Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003686

Physical Location & Seq

Genomic Coordinates Forward (+)

21206260 .. 21211669

Gene Structure 5410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17212.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGACGGCTTCTTCTGGTGTGGACAGTCGCTGCGTGCCGTCGCTAATACGGTGGCGACGGCTCGTTGCCGTAGCCAGAAGCAACGGCCACGCCCTCAACGGCGACGGAAAAAATGCCGTCGCCACGCCGTCGCCGTTTGTCTTTTGCGACGGCAGAATGACTATTGGCGACGGCTTTGTGCCGTGGCTAACTGAATTAATTTTTGTAGTGAATGTTAAAGAGACGGTTCGCGATTTGGTATTCTTGCATGATGAGACGATGTTTGTTGCAGCCCAGAAAAAGTATAAAACTACTTCATTCTTGAGTGGAACATATAAAAATGGTGTGTTTACTGTATGGTTTGTCTCTGATACTTTGAGCATTAAAATTGAGGCTATTGATGATGGAGAGGCTATTTTGACTCAAGTCCTAGGACCAGAGTGCCCTGGTTGTATTAGAGGTGTTGGAGCAGGGGTTACAAAAACAAAGCTATATGCTCAAGCACAAAGTGATACAACAATTGAAAAACTGGAGGCCAAACTACAGGTAATGACTACAAAATATCAAAAAATTGAAGCTGCATTAGCTTCCAAACTTGGAATAAGCTTGGAGGATGATGATAAAAGTGGGGAAGTTGCACCTACAATTTCCAAGTCGGGACATAGAAGCACCCATCAGCCTTCAATTCATGACAAGTGCAAATTGCTAAACTGGAATGGTAATGGTGAAGTAGTGGCAAGAGGTTCCCTCTCAGCAACAGATCCAAAATCAATAATGCATGGGTATACACTTAGACCTGATTGTTATAGGGTTTCCATTAAAGATGTATTTGTGGAAAGAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_23

Protein Analysis

275

Amino Acids

29.86

Weight (kDa)

8.46

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29120 FvH4_1g29701 FvH4_2g10340 FvH4_3g26319 FvH4_4g05781 FvH4_4g16191 FvH4_4g17212 FvH4_4g18132 FvH4_6g16754 FvH4_6g23731
rosa_chinensis	RchiOBHm_Chr0c29g0501111 RchiOBHm_Chr2g0126951 RchiOBHm_Chr2g0133761 RchiOBHm_Chr4g0407741 RchiOBHm_Chr6g0278911
rosa_laevigata	RLG00000034039
rosa_multiflora	Rmu_co8166508.1_g000001 Rmu_sc0002986.1_g000053 Rmu_sc0005664.1_g000049
rosa_roxburghii	Rroxscaffold_3G00250140 Rroxscaffold_5G00362530 Rroxscaffold_6G00423300
rosa_rugosa	Rorug04G0115900 Rorug04G0116000 Rorug04G0116000 Rorug04G0178600 Rorug04G0178700 Rorug04G0178800 Rorug04G0178800 Rorug05G0495800
rosa_samantha	Rh1CG126400 Rh4AG111400 Rh4BG376900 Rh6BG350300 Rh6BG405500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	764
AccII	CGCG	1 cut(s)	231
AclWI	GGATC	1 cut(s)	734
AcoI	YGGCCR	1 cut(s)	85
AdeI	CACNNNGTG	1 cut(s)	488
AgsI	TTSAA	3 cut(s)	503, 554, 663
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	4 cut(s)	469, 557, 566, 585
AluI	AGCT	4 cut(s)	469, 557, 566, 585
Alw26I	GTCTC	3 cut(s)	215, 248, 349
AlwI	GGATC	1 cut(s)	734
AlwNI	CAGNNNCTG	1 cut(s)	30
AoxI	GGCC	2 cut(s)	85, 513
ApeKI	GCWGC	3 cut(s)	30, 269, 557
AseI	ATTAAT	1 cut(s)	197
AspA2I	CCTAGG	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	413
AvrII	CCTAGG	1 cut(s)	409
BaeGI	GKGCMC	1 cut(s)	425
BbvI	GCAGC	3 cut(s)	17, 281, 544
BccI	CCATC	2 cut(s)	377, 660
BciT130I	CCWGG	1 cut(s)	426
BcoDI	GTCTC	3 cut(s)	215, 248, 349
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	1 cut(s)	521
BisI	GCNGC	3 cut(s)	31, 270, 558
BlnI	CCTAGG	1 cut(s)	409
BlsI	GCNGC	3 cut(s)	32, 271, 559
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	724
BmrFI	CCNGG	1 cut(s)	426
BoxI	GACNNNNGTC	1 cut(s)	404
BplI	GAGNNNNNCTC	2 cut(s)	711, 743
BpmI	CTGGAG	1 cut(s)	530
BpuEI	CTTGAG	3 cut(s)	322, 387, 462
BsaJI	CCNNGG	3 cut(s)	182, 409, 424
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bse1I	ACTGG	2 cut(s)	513, 695
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	3 cut(s)	182, 409, 424
BseGI	GGATG	1 cut(s)	598
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	2 cut(s)	513, 695
BseSI	GKGCMC	1 cut(s)	425
BseXI	GCAGC	3 cut(s)	17, 281, 544
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	87, 515
BslFI	GGGAC	1 cut(s)	651
BsmAI	GTCTC	3 cut(s)	215, 248, 349
BsmBI	CGTCTC	2 cut(s)	215, 248
BsmFI	GGGAC	1 cut(s)	651
BsnI	GGCC	2 cut(s)	87, 515
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	1 cut(s)	739
Bsp68I	TCGCGA	1 cut(s)	231
BspANI	GGCC	2 cut(s)	87, 515
BspCNI	CTCAG	1 cut(s)	743
BspFNI	CGCG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	1 cut(s)	724
BspPI	GGATC	1 cut(s)	734
BsrI	ACTGG	2 cut(s)	513, 695
BssECI	CCNNGG	3 cut(s)	182, 409, 424
BssMI	GATC	1 cut(s)	739
BssNAI	GTATAC	1 cut(s)	765
BssT1I	CCWWGG	1 cut(s)	409
Bst1107I	GTATAC	1 cut(s)	765
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	4 cut(s)	26, 51, 226, 334
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	730, 770
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	598
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	1 cut(s)	742
BstMAI	GTCTC	3 cut(s)	215, 248, 349
BstMBI	GATC	1 cut(s)	739
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstNI	CCWGG	1 cut(s)	426
BstPAI	GACNNNNGTC	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	424
BstSFI	CTRYAG	1 cut(s)	521
BstSLI	GKGCMC	1 cut(s)	425
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	17, 281, 544
BstX2I	RGATCY	1 cut(s)	739
BstYI	RGATCY	1 cut(s)	739
BstZ17I	GTATAC	1 cut(s)	765
BsuRI	GGCC	2 cut(s)	87, 515
BtgI	CCRYGG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	598
BtuMI	TCGCGA	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	35
CaiI	CAGNNNCTG	1 cut(s)	30
CciI	TCATGA	1 cut(s)	667
Cfr13I	GGNCC	1 cut(s)	413
CviAII	CATG	3 cut(s)	248, 668, 758
DdeI	CTNAG	2 cut(s)	730, 770
DpnI	GATC	1 cut(s)	741
DpnII	GATC	1 cut(s)	739
DraIII	CACNNNGTG	1 cut(s)	488
EaeI	YGGCCR	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	409
EcoT22I	ATGCAT	1 cut(s)	759
ErhI	CCWWGG	1 cut(s)	409
Esp3I	CGTCTC	2 cut(s)	215, 248
FaeI	CATG	3 cut(s)	251, 671, 761
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	3 cut(s)	247, 667, 757
FblI	GTMKAC	1 cut(s)	764
Fnu4HI	GCNGC	3 cut(s)	31, 270, 558
FokI	GGATG	1 cut(s)	605
Fsp4HI	GCNGC	3 cut(s)	31, 270, 558
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	3 cut(s)	31, 270, 558
GsuI	CTGGAG	1 cut(s)	530
HaeIII	GGCC	2 cut(s)	87, 515
Hin1II	CATG	3 cut(s)	251, 671, 761
HindIII	AAGCTT	1 cut(s)	583
HinfI	GANTC	1 cut(s)	400
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	3 cut(s)	22, 330, 765
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	4 cut(s)	230, 301, 636, 668
Hpy8I	GTNNAC	3 cut(s)	22, 330, 765
Hpy99I	CGWCG	7 cut(s)	43, 60, 107, 122, 133, 152, 173
HpyAV	CCTTC	1 cut(s)	669
HpyCH4III	ACNGT	4 cut(s)	26, 51, 226, 334
HpyCH4V	TGCA	6 cut(s)	247, 269, 560, 617, 678, 757
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	2 cut(s)	730, 770
Hsp92II	CATG	3 cut(s)	251, 671, 761
Kzo9I	GATC	1 cut(s)	739
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	3 cut(s)	17, 281, 544
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	1 cut(s)	741
MboI	GATC	1 cut(s)	739
MboII	GAAGA	1 cut(s)	3
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	1 cut(s)	739
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	8 cut(s)	194, 198, 366, 498, 549, 624, 663, 680
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	8 cut(s)	104, 364, 382, 431, 505, 583, 713, 737
Mph1103I	ATGCAT	1 cut(s)	759
MseI	TTAA	4 cut(s)	197, 216, 363, 798
MspR9I	CCNGG	1 cut(s)	426
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	426
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	563
NdeII	GATC	1 cut(s)	739
NlaIII	CATG	3 cut(s)	251, 671, 761
NlaIV	GGNNCC	1 cut(s)	724
NruI	TCGCGA	1 cut(s)	231
NsiI	ATGCAT	1 cut(s)	759
PagI	TCATGA	1 cut(s)	667
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PkrI	GCNGC	3 cut(s)	32, 271, 559
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PshAI	GACNNNNGTC	1 cut(s)	404
PshBI	ATTAAT	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	724
PspPI	GGNCC	1 cut(s)	413
PstNI	CAGNNNCTG	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	739
RruI	TCGCGA	1 cut(s)	231
SaqAI	TTAA	4 cut(s)	197, 216, 363, 798
SatI	GCNGC	3 cut(s)	31, 270, 558
Sau3AI	GATC	1 cut(s)	739
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	1 cut(s)	425
SetI	ASST	9 cut(s)	442, 471, 528, 559, 568, 587, 622, 724, 778
SfcI	CTRYAG	1 cut(s)	521
SinI	GGWCC	1 cut(s)	413
SmlI	CTYRAG	3 cut(s)	301, 402, 477
SmoI	CTYRAG	3 cut(s)	301, 402, 477
Sse9I	AATT	8 cut(s)	194, 198, 366, 498, 549, 624, 663, 680
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	424
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	4 cut(s)	26, 51, 226, 334
TasI	AATT	8 cut(s)	194, 198, 366, 498, 549, 624, 663, 680
Tru1I	TTAA	4 cut(s)	197, 216, 363, 798
Tru9I	TTAA	4 cut(s)	197, 216, 363, 798
TseI	GCWGC	3 cut(s)	30, 269, 557
TspDTI	ATGAA	2 cut(s)	285, 656
TspGWI	ACGGA	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	413
VspI	ATTAAT	1 cut(s)	197
XmaJI	CCTAGG	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	764
XspI	CTAG	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.