Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015741

Physical Location & Seq

Genomic Coordinates Reverse (-)

86085207 .. 86095171

Gene Structure 9965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00148360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCGGTTGTTTATGAGGTGGTATCGAGATTCTTGGGATTCTCTGTAGCCCGAGGGGTTGGGCGATGTAGGTGGTTAGGAGTTGGGCCCTTTCGGCTCAAGGAGTTCATTACGGATGACGAACCCGTAACTAGTTTAGGTTTTAGGGAGGAGAGTGGGGAGTTCTTGTTCACCACCGTGGTTATCTATTATACACCGCATTTATCTATTTCTTCTCATTTCACAGGTAGGAGTGCTCCTAGGATATTTTGGAACCAAGCATCTTTTCTGTTTAAAGTTGTTCGAGTTTCCTTATATCCAATCCAATATACTCTACGGGCTTATTGTACTTTTGGATTGAATAAGCAACGTCCTAACGTAGAATCTGGAATAGGAAAATGGCTTCAAGCTATATTAGATTTTCTTCCGTTCATTATTGCTTCTCATGCTGGACCTGCTGGAATTTTCAGCCACACGAAGTATTCTCTTGCATCTAATTCAACTTGCAATGTGGAAGAGGCTGGTGATCCATACAAGGCAGAAATGGAGGAATGCATAGATTTGATAATGGAAGAATTACAGAAAGAGAAATATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

192

Amino Acids

21.77

Weight (kDa)

6.43

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015741)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135791 RchiOBHm_Chr4g0417091 RchiOBHm_Chr5g0011621 RchiOBHm_Chr7g0185391
rosa_multiflora	Rmu_sc0000367.1_g000002 Rmu_sc0001911.1_g000002 Rmu_sc0002218.1_g000003 Rmu_sc0002316.1_g000068 Rmu_sc0010161.1_g000017
rosa_roxburghii	Rroxscaffold_2G00148360
rosa_rugosa	Rorug02G0091100 Rorug02G0128400 Rorug03G0240300 Rorug04G0138600 Rorug04G0178800 Rorug05G0247200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AciI	CCGC	2 cut(s)	5, 197
AclWI	GGATC	1 cut(s)	500
AcsI	RAATTY	1 cut(s)	441
AfaI	GTAC	1 cut(s)	328
AgsI	TTSAA	3 cut(s)	340, 386, 480
AhlI	ACTAGT	1 cut(s)	131
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AleI	CACNNNNGTG	1 cut(s)	176
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
Alw21I	GWGCWC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	1 cut(s)	86
ApaI	GGGCCC	1 cut(s)	90
ApoI	RAATTY	1 cut(s)	441
AspA2I	CCTAGG	1 cut(s)	239
AspS9I	GGNCC	3 cut(s)	86, 87, 431
AsuHPI	GGTGA	2 cut(s)	163, 515
AvaI	CYCGRG	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	431
AvrII	CCTAGG	1 cut(s)	239
BaeGI	GKGCMC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	238
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	2 cut(s)	132, 240
BfmI	CTRYAG	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	442
BglI	GCCNNNNNGGC	1 cut(s)	94
BlnI	CCTAGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	51
BmgT120I	GGNCC	3 cut(s)	86, 87, 431
BmiI	GGNNCC	2 cut(s)	88, 254
BmsI	GCATC	2 cut(s)	269, 479
BpuEI	CTTGAG	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	52, 177, 239
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bse3DI	GCAATG	1 cut(s)	493
BseDI	CCNNGG	3 cut(s)	52, 177, 239
BseGI	GGATG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	90
BshFI	GGCC	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	51
BsmI	GAATGC	1 cut(s)	536
BsnI	GGCC	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	51
Bsp120I	GGGCCC	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	90, 238
Bsp143I	GATC	1 cut(s)	505
BspACI	CCGC	2 cut(s)	5, 197
BspANI	GGCC	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	88, 254
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	500
BsrDI	GCAATG	1 cut(s)	493
BssECI	CCNNGG	3 cut(s)	52, 177, 239
BssMI	GATC	1 cut(s)	505
BssT1I	CCWWGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	489
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	1 cut(s)	508
BstMBI	GATC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 425, 434
BstSFI	CTRYAG	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	88
BtgI	CCRYGG	1 cut(s)	177
BtgZI	GCGATG	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	121
BveI	ACCTGC	1 cut(s)	442
Cfr13I	GGNCC	3 cut(s)	86, 87, 431
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	1 cut(s)	425
CviJI	RGCY	8 cut(s)	50, 88, 97, 320, 382, 389, 450, 500
CviKI_1	RGCY	8 cut(s)	50, 88, 97, 320, 382, 389, 450, 500
CviQI	GTAC	1 cut(s)	327
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
DraI	TTTAAA	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	431
Eco88I	CYCGRG	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	239
EcoT22I	ATGCAT	1 cut(s)	536
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	239
FaeI	CATG	1 cut(s)	428
FaiI	YATR	9 cut(s)	15, 192, 295, 309, 392, 426, 511, 536, 573
FatI	CATG	1 cut(s)	424
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	132, 240
HaeIII	GGCC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	428
HinfI	GANTC	3 cut(s)	30, 39, 362
HphI	GGTGA	2 cut(s)	163, 515
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188III	TCNNGA	2 cut(s)	27, 366
Hpy8I	GTNNAC	1 cut(s)	171
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	2 cut(s)	349, 357
HpyCH4V	TGCA	3 cut(s)	470, 486, 534
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 425, 434
HpySE526I	ACGT	2 cut(s)	349, 357
Hsp92II	CATG	1 cut(s)	428
Kzo9I	GATC	1 cut(s)	505
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	6 cut(s)	210, 351, 414, 423, 447, 486
LweI	GCATC	2 cut(s)	269, 479
MaeI	CTAG	2 cut(s)	132, 240
MaeII	ACGT	2 cut(s)	349, 357
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	507
MboI	GATC	1 cut(s)	505
MboII	GAAGA	4 cut(s)	204, 395, 506, 563
MhlI	GDGCHC	2 cut(s)	90, 238
MluCI	AATT	3 cut(s)	441, 475, 554
MnlI	CCTC	5 cut(s)	10, 47, 142, 490, 520
Mph1103I	ATGCAT	1 cut(s)	536
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	536
MwoI	GCNNNNNNNGC	3 cut(s)	94, 425, 434
NdeII	GATC	1 cut(s)	505
NlaIII	CATG	1 cut(s)	428
NlaIV	GGNNCC	2 cut(s)	88, 254
NsiI	ATGCAT	1 cut(s)	536
OliI	CACNNNNGTG	1 cut(s)	176
PctI	GAATGC	1 cut(s)	536
PfeI	GAWTC	3 cut(s)	30, 39, 362
PspN4I	GGNNCC	2 cut(s)	88, 254
PspOMI	GGGCCC	1 cut(s)	86
PspPI	GGNCC	3 cut(s)	86, 87, 431
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	273
Sau3AI	GATC	1 cut(s)	505
Sau96I	GGNCC	3 cut(s)	86, 87, 431
SduI	GDGCHC	2 cut(s)	90, 238
SetI	ASST	8 cut(s)	21, 74, 142, 229, 352, 360, 391, 436
SfaNI	GCATC	2 cut(s)	269, 479
SfcI	CTRYAG	1 cut(s)	45
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SpeI	ACTAGT	1 cut(s)	131
Sse9I	AATT	3 cut(s)	441, 475, 554
SsiI	CCGC	2 cut(s)	5, 197
SspMI	CTAG	2 cut(s)	132, 240
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	2 cut(s)	352, 360
TaqI	TCGA	2 cut(s)	26, 283
TasI	AATT	3 cut(s)	441, 475, 554
TatI	WGTACW	1 cut(s)	326
TfiI	GAWTC	3 cut(s)	30, 39, 362
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TspDTI	ATGAA	2 cut(s)	97, 400
TspGWI	ACGGA	2 cut(s)	128, 396
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	1 cut(s)	441
XmaJI	CCTAGG	1 cut(s)	239
XspI	CTAG	2 cut(s)	132, 240
Zsp2I	ATGCAT	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.