RNA polymerase II C-terminal domain phosphatase-like
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0135791 RchiOBHm_Chr4g0417091 RchiOBHm_Chr5g0011621 RchiOBHm_Chr7g0185391 |
| rosa_multiflora | Rmu_sc0000367.1_g000002 Rmu_sc0001911.1_g000002 Rmu_sc0002218.1_g000003 Rmu_sc0002316.1_g000068 Rmu_sc0010161.1_g000017 |
| rosa_roxburghii | Rroxscaffold_2G00148360 |
| rosa_rugosa | Rorug02G0091100 Rorug02G0128400 Rorug03G0240300 Rorug04G0138600 Rorug04G0178800 Rorug05G0247200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 584 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 889 |
| AccBSI | CCGCTC | 1 cut(s) | 625 |
| AccI | GTMKAC | 1 cut(s) | 246 |
| AciI | CCGC | 8 cut(s) | 44, 582, 625, 628, 713, 875, 934, 1072 |
| AclWI | GGATC | 5 cut(s) | 62, 126, 181, 510, 810 |
| AcoI | YGGCCR | 1 cut(s) | 537 |
| AcvI | CACGTG | 1 cut(s) | 826 |
| AcyI | GRCGYC | 2 cut(s) | 585, 593 |
| AdeI | CACNNNGTG | 1 cut(s) | 849 |
| AfaI | GTAC | 2 cut(s) | 14, 38 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 557, 889, 1001, 1139 |
| AflII | CTTAAG | 1 cut(s) | 347 |
| AgeI | ACCGGT | 3 cut(s) | 33, 1046, 1184 |
| AgsI | TTSAA | 2 cut(s) | 341, 528 |
| AjnI | CCWGG | 1 cut(s) | 758 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 845, 877 |
| AluBI | AGCT | 2 cut(s) | 10, 284 |
| AluI | AGCT | 2 cut(s) | 10, 284 |
| AlwI | GGATC | 5 cut(s) | 62, 126, 181, 510, 810 |
| Ama87I | CYCGRG | 3 cut(s) | 904, 921, 1059 |
| AoxI | GGCC | 4 cut(s) | 277, 537, 956, 1094 |
| ApaI | GGGCCC | 2 cut(s) | 960, 1098 |
| ApeKI | GCWGC | 7 cut(s) | 56, 165, 329, 570, 612, 707, 710 |
| AsiGI | ACCGGT | 3 cut(s) | 33, 1046, 1184 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 391 |
| AspA2I | CCTAGG | 1 cut(s) | 71 |
| AspLEI | GCGC | 2 cut(s) | 587, 707 |
| AspS9I | GGNCC | 7 cut(s) | 277, 956, 957, 992, 1094, 1095, 1130 |
| AsuC2I | CCSGG | 2 cut(s) | 227, 590 |
| AvaI | CYCGRG | 3 cut(s) | 904, 921, 1059 |
| AvaII | GGWCC | 2 cut(s) | 992, 1130 |
| AvrII | CCTAGG | 1 cut(s) | 71 |
| BaeGI | GKGCMC | 2 cut(s) | 960, 1098 |
| BanI | GGYRCC | 1 cut(s) | 584 |
| BanII | GRGCYC | 2 cut(s) | 960, 1098 |
| BbrPI | CACGTG | 1 cut(s) | 826 |
| BbsI | GAAGAC | 1 cut(s) | 358 |
| BbvI | GCAGC | 7 cut(s) | 43, 152, 341, 582, 599, 719, 722 |
| BccI | CCATC | 1 cut(s) | 674 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 499, 533 |
| BciT130I | CCWGG | 1 cut(s) | 760 |
| BcnI | CCSGG | 2 cut(s) | 227, 590 |
| BfaI | CTAG | 4 cut(s) | 72, 99, 281, 380 |
| BfoI | RGCGCY | 1 cut(s) | 588 |
| BfrI | CTTAAG | 1 cut(s) | 347 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 579, 964, 1102 |
| BisI | GCNGC | 9 cut(s) | 57, 166, 330, 571, 583, 613, 626, 708, 711 |
| BlnI | CCTAGG | 1 cut(s) | 71 |
| BlsI | GCNGC | 9 cut(s) | 58, 167, 331, 572, 584, 614, 627, 709, 712 |
| Bme1390I | CCNGG | 3 cut(s) | 227, 590, 760 |
| Bme18I | GGWCC | 2 cut(s) | 992, 1130 |
| BmeT110I | CYCGRG | 3 cut(s) | 904, 921, 1059 |
| BmgT120I | GGNCC | 7 cut(s) | 277, 956, 957, 992, 1094, 1095, 1130 |
| BmiI | GGNNCC | 6 cut(s) | 586, 738, 958, 994, 1096, 1132 |
| BmrFI | CCNGG | 3 cut(s) | 227, 590, 760 |
| BmsI | GCATC | 3 cut(s) | 142, 441, 624 |
| BpiI | GAAGAC | 1 cut(s) | 358 |
| BpuEI | CTTGAG | 1 cut(s) | 537 |
| BpuMI | CCSGG | 2 cut(s) | 227, 590 |
| BsaAI | YACGTR | 1 cut(s) | 826 |
| BsaHI | GRCGYC | 2 cut(s) | 585, 593 |
| BsaJI | CCNNGG | 4 cut(s) | 71, 588, 740, 759 |
| BsaWI | WCCGGW | 3 cut(s) | 33, 1046, 1184 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1022, 1052, 1160, 1190 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 557, 889, 1001, 1139 |
| Bse118I | RCCGGY | 3 cut(s) | 33, 1046, 1184 |
| Bse1I | ACTGG | 3 cut(s) | 93, 1006, 1144 |
| Bse3DI | GCAATG | 1 cut(s) | 692 |
| BseBI | CCWGG | 1 cut(s) | 760 |
| BseDI | CCNNGG | 4 cut(s) | 71, 588, 740, 759 |
| BseGI | GGATG | 4 cut(s) | 157, 643, 682, 750 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 557, 889, 1001, 1139 |
| BseMI | GCAATG | 1 cut(s) | 692 |
| BseMII | CTCAG | 2 cut(s) | 288, 669 |
| BseNI | ACTGG | 3 cut(s) | 93, 1006, 1144 |
| BseRI | GAGGAG | 2 cut(s) | 1034, 1172 |
| BseSI | GKGCMC | 2 cut(s) | 960, 1098 |
| BseXI | GCAGC | 7 cut(s) | 43, 152, 341, 582, 599, 719, 722 |
| BseYI | CCCAGC | 1 cut(s) | 668 |
| Bsh1285I | CGRYCG | 1 cut(s) | 696 |
| BshFI | GGCC | 4 cut(s) | 279, 539, 958, 1096 |
| BshNI | GGYRCC | 1 cut(s) | 584 |
| BshTI | ACCGGT | 3 cut(s) | 33, 1046, 1184 |
| BsiEI | CGRYCG | 1 cut(s) | 696 |
| BsiHKCI | CYCGRG | 3 cut(s) | 904, 921, 1059 |
| BsiSI | CCGG | 7 cut(s) | 34, 226, 536, 579, 590, 1047, 1185 |
| BslFI | GGGAC | 3 cut(s) | 242, 777, 854 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 557, 889, 1001, 1139 |
| BsmFI | GGGAC | 3 cut(s) | 242, 777, 854 |
| BsnI | GGCC | 4 cut(s) | 279, 539, 958, 1096 |
| BsoBI | CYCGRG | 3 cut(s) | 904, 921, 1059 |
| Bsp120I | GGGCCC | 2 cut(s) | 956, 1094 |
| Bsp1286I | GDGCHC | 2 cut(s) | 960, 1098 |
| Bsp1407I | TGTACA | 1 cut(s) | 12 |
| Bsp143I | GATC | 7 cut(s) | 67, 118, 186, 502, 516, 693, 815 |
| Bsp19I | CCATGG | 1 cut(s) | 740 |
| BspACI | CCGC | 8 cut(s) | 44, 582, 625, 628, 713, 875, 934, 1072 |
| BspANI | GGCC | 4 cut(s) | 279, 539, 958, 1096 |
| BspCNI | CTCAG | 2 cut(s) | 289, 668 |
| BspHI | TCATGA | 2 cut(s) | 982, 1120 |
| BspLI | GGNNCC | 6 cut(s) | 586, 738, 958, 994, 1096, 1132 |
| BspPI | GGATC | 5 cut(s) | 62, 126, 181, 510, 810 |
| BspT107I | GGYRCC | 1 cut(s) | 584 |
| BspTI | CTTAAG | 1 cut(s) | 347 |
| BsrBI | CCGCTC | 1 cut(s) | 625 |
| BsrDI | GCAATG | 1 cut(s) | 692 |
| BsrFI | RCCGGY | 3 cut(s) | 33, 1046, 1184 |
| BsrGI | TGTACA | 1 cut(s) | 12 |
| BsrI | ACTGG | 3 cut(s) | 93, 1006, 1144 |
| BssAI | RCCGGY | 3 cut(s) | 33, 1046, 1184 |
| BssECI | CCNNGG | 4 cut(s) | 71, 588, 740, 759 |
| BssMI | GATC | 7 cut(s) | 67, 118, 186, 502, 516, 693, 815 |
| BssNI | GRCGYC | 2 cut(s) | 585, 593 |
| BssT1I | CCWWGG | 2 cut(s) | 71, 740 |
| Bst2UI | CCWGG | 1 cut(s) | 760 |
| Bst4CI | ACNGT | 4 cut(s) | 362, 417, 701, 847 |
| Bst6I | CTCTTC | 3 cut(s) | 198, 649, 848 |
| BstACI | GRCGYC | 2 cut(s) | 585, 593 |
| BstAFI | CTTAAG | 1 cut(s) | 347 |
| BstAUI | TGTACA | 1 cut(s) | 12 |
| BstBAI | YACGTR | 1 cut(s) | 826 |
| BstC8I | GCNNGC | 2 cut(s) | 630, 720 |
| BstDEI | CTNAG | 3 cut(s) | 285, 297, 655 |
| BstDSI | CCRYGG | 1 cut(s) | 740 |
| BstEII | GGTNACC | 1 cut(s) | 29 |
| BstF5I | GGATG | 4 cut(s) | 157, 643, 682, 750 |
| BstH2I | RGCGCY | 1 cut(s) | 588 |
| BstHHI | GCGC | 2 cut(s) | 587, 707 |
| BstKTI | GATC | 7 cut(s) | 70, 121, 189, 505, 519, 696, 818 |
| BstMBI | GATC | 7 cut(s) | 67, 118, 186, 502, 516, 693, 815 |
| BstMCI | CGRYCG | 1 cut(s) | 696 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 579, 719, 820, 964, 1102 |
| BstNI | CCWGG | 1 cut(s) | 760 |
| BstPI | GGTNACC | 1 cut(s) | 29 |
| BstSCI | CCNGG | 3 cut(s) | 225, 588, 758 |
| BstSLI | GKGCMC | 2 cut(s) | 960, 1098 |
| BstV1I | GCAGC | 7 cut(s) | 43, 152, 341, 582, 599, 719, 722 |
| BstV2I | GAAGAC | 1 cut(s) | 358 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 747 |
| BsuRI | GGCC | 4 cut(s) | 279, 539, 958, 1096 |
| BtgI | CCRYGG | 1 cut(s) | 740 |
| BtsCI | GGATG | 4 cut(s) | 157, 643, 682, 750 |
| BtsIMutI | CAGTG | 1 cut(s) | 806 |
| Cac8I | GCNNGC | 2 cut(s) | 630, 720 |
| CciI | TCATGA | 2 cut(s) | 982, 1120 |
| CfoI | GCGC | 2 cut(s) | 587, 707 |
| Cfr10I | RCCGGY | 3 cut(s) | 33, 1046, 1184 |
| Cfr13I | GGNCC | 7 cut(s) | 277, 956, 957, 992, 1094, 1095, 1130 |
| CseI | GACGC | 1 cut(s) | 582 |
| Csp6I | GTAC | 2 cut(s) | 13, 37 |
| CspAI | ACCGGT | 3 cut(s) | 33, 1046, 1184 |
| CviAII | CATG | 9 cut(s) | 210, 741, 884, 970, 983, 1036, 1108, 1121, 1174 |
| CviQI | GTAC | 2 cut(s) | 13, 37 |
| DdeI | CTNAG | 3 cut(s) | 285, 297, 655 |
| DinI | GGCGCC | 1 cut(s) | 586 |
| DpnI | GATC | 7 cut(s) | 69, 120, 188, 504, 518, 695, 817 |
| DpnII | GATC | 7 cut(s) | 67, 118, 186, 502, 516, 693, 815 |
| DraIII | CACNNNGTG | 1 cut(s) | 849 |
| EaeI | YGGCCR | 1 cut(s) | 537 |
| Eam1104I | CTCTTC | 3 cut(s) | 198, 649, 848 |
| EarI | CTCTTC | 3 cut(s) | 198, 649, 848 |
| Eco130I | CCWWGG | 2 cut(s) | 71, 740 |
| Eco24I | GRGCYC | 2 cut(s) | 960, 1098 |
| Eco32I | GATATC | 1 cut(s) | 323 |
| Eco47I | GGWCC | 2 cut(s) | 992, 1130 |
| Eco72I | CACGTG | 1 cut(s) | 826 |
| Eco88I | CYCGRG | 3 cut(s) | 904, 921, 1059 |
| Eco91I | GGTNACC | 1 cut(s) | 29 |
| EcoO109I | RGGNCCY | 2 cut(s) | 957, 1095 |
| EcoO65I | GGTNACC | 1 cut(s) | 29 |
| EcoRII | CCWGG | 1 cut(s) | 758 |
| EcoRV | GATATC | 1 cut(s) | 323 |
| EcoT14I | CCWWGG | 2 cut(s) | 71, 740 |
| EcoT38I | GRGCYC | 2 cut(s) | 960, 1098 |
| EgeI | GGCGCC | 1 cut(s) | 586 |
| EheI | GGCGCC | 1 cut(s) | 586 |
| ErhI | CCWWGG | 2 cut(s) | 71, 740 |
| FaeI | CATG | 9 cut(s) | 213, 744, 887, 973, 986, 1039, 1111, 1124, 1177 |
| FaqI | GGGAC | 3 cut(s) | 242, 777, 854 |
| FatI | CATG | 9 cut(s) | 209, 740, 883, 969, 982, 1035, 1107, 1120, 1173 |
| FauI | CCCGC | 2 cut(s) | 37, 621 |
| FblI | GTMKAC | 1 cut(s) | 246 |
| Fnu4HI | GCNGC | 9 cut(s) | 57, 166, 330, 571, 583, 613, 626, 708, 711 |
| FokI | GGATG | 4 cut(s) | 164, 650, 689, 757 |
| FriOI | GRGCYC | 2 cut(s) | 960, 1098 |
| Fsp4HI | GCNGC | 9 cut(s) | 57, 166, 330, 571, 583, 613, 626, 708, 711 |
| FspBI | CTAG | 4 cut(s) | 72, 99, 281, 380 |
| GlaI | GCGC | 2 cut(s) | 586, 706 |
| GluI | GCNGC | 9 cut(s) | 57, 166, 330, 571, 583, 613, 626, 708, 711 |
| GsaI | CCCAGC | 1 cut(s) | 672 |
| HaeII | RGCGCY | 1 cut(s) | 588 |
| HaeIII | GGCC | 4 cut(s) | 279, 539, 958, 1096 |
| HapII | CCGG | 7 cut(s) | 34, 226, 536, 579, 590, 1047, 1185 |
| HgaI | GACGC | 1 cut(s) | 582 |
| HhaI | GCGC | 2 cut(s) | 587, 707 |
| Hin1I | GRCGYC | 2 cut(s) | 585, 593 |
| Hin1II | CATG | 9 cut(s) | 213, 744, 887, 973, 986, 1039, 1111, 1124, 1177 |
| Hin6I | GCGC | 2 cut(s) | 585, 705 |
| HinP1I | GCGC | 2 cut(s) | 585, 705 |
| HincII | GTYRAC | 1 cut(s) | 247 |
| HindII | GTYRAC | 1 cut(s) | 247 |
| HinfI | GANTC | 6 cut(s) | 102, 126, 145, 641, 724, 909 |
| HpaII | CCGG | 7 cut(s) | 34, 226, 536, 579, 590, 1047, 1185 |
| Hpy166II | GTNNAC | 3 cut(s) | 247, 1041, 1179 |
| Hpy188III | TCNNGA | 8 cut(s) | 99, 149, 338, 554, 897, 906, 983, 1121 |
| Hpy8I | GTNNAC | 3 cut(s) | 247, 1041, 1179 |
| Hpy99I | CGWCG | 3 cut(s) | 598, 623, 701 |
| HpyAV | CCTTC | 3 cut(s) | 70, 99, 402 |
| HpyCH4III | ACNGT | 4 cut(s) | 362, 417, 701, 847 |
| HpyCH4IV | ACGT | 1 cut(s) | 825 |
| HpyCH4V | TGCA | 6 cut(s) | 168, 329, 432, 510, 615, 823 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 579, 719, 820, 964, 1102 |
| HpyF3I | CTNAG | 3 cut(s) | 285, 297, 655 |
| HpySE526I | ACGT | 1 cut(s) | 825 |
| Hsp92I | GRCGYC | 2 cut(s) | 585, 593 |
| Hsp92II | CATG | 9 cut(s) | 213, 744, 887, 973, 986, 1039, 1111, 1124, 1177 |
| HspAI | GCGC | 2 cut(s) | 585, 705 |
| KasI | GGCGCC | 1 cut(s) | 584 |
| Kzo9I | GATC | 7 cut(s) | 67, 118, 186, 502, 516, 693, 815 |
| LmnI | GCTCC | 1 cut(s) | 715 |
| Lsp1109I | GCAGC | 7 cut(s) | 43, 152, 341, 582, 599, 719, 722 |
| LweI | GCATC | 3 cut(s) | 142, 441, 624 |
| MaeI | CTAG | 4 cut(s) | 72, 99, 281, 380 |
| MaeII | ACGT | 1 cut(s) | 825 |
| MaeIII | GTNAC | 4 cut(s) | 29, 408, 997, 1135 |
| MalI | GATC | 7 cut(s) | 69, 120, 188, 504, 518, 695, 817 |
| MbiI | CCGCTC | 1 cut(s) | 625 |
| MboI | GATC | 7 cut(s) | 67, 118, 186, 502, 516, 693, 815 |
| MboII | GAAGA | 5 cut(s) | 215, 358, 636, 643, 865 |
| MfeI | CAATTG | 1 cut(s) | 427 |
| MhlI | GDGCHC | 2 cut(s) | 960, 1098 |
| MluCI | AATT | 6 cut(s) | 169, 427, 546, 728, 768, 777 |
| Mly113I | GGCGCC | 1 cut(s) | 585 |
| MlyI | GAGTC | 4 cut(s) | 111, 154, 635, 718 |
| MroXI | GAANNNNTTC | 1 cut(s) | 391 |
| MseI | TTAA | 3 cut(s) | 302, 348, 776 |
| MslI | CAYNNNNRTG | 1 cut(s) | 745 |
| MspA1I | CMGCKG | 1 cut(s) | 713 |
| MspCI | CTTAAG | 1 cut(s) | 347 |
| MspI | CCGG | 7 cut(s) | 34, 226, 536, 579, 590, 1047, 1185 |
| MspR9I | CCNGG | 3 cut(s) | 227, 590, 760 |
| MunI | CAATTG | 1 cut(s) | 427 |
| MvaI | CCWGG | 1 cut(s) | 760 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 579, 719, 820, 964, 1102 |
| NarI | GGCGCC | 1 cut(s) | 585 |
| NciI | CCSGG | 2 cut(s) | 227, 590 |
| NcoI | CCATGG | 1 cut(s) | 740 |
| NdeII | GATC | 7 cut(s) | 67, 118, 186, 502, 516, 693, 815 |
| NlaIII | CATG | 9 cut(s) | 213, 744, 887, 973, 986, 1039, 1111, 1124, 1177 |
| NlaIV | GGNNCC | 6 cut(s) | 586, 738, 958, 994, 1096, 1132 |
| NmuCI | GTSAC | 1 cut(s) | 1135 |
| PagI | TCATGA | 2 cut(s) | 982, 1120 |
| PdmI | GAANNNNTTC | 1 cut(s) | 391 |
| PfeI | GAWTC | 2 cut(s) | 126, 909 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 889 |
| PinAI | ACCGGT | 3 cut(s) | 33, 1046, 1184 |
| PkrI | GCNGC | 9 cut(s) | 58, 167, 331, 572, 584, 614, 627, 709, 712 |
| Ple19I | CGATCG | 1 cut(s) | 696 |
| PleI | GAGTC | 4 cut(s) | 110, 153, 635, 718 |
| PluTI | GGCGCC | 1 cut(s) | 588 |
| PmaCI | CACGTG | 1 cut(s) | 826 |
| PmlI | CACGTG | 1 cut(s) | 826 |
| PpsI | GAGTC | 4 cut(s) | 110, 153, 635, 718 |
| Ppu21I | YACGTR | 1 cut(s) | 826 |
| Psp6I | CCWGG | 1 cut(s) | 758 |
| PspCI | CACGTG | 1 cut(s) | 826 |
| PspEI | GGTNACC | 1 cut(s) | 29 |
| PspFI | CCCAGC | 1 cut(s) | 668 |
| PspGI | CCWGG | 1 cut(s) | 758 |
| PspN4I | GGNNCC | 6 cut(s) | 586, 738, 958, 994, 1096, 1132 |
| PspOMI | GGGCCC | 2 cut(s) | 956, 1094 |
| PspPI | GGNCC | 7 cut(s) | 277, 956, 957, 992, 1094, 1095, 1130 |
| PvuI | CGATCG | 1 cut(s) | 696 |
| RsaI | GTAC | 2 cut(s) | 14, 38 |
| RsaNI | GTAC | 2 cut(s) | 13, 37 |
| RseI | CAYNNNNRTG | 1 cut(s) | 745 |
| SalI | GTCGAC | 1 cut(s) | 245 |
| SaqAI | TTAA | 3 cut(s) | 302, 348, 776 |
| SatI | GCNGC | 9 cut(s) | 57, 166, 330, 571, 583, 613, 626, 708, 711 |
| Sau3AI | GATC | 7 cut(s) | 67, 118, 186, 502, 516, 693, 815 |
| Sau96I | GGNCC | 7 cut(s) | 277, 956, 957, 992, 1094, 1095, 1130 |
| SchI | GAGTC | 4 cut(s) | 111, 154, 635, 718 |
| ScrFI | CCNGG | 3 cut(s) | 227, 590, 760 |
| SduI | GDGCHC | 2 cut(s) | 960, 1098 |
| SfaNI | GCATC | 3 cut(s) | 142, 441, 624 |
| SfoI | GGCGCC | 1 cut(s) | 586 |
| SinI | GGWCC | 2 cut(s) | 992, 1130 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 745 |
| SmlI | CTYRAG | 2 cut(s) | 347, 552 |
| SmoI | CTYRAG | 2 cut(s) | 347, 552 |
| Sse9I | AATT | 6 cut(s) | 169, 427, 546, 728, 768, 777 |
| SsiI | CCGC | 8 cut(s) | 44, 582, 625, 628, 713, 875, 934, 1072 |
| SspDI | GGCGCC | 1 cut(s) | 584 |
| SspI | AATATT | 1 cut(s) | 460 |
| SspMI | CTAG | 4 cut(s) | 72, 99, 281, 380 |
| StyD4I | CCNGG | 3 cut(s) | 225, 588, 758 |
| StyI | CCWWGG | 2 cut(s) | 71, 740 |
| TaaI | ACNGT | 4 cut(s) | 362, 417, 701, 847 |
| TaiI | ACGT | 1 cut(s) | 828 |
| TaqI | TCGA | 4 cut(s) | 246, 596, 618, 696 |
| TasI | AATT | 6 cut(s) | 169, 427, 546, 728, 768, 777 |
| TatI | WGTACW | 1 cut(s) | 12 |
| TauI | GCSGC | 2 cut(s) | 585, 628 |
| TfiI | GAWTC | 2 cut(s) | 126, 909 |
| Tru1I | TTAA | 3 cut(s) | 302, 348, 776 |
| Tru9I | TTAA | 3 cut(s) | 302, 348, 776 |
| TscAI | CASTG | 1 cut(s) | 806 |
| TseFI | GTSAC | 1 cut(s) | 1135 |
| TseI | GCWGC | 7 cut(s) | 56, 165, 329, 570, 612, 707, 710 |
| Tsp45I | GTSAC | 1 cut(s) | 1135 |
| TspDTI | ATGAA | 7 cut(s) | 327, 390, 901, 971, 1024, 1109, 1162 |
| TspGWI | ACGGA | 3 cut(s) | 138, 1005, 1143 |
| TspRI | CASTG | 1 cut(s) | 806 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 889 |
| Vha464I | CTTAAG | 1 cut(s) | 347 |
| VpaK11BI | GGWCC | 2 cut(s) | 992, 1130 |
| XbaI | TCTAGA | 1 cut(s) | 98 |
| XmaJI | CCTAGG | 1 cut(s) | 71 |
| XmiI | GTMKAC | 1 cut(s) | 246 |
| XmnI | GAANNNNTTC | 1 cut(s) | 391 |
| XspI | CTAG | 4 cut(s) | 72, 99, 281, 380 |