Rmu_sc0000367.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000367.1
OG0015741
Physical Location & Seq
Forward (+)
10819 .. 11496
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000367.1_g000002.1.cds

Sequence Viewer

Length: 678 bp
atggatgcagctgggcgtcaaggcacgacgagcttcttactgatactcggtgggtgtttgtcgggttctagctttaagcttggatctggccgacaaaagttgaggtttgagtggcttgctgcgtggatagcgtctctccgacgttgcgagtccgacgtgactgatttatggtggtggtctgccggcgggtcgtttgaggagaaggaagatgattgcggcggctggtctatgtctttgcttaaagtagttttcttggtttggttttcgattagggttttggttaggtttttctggtctttagcatgttcctactctgttgagctagggttgggtcaaattgaggtgccatggatgtggtgtttctcctggggacgatttggtttattgttggttttgtcttatggtcaatgtgctgacgagcgatcattgcacgtggtcttgcagttttggggcacggtgtggaagagggcgttggttgttttagcggttgtctatgaggtggtatcgatattattgggattctcggtagcccgagacattgggctatatggatggttaggggttgggccccttcggctcatggaagtcatttattgtgatggacccgtaactggtttaggttttagggaggagagtggggaattcttgtccaccaccggtcattcccgtgttttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.22

Weight (kDa)

5.74

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 343
AciI CCGC 4 cut(s) 186, 216, 219, 485
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 641
AcvI CACGTG 1 cut(s) 433
AcyI GRCGYC 1 cut(s) 16
AdeI CACNNNGTG 1 cut(s) 459
AfiI CCNNNNNNNGG 1 cut(s) 611
AgeI ACCGGT 1 cut(s) 656
AjiI CACGTC 1 cut(s) 157
AjnI CCWGG 1 cut(s) 365
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
AluBI AGCT 5 cut(s) 11, 33, 72, 79, 322
AluI AGCT 5 cut(s) 11, 33, 72, 79, 322
Alw26I GTCTC 2 cut(s) 138, 528
AlwI GGATC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 531
AoxI GGCC 2 cut(s) 88, 566
ApaI GGGCCC 1 cut(s) 570
ApeKI GCWGC 2 cut(s) 8, 119
ApoI RAATTY 1 cut(s) 641
AsiGI ACCGGT 1 cut(s) 656
AspS9I GGNCC 3 cut(s) 566, 567, 602
AvaI CYCGRG 1 cut(s) 531
AvaII GGWCC 1 cut(s) 602
BaeGI GKGCMC 2 cut(s) 455, 570
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 570
BbrPI CACGTG 1 cut(s) 433
BbvI GCAGC 2 cut(s) 20, 106
BccI CCATC 2 cut(s) 546, 593
BciT130I CCWGG 1 cut(s) 367
BcoDI GTCTC 2 cut(s) 138, 528
BfaI CTAG 2 cut(s) 69, 323
BglI GCCNNNNNGGC 1 cut(s) 574
BisI GCNGC 4 cut(s) 9, 120, 217, 220
BlsI GCNGC 4 cut(s) 10, 121, 218, 221
Bme1390I CCNGG 1 cut(s) 367
Bme18I GGWCC 1 cut(s) 602
BmeT110I CYCGRG 1 cut(s) 531
BmgBI CACGTC 1 cut(s) 157
BmgT120I GGNCC 3 cut(s) 566, 567, 602
BmiI GGNNCC 4 cut(s) 345, 568, 569, 604
BmrFI CCNGG 1 cut(s) 367
Bsa29I ATCGAT 1 cut(s) 506
BsaAI YACGTR 1 cut(s) 433
BsaHI GRCGYC 1 cut(s) 16
BsaJI CCNNGG 2 cut(s) 347, 366
BsaWI WCCGGW 1 cut(s) 656
Bsc4I CCNNNNNNNGG 1 cut(s) 611
Bse118I RCCGGY 2 cut(s) 182, 656
Bse1I ACTGG 1 cut(s) 616
Bse3DI GCAATG 1 cut(s) 425
BseBI CCWGG 1 cut(s) 367
BseCI ATCGAT 1 cut(s) 506
BseDI CCNNGG 2 cut(s) 347, 366
BseGI GGATG 3 cut(s) 10, 357, 557
BseLI CCNNNNNNNGG 1 cut(s) 611
BseMI GCAATG 1 cut(s) 425
BseNI ACTGG 1 cut(s) 616
BseRI GAGGAG 2 cut(s) 212, 644
BseSI GKGCMC 2 cut(s) 455, 570
BseXI GCAGC 2 cut(s) 20, 106
BseYI CCCAGC 1 cut(s) 11
BshFI GGCC 2 cut(s) 90, 568
BshNI GGYRCC 1 cut(s) 343
BshTI ACCGGT 1 cut(s) 656
BshVI ATCGAT 1 cut(s) 506
BsiHKCI CYCGRG 1 cut(s) 531
BsiSI CCGG 2 cut(s) 183, 657
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 1 cut(s) 611
BsmAI GTCTC 2 cut(s) 138, 528
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 2 cut(s) 90, 568
BsoBI CYCGRG 1 cut(s) 531
Bsp120I GGGCCC 1 cut(s) 566
Bsp1286I GDGCHC 2 cut(s) 455, 570
Bsp143I GATC 2 cut(s) 83, 422
Bsp19I CCATGG 1 cut(s) 347
BspACI CCGC 4 cut(s) 186, 216, 219, 485
BspANI GGCC 2 cut(s) 90, 568
BspDI ATCGAT 1 cut(s) 506
BspLI GGNNCC 4 cut(s) 345, 568, 569, 604
BspPI GGATC 1 cut(s) 91
BspT107I GGYRCC 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 425
BsrFI RCCGGY 2 cut(s) 182, 656
BsrI ACTGG 1 cut(s) 616
BssAI RCCGGY 2 cut(s) 182, 656
BssECI CCNNGG 2 cut(s) 347, 366
BssMI GATC 2 cut(s) 83, 422
BssNI GRCGYC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 367
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 1 cut(s) 458
BstACI GRCGYC 1 cut(s) 16
BstBAI YACGTR 1 cut(s) 433
BstC8I GCNNGC 2 cut(s) 117, 184
BstDSI CCRYGG 1 cut(s) 347
BstF5I GGATG 3 cut(s) 10, 357, 557
BstKTI GATC 2 cut(s) 86, 425
BstMAI GTCTC 2 cut(s) 138, 528
BstMBI GATC 2 cut(s) 83, 422
BstMWI GCNNNNNNNGC 4 cut(s) 30, 128, 427, 574
BstNI CCWGG 1 cut(s) 367
BstNSI RCATGY 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 365
BstSLI GKGCMC 2 cut(s) 455, 570
BstV1I GCAGC 2 cut(s) 20, 106
BstX2I RGATCY 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 354
BstYI RGATCY 1 cut(s) 83
Bsu15I ATCGAT 1 cut(s) 506
BsuRI GGCC 2 cut(s) 90, 568
BsuTUI ATCGAT 1 cut(s) 506
BtgI CCRYGG 1 cut(s) 347
BtrI CACGTC 1 cut(s) 157
BtsCI GGATG 3 cut(s) 10, 357, 557
Cac8I GCNNGC 2 cut(s) 117, 184
Cfr10I RCCGGY 2 cut(s) 182, 656
Cfr13I GGNCC 3 cut(s) 566, 567, 602
ClaI ATCGAT 1 cut(s) 506
CseI GACGC 2 cut(s) 5, 120
CspAI ACCGGT 1 cut(s) 656
CviAII CATG 3 cut(s) 303, 348, 580
DpnI GATC 2 cut(s) 85, 424
DpnII GATC 2 cut(s) 83, 422
DraIII CACNNNGTG 1 cut(s) 459
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 458
Eco130I CCWWGG 1 cut(s) 347
Eco24I GRGCYC 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 602
Eco72I CACGTG 1 cut(s) 433
Eco88I CYCGRG 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 567
EcoRI GAATTC 1 cut(s) 641
EcoRII CCWGG 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 347
EcoT38I GRGCYC 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 347
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 3 cut(s) 306, 351, 583
FaiI YATR 9 cut(s) 169, 230, 304, 349, 402, 495, 547, 549, 581
FaqI GGGAC 1 cut(s) 384
FatI CATG 3 cut(s) 302, 347, 579
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 4 cut(s) 9, 120, 217, 220
FokI GGATG 3 cut(s) 17, 364, 564
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 4 cut(s) 9, 120, 217, 220
FspBI CTAG 2 cut(s) 69, 323
GluI GCNGC 4 cut(s) 9, 120, 217, 220
GsaI CCCAGC 1 cut(s) 15
HaeIII GGCC 2 cut(s) 90, 568
HapII CCGG 2 cut(s) 183, 657
HgaI GACGC 2 cut(s) 5, 120
Hin1I GRCGYC 1 cut(s) 16
Hin1II CATG 3 cut(s) 306, 351, 583
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 2 cut(s) 149, 519
HpaII CCGG 2 cut(s) 183, 657
Hpy166II GTNNAC 1 cut(s) 651
Hpy188I TCNGA 2 cut(s) 140, 154
Hpy8I GTNNAC 1 cut(s) 651
Hpy99I CGWCG 3 cut(s) 31, 144, 158
HpyAV CCTTC 2 cut(s) 196, 581
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 3 cut(s) 142, 156, 432
HpyCH4V TGCA 3 cut(s) 8, 430, 442
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 128, 427, 574
HpySE526I ACGT 3 cut(s) 142, 156, 432
Hsp92I GRCGYC 1 cut(s) 16
Hsp92II CATG 3 cut(s) 306, 351, 583
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
Kzo9I GATC 2 cut(s) 83, 422
LpnPI CCDG 8 cut(s) 72, 196, 208, 277, 352, 379, 597, 670
Lsp1109I GCAGC 2 cut(s) 20, 106
MaeI CTAG 2 cut(s) 69, 323
MaeII ACGT 3 cut(s) 142, 156, 432
MaeIII GTNAC 2 cut(s) 157, 607
MalI GATC 2 cut(s) 85, 424
MboI GATC 2 cut(s) 83, 422
MboII GAAGA 2 cut(s) 218, 475
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 2 cut(s) 455, 570
MluCI AATT 2 cut(s) 336, 641
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 2 cut(s) 163, 177
MnlI CCTC 6 cut(s) 96, 190, 334, 459, 490, 622
MroNI GCCGGC 1 cut(s) 182
MseI TTAA 2 cut(s) 75, 240
MslI CAYNNNNRTG 2 cut(s) 352, 666
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 2 cut(s) 183, 657
MspR9I CCNGG 1 cut(s) 367
MvaI CCWGG 1 cut(s) 367
MwoI GCNNNNNNNGC 4 cut(s) 30, 128, 427, 574
NaeI GCCGGC 1 cut(s) 184
NcoI CCATGG 1 cut(s) 347
NdeII GATC 2 cut(s) 83, 422
NgoMIV GCCGGC 1 cut(s) 182
NlaIII CATG 3 cut(s) 306, 351, 583
NlaIV GGNNCC 4 cut(s) 345, 568, 569, 604
NmuCI GTSAC 1 cut(s) 157
NspI RCATGY 1 cut(s) 306
PdiI GCCGGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 519
PinAI ACCGGT 1 cut(s) 656
PkrI GCNGC 4 cut(s) 10, 121, 218, 221
PleI GAGTC 1 cut(s) 157
PmaCI CACGTG 1 cut(s) 433
PmlI CACGTG 1 cut(s) 433
PpsI GAGTC 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 433
Psp6I CCWGG 1 cut(s) 365
PspCI CACGTG 1 cut(s) 433
PspFI CCCAGC 1 cut(s) 11
PspGI CCWGG 1 cut(s) 365
PspN4I GGNNCC 4 cut(s) 345, 568, 569, 604
PspOMI GGGCCC 1 cut(s) 566
PspPI GGNCC 3 cut(s) 566, 567, 602
PsuI RGATCY 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 11
RseI CAYNNNNRTG 2 cut(s) 352, 666
SaqAI TTAA 2 cut(s) 75, 240
SatI GCNGC 4 cut(s) 9, 120, 217, 220
Sau3AI GATC 2 cut(s) 83, 422
Sau96I GGNCC 3 cut(s) 566, 567, 602
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 367
SduI GDGCHC 2 cut(s) 455, 570
SinI GGWCC 1 cut(s) 602
SmiMI CAYNNNNRTG 2 cut(s) 352, 666
Sse9I AATT 2 cut(s) 336, 641
SsiI CCGC 4 cut(s) 186, 216, 219, 485
SspMI CTAG 2 cut(s) 69, 323
StyD4I CCNGG 1 cut(s) 365
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 3 cut(s) 145, 159, 435
TaqI TCGA 2 cut(s) 266, 506
TasI AATT 2 cut(s) 336, 641
TauI GCSGC 2 cut(s) 219, 222
TfiI GAWTC 1 cut(s) 519
Tru1I TTAA 2 cut(s) 75, 240
Tru9I TTAA 2 cut(s) 75, 240
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 2 cut(s) 8, 119
Tsp45I GTSAC 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 602
XapI RAATTY 1 cut(s) 641
XceI RCATGY 1 cut(s) 306
XspI CTAG 2 cut(s) 69, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.