Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003686

Physical Location & Seq

Genomic Coordinates Forward (+)

31401523 .. 31403597

Gene Structure 2075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0178800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAGTTCGGGTTGTTTAGCGATGCACCGTCAACATCGAGAGCAGTTGTAGGATCCGACATGCAAGATCGTCATTCTTCTCCTCTTGTCATTGGGAGAATTAATTGGGTGATGAGTTCATTGAGTTGGGAGAAGCAAGACAATGATTCTCCAACATGTCGAAAATGGAGAAGTTGGAAGGTGGACGGACGGGTGAATGAAATTGGGAGAGGAACCATAAAATCGTTACCCGAGATTGTAAGCAGTGGCGGTGTTTGCCTAGCACCGTGGGGTAAAGGCTCAAACTTCAGAAACACCAGTGTGAATGCAGGTACTGTGCACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

108

Amino Acids

11.91

Weight (kDa)

9.23

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29120 FvH4_1g29701 FvH4_2g10340 FvH4_3g26319 FvH4_4g05781 FvH4_4g16191 FvH4_4g17212 FvH4_4g18132 FvH4_6g16754 FvH4_6g23731
rosa_chinensis	RchiOBHm_Chr0c29g0501111 RchiOBHm_Chr2g0126951 RchiOBHm_Chr2g0133761 RchiOBHm_Chr4g0407741 RchiOBHm_Chr6g0278911
rosa_laevigata	RLG00000034039
rosa_multiflora	Rmu_co8166508.1_g000001 Rmu_sc0002986.1_g000053 Rmu_sc0005664.1_g000049
rosa_roxburghii	Rroxscaffold_3G00250140 Rroxscaffold_5G00362530 Rroxscaffold_6G00423300
rosa_rugosa	Rorug04G0115900 Rorug04G0116000 Rorug04G0116000 Rorug04G0178600 Rorug04G0178700 Rorug04G0178800 Rorug04G0178800 Rorug05G0495800
rosa_samantha	Rh1CG126400 Rh4AG111400 Rh4BG376900 Rh6BG350300 Rh6BG405500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	299
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	2 cut(s)	48, 61
AcuI	CTGAAG	1 cut(s)	271
AfaI	GTAC	1 cut(s)	313
AflIII	ACRYGT	1 cut(s)	155
AleI	CACNNNNGTG	1 cut(s)	299
Alw21I	GWGCWC	1 cut(s)	321
Alw44I	GTGCAC	1 cut(s)	317
AlwI	GGATC	2 cut(s)	48, 61
AlwNI	CAGNNNCTG	1 cut(s)	314
Ama87I	CYCGRG	1 cut(s)	230
ApaLI	GTGCAC	1 cut(s)	317
AseI	ATTAAT	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	121, 205
AvaI	CYCGRG	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	260
BfuAI	ACCTGC	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	230
BmiI	GGNNCC	2 cut(s)	55, 214
BmsI	GCATC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	266
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	297, 326
BseDI	CCNNGG	1 cut(s)	266
BseNI	ACTGG	2 cut(s)	297, 326
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	310
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	53, 67
BspACI	CCGC	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	55, 214
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	2 cut(s)	48, 61
BsrI	ACTGG	2 cut(s)	297, 326
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	2 cut(s)	53, 67
Bst4CI	ACNGT	3 cut(s)	30, 267, 316
BstDSI	CCRYGG	1 cut(s)	266
BstKTI	GATC	2 cut(s)	56, 70
BstMBI	GATC	2 cut(s)	53, 67
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNSI	RCATGY	2 cut(s)	64, 159
BstSLI	GKGCMC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	266
BtgZI	GCGATG	1 cut(s)	36
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	3 cut(s)	250, 304, 319
BveI	ACCTGC	1 cut(s)	299
CaiI	CAGNNNCTG	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	2 cut(s)	61, 156
CviJI	RGCY	1 cut(s)	279
CviKI_1	RGCY	1 cut(s)	279
CviQI	GTAC	1 cut(s)	312
DpnI	GATC	2 cut(s)	55, 69
DpnII	GATC	2 cut(s)	53, 67
Eco57I	CTGAAG	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	230
FaeI	CATG	2 cut(s)	64, 159
FaiI	YATR	3 cut(s)	62, 157, 218
FatI	CATG	2 cut(s)	60, 155
FspBI	CTAG	1 cut(s)	260
Hin1II	CATG	2 cut(s)	64, 159
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	146
HphI	GGTGA	2 cut(s)	121, 205
Hpy166II	GTNNAC	3 cut(s)	33, 184, 319
Hpy188I	TCNGA	2 cut(s)	58, 290
Hpy188III	TCNNGA	1 cut(s)	39
Hpy8I	GTNNAC	3 cut(s)	33, 184, 319
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	3 cut(s)	30, 267, 316
HpyCH4V	TGCA	4 cut(s)	26, 64, 308, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	64, 159
Kzo9I	GATC	2 cut(s)	53, 67
LpnPI	CCDG	3 cut(s)	294, 307, 310
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	2 cut(s)	55, 69
MboI	GATC	2 cut(s)	53, 67
MboII	GAAGA	1 cut(s)	69
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	3 cut(s)	99, 103, 201
MmeI	TCCRAC	3 cut(s)	81, 155, 176
MnlI	CCTC	2 cut(s)	93, 203
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	310
MwoI	GCNNNNNNNGC	1 cut(s)	255
NdeII	GATC	2 cut(s)	53, 67
NlaIII	CATG	2 cut(s)	64, 159
NlaIV	GGNNCC	2 cut(s)	55, 214
NspI	RCATGY	2 cut(s)	64, 159
OliI	CACNNNNGTG	1 cut(s)	299
PciI	ACATGT	1 cut(s)	155
PctI	GAATGC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	146
PscI	ACATGT	1 cut(s)	155
PshBI	ATTAAT	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	55, 214
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	53, 67
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	2 cut(s)	183, 313
SfaNI	GCATC	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	299
Sse9I	AATT	3 cut(s)	99, 103, 201
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	1 cut(s)	260
TaaI	ACNGT	3 cut(s)	30, 267, 316
TaqI	TCGA	2 cut(s)	38, 160
TasI	AATT	3 cut(s)	99, 103, 201
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	3 cut(s)	250, 304, 326
TspDTI	ATGAA	2 cut(s)	108, 213
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	3 cut(s)	250, 304, 326
VneI	GTGCAC	1 cut(s)	317
VspI	ATTAAT	1 cut(s)	102
XceI	RCATGY	2 cut(s)	64, 159
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.