Rorug04G0138600

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
22646018 .. 22646344
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0138600.1

Sequence Viewer

Length: 327 bp
ATGTTGTCTTCAGGGGTGCCAACTTTTCTTCGGTCTCTATTGTGTATGCTGCGGCTTCCTTCGGTGTTGCTTATAGAGTTCACAATGTTCAAGTTTCTTCTCCTCCTAGAGCCATTTTGGGAAGCTATCAAGTGGCATCCTCCTCCTCAGATCCTCTTCAAACTCAACGTTGATGGCTCGATGTCTGCTTCTGGTATGACTTCTTGTGGCTCTGCTATCAGAAACCACTTTGGTAACCAGTTATTGCCAGTTCTCGGAATATTGGCTATGCTTCCATTGTTGTGGCTGAATGTACTGCTCTCAAGGATGGTTTGTTGGCTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.2

Weight (kDa)

9.1

Isoelectric Point (pI)

60.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 16
AciI CCGC 1 cut(s) 52
AclI AACGTT 1 cut(s) 168
AclWI GGATC 1 cut(s) 145
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 2 cut(s) 91, 160
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 1 cut(s) 145
ApeKI GCWGC 2 cut(s) 49, 319
BanI GGYRCC 1 cut(s) 16
BbvI GCAGC 2 cut(s) 36, 306
BccI CCATC 2 cut(s) 167, 301
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 1 cut(s) 107
BisI GCNGC 3 cut(s) 50, 53, 320
BlsI GCNGC 3 cut(s) 51, 54, 321
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 2 cut(s) 238, 248
BseGI GGATG 2 cut(s) 136, 312
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 238, 248
BseRI GAGGAG 3 cut(s) 92, 132, 135
BseXI GCAGC 2 cut(s) 36, 306
BshNI GGYRCC 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 39
Bso31I GGTCTC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 1 cut(s) 145
BspT107I GGYRCC 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 39
BsrI ACTGG 2 cut(s) 238, 248
BssMI GATC 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 147
BstEII GGTNACC 1 cut(s) 233
BstF5I GGATG 2 cut(s) 136, 312
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 1 cut(s) 150
BstPI GGTNACC 1 cut(s) 233
BstV1I GCAGC 2 cut(s) 36, 306
BstX2I RGATCY 1 cut(s) 150
BstXI CCANNNNNNTGG 1 cut(s) 282
BstYI RGATCY 1 cut(s) 150
BtsCI GGATG 2 cut(s) 136, 312
Csp6I GTAC 1 cut(s) 293
CviJI RGCY 8 cut(s) 55, 112, 125, 177, 210, 266, 286, 319
CviKI_1 RGCY 8 cut(s) 55, 112, 125, 177, 210, 266, 286, 319
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 147
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco31I GGTCTC 1 cut(s) 39
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
FaiI YATR 4 cut(s) 47, 74, 197, 269
Fnu4HI GCNGC 3 cut(s) 50, 53, 320
FokI GGATG 2 cut(s) 123, 319
Fsp4HI GCNGC 3 cut(s) 50, 53, 320
FspBI CTAG 1 cut(s) 107
GluI GCNGC 3 cut(s) 50, 53, 320
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 3 cut(s) 150, 221, 257
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 69
HpyCH4IV ACGT 1 cut(s) 168
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 168
Kzo9I GATC 1 cut(s) 150
LpnPI CCDG 3 cut(s) 177, 251, 261
Lsp1109I GCAGC 2 cut(s) 36, 306
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 233
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 3 cut(s) 20, 89, 148
MflI RGATCY 1 cut(s) 150
MnlI CCTC 5 cut(s) 113, 150, 153, 156, 164
MslI CAYNNNNRTG 1 cut(s) 280
NdeII GATC 1 cut(s) 150
NlaIV GGNNCC 1 cut(s) 18
PkrI GCNGC 3 cut(s) 51, 54, 321
Psp1406I AACGTT 1 cut(s) 168
PspEI GGTNACC 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 150
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 280
SatI GCNGC 3 cut(s) 50, 53, 320
Sau3AI GATC 1 cut(s) 150
SetI ASST 2 cut(s) 127, 171
SfaNI GCATC 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
SsiI CCGC 1 cut(s) 52
SspI AATATT 1 cut(s) 261
SspMI CTAG 1 cut(s) 107
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 179
TaqII GACCGA 1 cut(s) 21
TatI WGTACW 1 cut(s) 292
TauI GCSGC 1 cut(s) 55
TseI GCWGC 2 cut(s) 49, 319
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.