Rmu_sc0001911.1_g000002

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001911.1
Physical Location & Seq
Forward (+)
6985 .. 11537
4553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001911.1_g000002.1.cds

Sequence Viewer

Length: 1206 bp
atgtttgagctgtacatatacacaaagggtaaccggtactatgcgggtctaatggctgccctgcttgatcctaggaaggagtatttcccttccagttctagagtcatatcgtgcgaggatcacggaatcgtggggcgatataagagtctggatgctgtggttggctgcaattattctaatgttttgatccttgatgatacagaagaggcatggacaaaggaaagccgggacaatctaatcgttgtcgacaagtattgtttctttaggcacaaaatgggcctagctaagtcttatgctgagttaaagactgatgaatgtggatatcttgcagcacttcttgaagtgcttaaggcaatcaaccgtgtcttctgtgatgaactagccagaaatccttctgttgtagatgtgttacaactgtttagaaacaattgcatcttggaacaagttgaggataagaatattccattccattctttgctaaataccacctcattcgttgaggatcaatgcaaactgatcgtggcttcaacttttccggccagaataattcctcaagaggggaaaggtcgcagcctatccggcggcgccccggcgtcgattgtagttccctgctgcatcgacgagcggcgggctgtggatgactcttctatcttctcaggcgacaacgctggggaggatgatgggcaatggacgatcgacggtggcgcagcagcggagcaggcgactcaatttgaggttccatggatgtggtgtcattcctggggacgaattggtttaatttcggtgttatcttatggtcagtgtgctgacgagcgatccttgcacgtggtctggttgtgggacacggtgtggaagagggcgttggtttttctggcggttgtccatgaggtggtatcaagatactcgggattcattgtagcccgagagtttgggcggtataggtggttaggggttgggccctttcggctcatggaggtcattcatgatgacggacccgtaactggtttaggttttagggaggagagtggggagttcatgtccaccaccggtcattccccccgagagtttgggcggtataggtggttaggggttgggccctttcggctcatggaggtcattcatgatgacggacccgtgactggtttaggttttagggaggagagtggggagttcatgtccaccaccggtcattcccgtttgatgtaa

Protein Analysis

401

Amino Acids

45.13

Weight (kDa)

5.25

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 584
AccB7I CCANNNNNTGG 1 cut(s) 889
AccBSI CCGCTC 1 cut(s) 625
AccI GTMKAC 1 cut(s) 246
AciI CCGC 8 cut(s) 44, 582, 625, 628, 713, 875, 934, 1072
AclWI GGATC 5 cut(s) 62, 126, 181, 510, 810
AcoI YGGCCR 1 cut(s) 537
AcvI CACGTG 1 cut(s) 826
AcyI GRCGYC 2 cut(s) 585, 593
AdeI CACNNNGTG 1 cut(s) 849
AfaI GTAC 2 cut(s) 14, 38
AfiI CCNNNNNNNGG 4 cut(s) 557, 889, 1001, 1139
AflII CTTAAG 1 cut(s) 347
AgeI ACCGGT 3 cut(s) 33, 1046, 1184
AgsI TTSAA 2 cut(s) 341, 528
AjnI CCWGG 1 cut(s) 758
AjuI GAANNNNNNNTTGG 2 cut(s) 845, 877
AluBI AGCT 2 cut(s) 10, 284
AluI AGCT 2 cut(s) 10, 284
AlwI GGATC 5 cut(s) 62, 126, 181, 510, 810
Ama87I CYCGRG 3 cut(s) 904, 921, 1059
AoxI GGCC 4 cut(s) 277, 537, 956, 1094
ApaI GGGCCC 2 cut(s) 960, 1098
ApeKI GCWGC 7 cut(s) 56, 165, 329, 570, 612, 707, 710
AsiGI ACCGGT 3 cut(s) 33, 1046, 1184
Asp700I GAANNNNTTC 1 cut(s) 391
AspA2I CCTAGG 1 cut(s) 71
AspLEI GCGC 2 cut(s) 587, 707
AspS9I GGNCC 7 cut(s) 277, 956, 957, 992, 1094, 1095, 1130
AsuC2I CCSGG 2 cut(s) 227, 590
AvaI CYCGRG 3 cut(s) 904, 921, 1059
AvaII GGWCC 2 cut(s) 992, 1130
AvrII CCTAGG 1 cut(s) 71
BaeGI GKGCMC 2 cut(s) 960, 1098
BanI GGYRCC 1 cut(s) 584
BanII GRGCYC 2 cut(s) 960, 1098
BbrPI CACGTG 1 cut(s) 826
BbsI GAAGAC 1 cut(s) 358
BbvI GCAGC 7 cut(s) 43, 152, 341, 582, 599, 719, 722
BccI CCATC 1 cut(s) 674
BcgI CGANNNNNNTGC 2 cut(s) 499, 533
BciT130I CCWGG 1 cut(s) 760
BcnI CCSGG 2 cut(s) 227, 590
BfaI CTAG 4 cut(s) 72, 99, 281, 380
BfoI RGCGCY 1 cut(s) 588
BfrI CTTAAG 1 cut(s) 347
BglI GCCNNNNNGGC 3 cut(s) 579, 964, 1102
BisI GCNGC 9 cut(s) 57, 166, 330, 571, 583, 613, 626, 708, 711
BlnI CCTAGG 1 cut(s) 71
BlsI GCNGC 9 cut(s) 58, 167, 331, 572, 584, 614, 627, 709, 712
Bme1390I CCNGG 3 cut(s) 227, 590, 760
Bme18I GGWCC 2 cut(s) 992, 1130
BmeT110I CYCGRG 3 cut(s) 904, 921, 1059
BmgT120I GGNCC 7 cut(s) 277, 956, 957, 992, 1094, 1095, 1130
BmiI GGNNCC 6 cut(s) 586, 738, 958, 994, 1096, 1132
BmrFI CCNGG 3 cut(s) 227, 590, 760
BmsI GCATC 3 cut(s) 142, 441, 624
BpiI GAAGAC 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 537
BpuMI CCSGG 2 cut(s) 227, 590
BsaAI YACGTR 1 cut(s) 826
BsaHI GRCGYC 2 cut(s) 585, 593
BsaJI CCNNGG 4 cut(s) 71, 588, 740, 759
BsaWI WCCGGW 3 cut(s) 33, 1046, 1184
BsaXI ACNNNNNCTCC 4 cut(s) 1022, 1052, 1160, 1190
Bsc4I CCNNNNNNNGG 4 cut(s) 557, 889, 1001, 1139
Bse118I RCCGGY 3 cut(s) 33, 1046, 1184
Bse1I ACTGG 3 cut(s) 93, 1006, 1144
Bse3DI GCAATG 1 cut(s) 692
BseBI CCWGG 1 cut(s) 760
BseDI CCNNGG 4 cut(s) 71, 588, 740, 759
BseGI GGATG 4 cut(s) 157, 643, 682, 750
BseLI CCNNNNNNNGG 4 cut(s) 557, 889, 1001, 1139
BseMI GCAATG 1 cut(s) 692
BseMII CTCAG 2 cut(s) 288, 669
BseNI ACTGG 3 cut(s) 93, 1006, 1144
BseRI GAGGAG 2 cut(s) 1034, 1172
BseSI GKGCMC 2 cut(s) 960, 1098
BseXI GCAGC 7 cut(s) 43, 152, 341, 582, 599, 719, 722
BseYI CCCAGC 1 cut(s) 668
Bsh1285I CGRYCG 1 cut(s) 696
BshFI GGCC 4 cut(s) 279, 539, 958, 1096
BshNI GGYRCC 1 cut(s) 584
BshTI ACCGGT 3 cut(s) 33, 1046, 1184
BsiEI CGRYCG 1 cut(s) 696
BsiHKCI CYCGRG 3 cut(s) 904, 921, 1059
BsiSI CCGG 7 cut(s) 34, 226, 536, 579, 590, 1047, 1185
BslFI GGGAC 3 cut(s) 242, 777, 854
BslI CCNNNNNNNGG 4 cut(s) 557, 889, 1001, 1139
BsmFI GGGAC 3 cut(s) 242, 777, 854
BsnI GGCC 4 cut(s) 279, 539, 958, 1096
BsoBI CYCGRG 3 cut(s) 904, 921, 1059
Bsp120I GGGCCC 2 cut(s) 956, 1094
Bsp1286I GDGCHC 2 cut(s) 960, 1098
Bsp1407I TGTACA 1 cut(s) 12
Bsp143I GATC 7 cut(s) 67, 118, 186, 502, 516, 693, 815
Bsp19I CCATGG 1 cut(s) 740
BspACI CCGC 8 cut(s) 44, 582, 625, 628, 713, 875, 934, 1072
BspANI GGCC 4 cut(s) 279, 539, 958, 1096
BspCNI CTCAG 2 cut(s) 289, 668
BspHI TCATGA 2 cut(s) 982, 1120
BspLI GGNNCC 6 cut(s) 586, 738, 958, 994, 1096, 1132
BspPI GGATC 5 cut(s) 62, 126, 181, 510, 810
BspT107I GGYRCC 1 cut(s) 584
BspTI CTTAAG 1 cut(s) 347
BsrBI CCGCTC 1 cut(s) 625
BsrDI GCAATG 1 cut(s) 692
BsrFI RCCGGY 3 cut(s) 33, 1046, 1184
BsrGI TGTACA 1 cut(s) 12
BsrI ACTGG 3 cut(s) 93, 1006, 1144
BssAI RCCGGY 3 cut(s) 33, 1046, 1184
BssECI CCNNGG 4 cut(s) 71, 588, 740, 759
BssMI GATC 7 cut(s) 67, 118, 186, 502, 516, 693, 815
BssNI GRCGYC 2 cut(s) 585, 593
BssT1I CCWWGG 2 cut(s) 71, 740
Bst2UI CCWGG 1 cut(s) 760
Bst4CI ACNGT 4 cut(s) 362, 417, 701, 847
Bst6I CTCTTC 3 cut(s) 198, 649, 848
BstACI GRCGYC 2 cut(s) 585, 593
BstAFI CTTAAG 1 cut(s) 347
BstAUI TGTACA 1 cut(s) 12
BstBAI YACGTR 1 cut(s) 826
BstC8I GCNNGC 2 cut(s) 630, 720
BstDEI CTNAG 3 cut(s) 285, 297, 655
BstDSI CCRYGG 1 cut(s) 740
BstEII GGTNACC 1 cut(s) 29
BstF5I GGATG 4 cut(s) 157, 643, 682, 750
BstH2I RGCGCY 1 cut(s) 588
BstHHI GCGC 2 cut(s) 587, 707
BstKTI GATC 7 cut(s) 70, 121, 189, 505, 519, 696, 818
BstMBI GATC 7 cut(s) 67, 118, 186, 502, 516, 693, 815
BstMCI CGRYCG 1 cut(s) 696
BstMWI GCNNNNNNNGC 5 cut(s) 579, 719, 820, 964, 1102
BstNI CCWGG 1 cut(s) 760
BstPI GGTNACC 1 cut(s) 29
BstSCI CCNGG 3 cut(s) 225, 588, 758
BstSLI GKGCMC 2 cut(s) 960, 1098
BstV1I GCAGC 7 cut(s) 43, 152, 341, 582, 599, 719, 722
BstV2I GAAGAC 1 cut(s) 358
BstXI CCANNNNNNTGG 1 cut(s) 747
BsuRI GGCC 4 cut(s) 279, 539, 958, 1096
BtgI CCRYGG 1 cut(s) 740
BtsCI GGATG 4 cut(s) 157, 643, 682, 750
BtsIMutI CAGTG 1 cut(s) 806
Cac8I GCNNGC 2 cut(s) 630, 720
CciI TCATGA 2 cut(s) 982, 1120
CfoI GCGC 2 cut(s) 587, 707
Cfr10I RCCGGY 3 cut(s) 33, 1046, 1184
Cfr13I GGNCC 7 cut(s) 277, 956, 957, 992, 1094, 1095, 1130
CseI GACGC 1 cut(s) 582
Csp6I GTAC 2 cut(s) 13, 37
CspAI ACCGGT 3 cut(s) 33, 1046, 1184
CviAII CATG 9 cut(s) 210, 741, 884, 970, 983, 1036, 1108, 1121, 1174
CviQI GTAC 2 cut(s) 13, 37
DdeI CTNAG 3 cut(s) 285, 297, 655
DinI GGCGCC 1 cut(s) 586
DpnI GATC 7 cut(s) 69, 120, 188, 504, 518, 695, 817
DpnII GATC 7 cut(s) 67, 118, 186, 502, 516, 693, 815
DraIII CACNNNGTG 1 cut(s) 849
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 3 cut(s) 198, 649, 848
EarI CTCTTC 3 cut(s) 198, 649, 848
Eco130I CCWWGG 2 cut(s) 71, 740
Eco24I GRGCYC 2 cut(s) 960, 1098
Eco32I GATATC 1 cut(s) 323
Eco47I GGWCC 2 cut(s) 992, 1130
Eco72I CACGTG 1 cut(s) 826
Eco88I CYCGRG 3 cut(s) 904, 921, 1059
Eco91I GGTNACC 1 cut(s) 29
EcoO109I RGGNCCY 2 cut(s) 957, 1095
EcoO65I GGTNACC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 758
EcoRV GATATC 1 cut(s) 323
EcoT14I CCWWGG 2 cut(s) 71, 740
EcoT38I GRGCYC 2 cut(s) 960, 1098
EgeI GGCGCC 1 cut(s) 586
EheI GGCGCC 1 cut(s) 586
ErhI CCWWGG 2 cut(s) 71, 740
FaeI CATG 9 cut(s) 213, 744, 887, 973, 986, 1039, 1111, 1124, 1177
FaqI GGGAC 3 cut(s) 242, 777, 854
FatI CATG 9 cut(s) 209, 740, 883, 969, 982, 1035, 1107, 1120, 1173
FauI CCCGC 2 cut(s) 37, 621
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 9 cut(s) 57, 166, 330, 571, 583, 613, 626, 708, 711
FokI GGATG 4 cut(s) 164, 650, 689, 757
FriOI GRGCYC 2 cut(s) 960, 1098
Fsp4HI GCNGC 9 cut(s) 57, 166, 330, 571, 583, 613, 626, 708, 711
FspBI CTAG 4 cut(s) 72, 99, 281, 380
GlaI GCGC 2 cut(s) 586, 706
GluI GCNGC 9 cut(s) 57, 166, 330, 571, 583, 613, 626, 708, 711
GsaI CCCAGC 1 cut(s) 672
HaeII RGCGCY 1 cut(s) 588
HaeIII GGCC 4 cut(s) 279, 539, 958, 1096
HapII CCGG 7 cut(s) 34, 226, 536, 579, 590, 1047, 1185
HgaI GACGC 1 cut(s) 582
HhaI GCGC 2 cut(s) 587, 707
Hin1I GRCGYC 2 cut(s) 585, 593
Hin1II CATG 9 cut(s) 213, 744, 887, 973, 986, 1039, 1111, 1124, 1177
Hin6I GCGC 2 cut(s) 585, 705
HinP1I GCGC 2 cut(s) 585, 705
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 6 cut(s) 102, 126, 145, 641, 724, 909
HpaII CCGG 7 cut(s) 34, 226, 536, 579, 590, 1047, 1185
Hpy166II GTNNAC 3 cut(s) 247, 1041, 1179
Hpy188III TCNNGA 8 cut(s) 99, 149, 338, 554, 897, 906, 983, 1121
Hpy8I GTNNAC 3 cut(s) 247, 1041, 1179
Hpy99I CGWCG 3 cut(s) 598, 623, 701
HpyAV CCTTC 3 cut(s) 70, 99, 402
HpyCH4III ACNGT 4 cut(s) 362, 417, 701, 847
HpyCH4IV ACGT 1 cut(s) 825
HpyCH4V TGCA 6 cut(s) 168, 329, 432, 510, 615, 823
HpyF10VI GCNNNNNNNGC 5 cut(s) 579, 719, 820, 964, 1102
HpyF3I CTNAG 3 cut(s) 285, 297, 655
HpySE526I ACGT 1 cut(s) 825
Hsp92I GRCGYC 2 cut(s) 585, 593
Hsp92II CATG 9 cut(s) 213, 744, 887, 973, 986, 1039, 1111, 1124, 1177
HspAI GCGC 2 cut(s) 585, 705
KasI GGCGCC 1 cut(s) 584
Kzo9I GATC 7 cut(s) 67, 118, 186, 502, 516, 693, 815
LmnI GCTCC 1 cut(s) 715
Lsp1109I GCAGC 7 cut(s) 43, 152, 341, 582, 599, 719, 722
LweI GCATC 3 cut(s) 142, 441, 624
MaeI CTAG 4 cut(s) 72, 99, 281, 380
MaeII ACGT 1 cut(s) 825
MaeIII GTNAC 4 cut(s) 29, 408, 997, 1135
MalI GATC 7 cut(s) 69, 120, 188, 504, 518, 695, 817
MbiI CCGCTC 1 cut(s) 625
MboI GATC 7 cut(s) 67, 118, 186, 502, 516, 693, 815
MboII GAAGA 5 cut(s) 215, 358, 636, 643, 865
MfeI CAATTG 1 cut(s) 427
MhlI GDGCHC 2 cut(s) 960, 1098
MluCI AATT 6 cut(s) 169, 427, 546, 728, 768, 777
Mly113I GGCGCC 1 cut(s) 585
MlyI GAGTC 4 cut(s) 111, 154, 635, 718
MroXI GAANNNNTTC 1 cut(s) 391
MseI TTAA 3 cut(s) 302, 348, 776
MslI CAYNNNNRTG 1 cut(s) 745
MspA1I CMGCKG 1 cut(s) 713
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 7 cut(s) 34, 226, 536, 579, 590, 1047, 1185
MspR9I CCNGG 3 cut(s) 227, 590, 760
MunI CAATTG 1 cut(s) 427
MvaI CCWGG 1 cut(s) 760
MwoI GCNNNNNNNGC 5 cut(s) 579, 719, 820, 964, 1102
NarI GGCGCC 1 cut(s) 585
NciI CCSGG 2 cut(s) 227, 590
NcoI CCATGG 1 cut(s) 740
NdeII GATC 7 cut(s) 67, 118, 186, 502, 516, 693, 815
NlaIII CATG 9 cut(s) 213, 744, 887, 973, 986, 1039, 1111, 1124, 1177
NlaIV GGNNCC 6 cut(s) 586, 738, 958, 994, 1096, 1132
NmuCI GTSAC 1 cut(s) 1135
PagI TCATGA 2 cut(s) 982, 1120
PdmI GAANNNNTTC 1 cut(s) 391
PfeI GAWTC 2 cut(s) 126, 909
PflMI CCANNNNNTGG 1 cut(s) 889
PinAI ACCGGT 3 cut(s) 33, 1046, 1184
PkrI GCNGC 9 cut(s) 58, 167, 331, 572, 584, 614, 627, 709, 712
Ple19I CGATCG 1 cut(s) 696
PleI GAGTC 4 cut(s) 110, 153, 635, 718
PluTI GGCGCC 1 cut(s) 588
PmaCI CACGTG 1 cut(s) 826
PmlI CACGTG 1 cut(s) 826
PpsI GAGTC 4 cut(s) 110, 153, 635, 718
Ppu21I YACGTR 1 cut(s) 826
Psp6I CCWGG 1 cut(s) 758
PspCI CACGTG 1 cut(s) 826
PspEI GGTNACC 1 cut(s) 29
PspFI CCCAGC 1 cut(s) 668
PspGI CCWGG 1 cut(s) 758
PspN4I GGNNCC 6 cut(s) 586, 738, 958, 994, 1096, 1132
PspOMI GGGCCC 2 cut(s) 956, 1094
PspPI GGNCC 7 cut(s) 277, 956, 957, 992, 1094, 1095, 1130
PvuI CGATCG 1 cut(s) 696
RsaI GTAC 2 cut(s) 14, 38
RsaNI GTAC 2 cut(s) 13, 37
RseI CAYNNNNRTG 1 cut(s) 745
SalI GTCGAC 1 cut(s) 245
SaqAI TTAA 3 cut(s) 302, 348, 776
SatI GCNGC 9 cut(s) 57, 166, 330, 571, 583, 613, 626, 708, 711
Sau3AI GATC 7 cut(s) 67, 118, 186, 502, 516, 693, 815
Sau96I GGNCC 7 cut(s) 277, 956, 957, 992, 1094, 1095, 1130
SchI GAGTC 4 cut(s) 111, 154, 635, 718
ScrFI CCNGG 3 cut(s) 227, 590, 760
SduI GDGCHC 2 cut(s) 960, 1098
SfaNI GCATC 3 cut(s) 142, 441, 624
SfoI GGCGCC 1 cut(s) 586
SinI GGWCC 2 cut(s) 992, 1130
SmiMI CAYNNNNRTG 1 cut(s) 745
SmlI CTYRAG 2 cut(s) 347, 552
SmoI CTYRAG 2 cut(s) 347, 552
Sse9I AATT 6 cut(s) 169, 427, 546, 728, 768, 777
SsiI CCGC 8 cut(s) 44, 582, 625, 628, 713, 875, 934, 1072
SspDI GGCGCC 1 cut(s) 584
SspI AATATT 1 cut(s) 460
SspMI CTAG 4 cut(s) 72, 99, 281, 380
StyD4I CCNGG 3 cut(s) 225, 588, 758
StyI CCWWGG 2 cut(s) 71, 740
TaaI ACNGT 4 cut(s) 362, 417, 701, 847
TaiI ACGT 1 cut(s) 828
TaqI TCGA 4 cut(s) 246, 596, 618, 696
TasI AATT 6 cut(s) 169, 427, 546, 728, 768, 777
TatI WGTACW 1 cut(s) 12
TauI GCSGC 2 cut(s) 585, 628
TfiI GAWTC 2 cut(s) 126, 909
Tru1I TTAA 3 cut(s) 302, 348, 776
Tru9I TTAA 3 cut(s) 302, 348, 776
TscAI CASTG 1 cut(s) 806
TseFI GTSAC 1 cut(s) 1135
TseI GCWGC 7 cut(s) 56, 165, 329, 570, 612, 707, 710
Tsp45I GTSAC 1 cut(s) 1135
TspDTI ATGAA 7 cut(s) 327, 390, 901, 971, 1024, 1109, 1162
TspGWI ACGGA 3 cut(s) 138, 1005, 1143
TspRI CASTG 1 cut(s) 806
Van91I CCANNNNNTGG 1 cut(s) 889
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 2 cut(s) 992, 1130
XbaI TCTAGA 1 cut(s) 98
XmaJI CCTAGG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 391
XspI CTAG 4 cut(s) 72, 99, 281, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.