s)	825
BstBAI	YACGTR	2 cut(s)	195, 641
BstBI	TTCGAA	2 cut(s)	224, 467
BstC8I	GCNNGC	6 cut(s)	119, 177, 300, 376, 394, 1479
BstDEI	CTNAG	5 cut(s)	340, 417, 521, 778, 1185
BstDSI	CCRYGG	2 cut(s)	33, 45
BstENI	CCTNNNNNAGG	1 cut(s)	1576
BstF5I	GGATG	3 cut(s)	282, 841, 1174
BstFNI	CGCG	3 cut(s)	47, 96, 1610
BstH2I	RGCGCY	3 cut(s)	192, 438, 729
BstHHI	GCGC	4 cut(s)	78, 191, 437, 728
BstKTI	GATC	5 cut(s)	216, 775, 883, 1488, 1526
BstMAI	GTCTC	4 cut(s)	144, 511, 913, 1282
BstMBI	GATC	5 cut(s)	213, 772, 880, 1485, 1523
BstMWI	GCNNNNNNNGC	5 cut(s)	195, 441, 1085, 1360, 1445
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	1354
BstPAI	GACNNNNGTC	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	1 cut(s)	942
BstUI	CGCG	3 cut(s)	47, 96, 1610
BstV1I	GCAGC	3 cut(s)	444, 1091, 1229
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	2 cut(s)	772, 1523
BstYI	RGATCY	2 cut(s)	772, 1523
BstZ17I	GTATAC	1 cut(s)	696
BsuRI	GGCC	4 cut(s)	179, 588, 689, 1448
BtgI	CCRYGG	2 cut(s)	33, 45
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	3 cut(s)	282, 841, 1174
BtsI	GCAGTG	1 cut(s)	554
BtsIMutI	CAGTG	2 cut(s)	391, 554
BtuMI	TCGCGA	1 cut(s)	96
BveI	ACCTGC	1 cut(s)	524
Cac8I	GCNNGC	6 cut(s)	119, 177, 300, 376, 394, 1479
CaiI	CAGNNNCTG	1 cut(s)	834
CciI	TCATGA	1 cut(s)	933
CfoI	GCGC	4 cut(s)	78, 191, 437, 728
Cfr13I	GGNCC	3 cut(s)	480, 587, 1065
Cfr42I	CCGCGG	1 cut(s)	48
CseI	GACGC	4 cut(s)	50, 178, 433, 1085
Csp6I	GTAC	3 cut(s)	826, 1304, 1329
CviAII	CATG	7 cut(s)	133, 691, 797, 934, 1123, 1351, 1468
CviQI	GTAC	3 cut(s)	826, 1304, 1329
DdeI	CTNAG	5 cut(s)	340, 417, 521, 778, 1185
DinI	GGCGCC	1 cut(s)	190
DpnI	GATC	5 cut(s)	215, 774, 882, 1487, 1525
DpnII	GATC	5 cut(s)	213, 772, 880, 1485, 1523
EaeI	YGGCCR	1 cut(s)	1446
Eam1104I	CTCTTC	2 cut(s)	1315, 1383
EarI	CTCTTC	2 cut(s)	1315, 1383
EciI	GGCGGA	1 cut(s)	624
Eco130I	CCWWGG	2 cut(s)	721, 1341
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	2 cut(s)	480, 1065
Eco47III	AGCGCT	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	460
Eco72I	CACGTG	2 cut(s)	195, 641
EcoNI	CCTNNNNNAGG	1 cut(s)	1576
EcoO109I	RGGNCCY	1 cut(s)	480
EcoRI	GAATTC	1 cut(s)	1373
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	2 cut(s)	721, 1341
EcoT22I	ATGCAT	1 cut(s)	413
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
ErhI	CCWWGG	2 cut(s)	721, 1341
Esp3I	CGTCTC	1 cut(s)	511
FaeI	CATG	7 cut(s)	136, 694, 800, 937, 1126, 1354, 1471
FalI	AAGNNNNNCTT	3 cut(s)	761, 793, 1586
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	7 cut(s)	132, 690, 796, 933, 1122, 1350, 1467
FauI	CCCGC	1 cut(s)	303
FblI	GTMKAC	2 cut(s)	695, 762
Fnu4HI	GCNGC	8 cut(s)	45, 48, 173, 219, 390, 433, 1080, 1243
FokI	GGATG	3 cut(s)	269, 828, 1181
Fsp4HI	GCNGC	8 cut(s)	45, 48, 173, 219, 390, 433, 1080, 1243
FspBI	CTAG	2 cut(s)	1406, 1568
GlaI	GCGC	4 cut(s)	77, 190, 436, 727
GluI	GCNGC	8 cut(s)	45, 48, 173, 219, 390, 433, 1080, 1243
GsaI	CCCAGC	2 cut(s)	350, 1502
GsuI	CTGGAG	2 cut(s)	305, 493
HaeII	RGCGCY	3 cut(s)	192, 438, 729
HaeIII	GGCC	4 cut(s)	179, 588, 689, 1448
HapII	CCGG	1 cut(s)	1255
HgaI	GACGC	4 cut(s)	50, 178, 433, 1085
HhaI	GCGC	4 cut(s)	78, 191, 437, 728
Hin1I	GRCGYC	3 cut(s)	42, 170, 189
Hin1II	CATG	7 cut(s)	136, 694, 800, 937, 1126, 1354, 1471
Hin6I	GCGC	4 cut(s)	76, 189, 435, 726
HinP1I	GCGC	4 cut(s)	76, 189, 435, 726
HincII	GTYRAC	4 cut(s)	448, 735, 862, 1141
HindII	GTYRAC	4 cut(s)	448, 735, 862, 1141
HindIII	AAGCTT	2 cut(s)	376, 1397
HinfI	GANTC	4 cut(s)	647, 703, 807, 831
HpaII	CCGG	1 cut(s)	1255
HphI	GGTGA	1 cut(s)	843
Hpy188I	TCNGA	7 cut(s)	85, 149, 168, 241, 1057, 1152, 1186
Hpy188III	TCNNGA	9 cut(s)	70, 95, 206, 548, 934, 1336, 1406, 1460, 1552
Hpy99I	CGWCG	3 cut(s)	44, 96, 172
HpyAV	CCTTC	3 cut(s)	246, 484, 1112
HpyCH4III	ACNGT	7 cut(s)	34, 386, 1053, 1069, 1145, 1333, 1549
HpyCH4IV	ACGT	3 cut(s)	194, 246, 640
HpyF10VI	GCNNNNNNNGC	5 cut(s)	195, 441, 1085, 1360, 1445
HpyF3I	CTNAG	5 cut(s)	340, 417, 521, 778, 1185
HpySE526I	ACGT	3 cut(s)	194, 246, 640
Hsp92I	GRCGYC	3 cut(s)	42, 170, 189
Hsp92II	CATG	7 cut(s)	136, 694, 800, 937, 1126, 1354, 1471
HspAI	GCGC	4 cut(s)	76, 189, 435, 726
KasI	GGCGCC	1 cut(s)	188
KspI	CCGCGG	1 cut(s)	48
Kzo9I	GATC	5 cut(s)	213, 772, 880, 1485, 1523
LmnI	GCTCC	3 cut(s)	166, 203, 255
Lsp1109I	GCAGC	3 cut(s)	444, 1091, 1229
LweI	GCATC	8 cut(s)	63, 522, 681, 702, 808, 1018, 1066, 1426
MaeI	CTAG	2 cut(s)	1406, 1568
MaeII	ACGT	3 cut(s)	194, 246, 640
MaeIII	GTNAC	3 cut(s)	456, 799, 1227
MalI	GATC	5 cut(s)	215, 774, 882, 1487, 1525
MboI	GATC	5 cut(s)	213, 772, 880, 1485, 1523
MboII	GAAGA	6 cut(s)	254, 351, 623, 1302, 1394, 1400
MflI	RGATCY	2 cut(s)	772, 1523
MhlI	GDGCHC	4 cut(s)	200, 252, 759, 1150
MluI	ACGCGT	1 cut(s)	1608
Mly113I	GGCGCC	1 cut(s)	189
MlyI	GAGTC	2 cut(s)	801, 825
MmeI	TCCRAC	1 cut(s)	191
Mph1103I	ATGCAT	1 cut(s)	413
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	9 cut(s)	405, 617, 666, 768, 1008, 1061, 1128, 1395, 1589
MslI	CAYNNNNRTG	1 cut(s)	32
MspA1I	CMGCKG	3 cut(s)	47, 175, 1498
MspCI	CTTAAG	1 cut(s)	1060
MspI	CCGG	1 cut(s)	1255
MspR9I	CCNGG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	1162
MvaI	CCWGG	1 cut(s)	140
MvnI	CGCG	3 cut(s)	47, 96, 1610
MwoI	GCNNNNNNNGC	5 cut(s)	195, 441, 1085, 1360, 1445
NarI	GGCGCC	1 cut(s)	189
NdeII	GATC	5 cut(s)	213, 772, 880, 1485, 1523
NlaIII	CATG	7 cut(s)	136, 694, 800, 937, 1126, 1354, 1471
NlaIV	GGNNCC	3 cut(s)	162, 190, 1259
NmuCI	GTSAC	1 cut(s)	456
NruI	TCGCGA	1 cut(s)	96
NsiI	ATGCAT	1 cut(s)	413
NspI	RCATGY	1 cut(s)	1354
NspV	TTCGAA	2 cut(s)	224, 467
OliI	CACNNNNGTG	1 cut(s)	32
PagI	TCATGA	1 cut(s)	933
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PctI	GAATGC	1 cut(s)	1162
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	647, 703
PkrI	GCNGC	8 cut(s)	46, 49, 174, 220, 391, 434, 1081, 1244
PleI	GAGTC	2 cut(s)	801, 825
PluTI	GGCGCC	1 cut(s)	192
PmaCI	CACGTG	2 cut(s)	195, 641
PmlI	CACGTG	2 cut(s)	195, 641
PpsI	GAGTC	2 cut(s)	801, 825
Ppu21I	YACGTR	2 cut(s)	195, 641
PpuMI	RGGWCCY	1 cut(s)	480
PshAI	GACNNNNGTC	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	138
PspCI	CACGTG	2 cut(s)	195, 641
PspFI	CCCAGC	2 cut(s)	346, 1498
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	3 cut(s)	162, 190, 1259
PspPI	GGNCC	3 cut(s)	480, 587, 1065
PspPPI	RGGWCCY	1 cut(s)	480
PstNI	CAGNNNCTG	1 cut(s)	834
PsuI	RGATCY	2 cut(s)	772, 1523
PvuII	CAGCTG	1 cut(s)	1498
RruI	TCGCGA	1 cut(s)	96
RsaI	GTAC	3 cut(s)	827, 1305, 1330
RsaNI	GTAC	3 cut(s)	826, 1304, 1329
RseI	CAYNNNNRTG	1 cut(s)	32
SacII	CCGCGG	1 cut(s)	48
SaqAI	TTAA	9 cut(s)	405, 617, 666, 768, 1008, 1061, 1128, 1395, 1589
SatI	GCNGC	8 cut(s)	45, 48, 173, 219, 390, 433, 1080, 1243
Sau3AI	GATC	5 cut(s)	213, 772, 880, 1485, 1523
Sau96I	GGNCC	3 cut(s)	480, 587, 1065
SchI	GAGTC	2 cut(s)	801, 825
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	4 cut(s)	200, 252, 759, 1150
SfaNI	GCATC	8 cut(s)	63, 522, 681, 702, 808, 1018, 1066, 1426
SfcI	CTRYAG	1 cut(s)	942
SfoI	GGCGCC	1 cut(s)	190
Sfr303I	CCGCGG	1 cut(s)	48
SfuI	TTCGAA	2 cut(s)	224, 467
SgrBI	CCGCGG	1 cut(s)	48
SinI	GGWCC	2 cut(s)	480, 1065
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	3 cut(s)	683, 1060, 1458
SmoI	CTYRAG	3 cut(s)	683, 1060, 1458
SsiI	CCGC	9 cut(s)	45, 47, 115, 173, 219, 296, 390, 635, 644
SspDI	GGCGCC	1 cut(s)	188
SspMI	CTAG	2 cut(s)	1406, 1568
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	2 cut(s)	721, 1341
TaaI	ACNGT	7 cut(s)	34, 386, 1053, 1069, 1145, 1333, 1549
TaiI	ACGT	3 cut(s)	197, 249, 643
TatI	WGTACW	2 cut(s)	825, 1303
TauI	GCSGC	5 cut(s)	47, 50, 175, 221, 392
TfiI	GAWTC	2 cut(s)	647, 703
Tru1I	TTAA	9 cut(s)	405, 617, 666, 768, 1008, 1061, 1128, 1395, 1589
Tru9I	TTAA	9 cut(s)	405, 617, 666, 768, 1008, 1061, 1128, 1395, 1589
TscAI	CASTG	2 cut(s)	391, 561
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	3 cut(s)	432, 1079, 1242
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	7 cut(s)	351, 635, 919, 950, 1131, 1169, 1506
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	391, 561
Vha464I	CTTAAG	1 cut(s)	1060
VpaK11BI	GGWCC	2 cut(s)	480, 1065
XagI	CCTNNNNNAGG	1 cut(s)	1576
XapI	RAATTY	2 cut(s)	925, 1373
XbaI	TCTAGA	1 cut(s)	1405
XceI	RCATGY	1 cut(s)	1354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XmiI	GTMKAC	2 cut(s)	695, 762
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	2 cut(s)	1406, 1568
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.