Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003686

Physical Location & Seq

Genomic Coordinates Forward (+)

21695393 .. 21697565

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAGTTTAAACCAACCTCACACGAGTTCACCGGTCGCCGACGAGTTCAAACCAACCTCCCACGAGTTCACCGAAACCCAAAGGAGGTGCCATGTCAAAGTGAAGCTTGTGCTCAAGAAGAATGGGCACTATGGTGATTTCCCATTCCTAGAGAAGAAGATGCTTTGGCTTAGTGGTGAGGGCTGGGAAGGCTGCCCTGTGTCTAACCAAGAGAAACAGGGTGCTAATGGAAATGGTGGATTTACAATTAGCAAAACCTTGGGCAAATTGGAGCTGGTTCTAGTGATGTTTGATTGGGTTATTGGCTTATTTAAGGACAAAGGAGGAGCTTTGGAGGCCTCGAGTTTAGTACTACAGTTCAGCAAAGGAGAGGAAACTCCTCCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.25

Weight (kDa)

6.9

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29120 FvH4_1g29701 FvH4_2g10340 FvH4_3g26319 FvH4_4g05781 FvH4_4g16191 FvH4_4g17212 FvH4_4g18132 FvH4_6g16754 FvH4_6g23731
rosa_chinensis	RchiOBHm_Chr0c29g0501111 RchiOBHm_Chr2g0126951 RchiOBHm_Chr2g0133761 RchiOBHm_Chr4g0407741 RchiOBHm_Chr6g0278911
rosa_laevigata	RLG00000034039
rosa_multiflora	Rmu_co8166508.1_g000001 Rmu_sc0002986.1_g000053 Rmu_sc0005664.1_g000049
rosa_roxburghii	Rroxscaffold_3G00250140 Rroxscaffold_5G00362530 Rroxscaffold_6G00423300
rosa_rugosa	Rorug04G0115900 Rorug04G0116000 Rorug04G0116000 Rorug04G0178600 Rorug04G0178700 Rorug04G0178800 Rorug04G0178800 Rorug05G0495800
rosa_samantha	Rh1CG126400 Rh4AG111400 Rh4BG376900 Rh6BG350300 Rh6BG405500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgeI	ACCGGT	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	49
AleI	CACNNNNGTG	1 cut(s)	132
AluBI	AGCT	3 cut(s)	106, 274, 329
AluI	AGCT	3 cut(s)	106, 274, 329
Alw21I	GWGCWC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	340
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	1 cut(s)	192
AsiGI	ACCGGT	1 cut(s)	31
AsuHPI	GGTGA	4 cut(s)	21, 61, 146, 188
AvaI	CYCGRG	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	87
BauI	CACGAG	2 cut(s)	22, 62
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	179
BfaI	CTAG	2 cut(s)	149, 281
BfmI	CTRYAG	1 cut(s)	353
BisI	GCNGC	1 cut(s)	193
BlsI	GCNGC	1 cut(s)	194
BmcAI	AGTACT	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	89
BmsI	GCATC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse118I	RCCGGY	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseRI	GAGGAG	2 cut(s)	339, 369
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	179
BseYI	CCCAGC	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	87
BshTI	ACCGGT	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	84
BsnI	GGCC	1 cut(s)	338
BsoBI	CYCGRG	1 cut(s)	340
Bsp1286I	GDGCHC	2 cut(s)	114, 129
BspANI	GGCC	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	258
BssSI	CACGAG	2 cut(s)	22, 62
BssT1I	CCWWGG	1 cut(s)	258
Bst2BI	CACGAG	2 cut(s)	22, 62
Bst4CI	ACNGT	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	170
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 335
BstSFI	CTRYAG	1 cut(s)	353
BstSLI	GKGCMC	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	350
CspAI	ACCGGT	1 cut(s)	31
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	8 cut(s)	106, 169, 183, 192, 274, 306, 329, 338
CviKI_1	RGCY	8 cut(s)	106, 169, 183, 192, 274, 306, 329, 338
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	1 cut(s)	170
DraI	TTTAAA	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	1 cut(s)	95
FaiI	YATR	3 cut(s)	93, 132, 388
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	193
Fsp4HI	GCNGC	1 cut(s)	193
FspBI	CTAG	2 cut(s)	149, 281
GluI	GCNGC	1 cut(s)	193
GsaI	CCCAGC	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	1 cut(s)	95
HindIII	AAGCTT	1 cut(s)	104
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	4 cut(s)	21, 61, 146, 188
Hpy166II	GTNNAC	2 cut(s)	29, 69
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	2 cut(s)	29, 69
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4V	TGCA	1 cut(s)	386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 335
HpyF3I	CTNAG	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	95
LmnI	GCTCC	2 cut(s)	271, 326
LpnPI	CCDG	5 cut(s)	45, 169, 203, 210, 260
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	2 cut(s)	149, 281
MboII	GAAGA	3 cut(s)	130, 166, 169
MhlI	GDGCHC	2 cut(s)	114, 129
MluCI	AATT	2 cut(s)	246, 266
MnlI	CCTC	9 cut(s)	27, 67, 78, 172, 317, 328, 349, 364, 390
MseI	TTAA	2 cut(s)	8, 312
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	1 cut(s)	32
MssI	GTTTAAAC	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	189, 335
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	89
OliI	CACNNNNGTG	1 cut(s)	132
PaeR7I	CTCGAG	1 cut(s)	340
PceI	AGGCCT	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PinAI	ACCGGT	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	194
PmeI	GTTTAAAC	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	89
PspXI	VCTCGAGB	1 cut(s)	340
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	8, 312
SatI	GCNGC	1 cut(s)	193
ScaI	AGTACT	1 cut(s)	351
SduI	GDGCHC	2 cut(s)	114, 129
SetI	ASST	7 cut(s)	19, 59, 89, 108, 260, 276, 331
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	353
Sfr274I	CTCGAG	1 cut(s)	340
SlaI	CTCGAG	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	2 cut(s)	113, 340
SmoI	CTYRAG	2 cut(s)	113, 340
Sse9I	AATT	2 cut(s)	246, 266
SseBI	AGGCCT	1 cut(s)	338
SspMI	CTAG	2 cut(s)	149, 281
StuI	AGGCCT	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	341
TasI	AATT	2 cut(s)	246, 266
TatI	WGTACW	1 cut(s)	349
Tru1I	TTAA	2 cut(s)	8, 312
Tru9I	TTAA	2 cut(s)	8, 312
TseI	GCWGC	1 cut(s)	192
XhoI	CTCGAG	1 cut(s)	340
XspI	CTAG	2 cut(s)	149, 281
ZrmI	AGTACT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.