Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003686

Physical Location & Seq

Genomic Coordinates Reverse (-)

17850498 .. 17853962

Gene Structure 3465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23731.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGTGGTCTTGGTGGACTGGGTAAAGTTATGGTCGGAGGACACAGCCTGGCCTTGACTCATCGGAGGAAGGCGAAGAAGATGGTGGCTACGGTATATGCCAAAAGCAATAGCCACGCCCTCAACGGTGACGGAAAAAATGCCGTCGCTAAGCCGTCGCCGTTGCTCTTTAGCGACGGCAAGGTGGCTTTTGGCGACGGCATTTTGCCGCCTAAGCCATCACGGGCCCAACCCATCAAGAGGAAATATGCAGGCCCAAGCCACCAAGAGAGAATGGCATGGCCCATCCCGCCCGGGTTCCTTTTAGCATCGGGACGTCACAGAGCCAAGTCGCTCGCCCGGGTTCATCATCGGCGCCTCCGGCCATCACTCAGAGATGATCCAACGGGACCCGGAGAGTTTGCCATAGTCGATCTACTCCACCCCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.3

Weight (kDa)

11.24

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29120 FvH4_1g29701 FvH4_2g10340 FvH4_3g26319 FvH4_4g05781 FvH4_4g16191 FvH4_4g17212 FvH4_4g18132 FvH4_6g16754 FvH4_6g23731
rosa_chinensis	RchiOBHm_Chr0c29g0501111 RchiOBHm_Chr2g0126951 RchiOBHm_Chr2g0133761 RchiOBHm_Chr4g0407741 RchiOBHm_Chr6g0278911
rosa_laevigata	RLG00000034039
rosa_multiflora	Rmu_co8166508.1_g000001 Rmu_sc0002986.1_g000053 Rmu_sc0005664.1_g000049
rosa_roxburghii	Rroxscaffold_3G00250140 Rroxscaffold_5G00362530 Rroxscaffold_6G00423300
rosa_rugosa	Rorug04G0115900 Rorug04G0116000 Rorug04G0116000 Rorug04G0178600 Rorug04G0178700 Rorug04G0178800 Rorug04G0178800 Rorug05G0495800
rosa_samantha	Rh1CG126400 Rh4AG111400 Rh4BG376900 Rh6BG350300 Rh6BG405500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	319
AccB1I	GGYRCC	1 cut(s)	354
AciI	CCGC	2 cut(s)	209, 290
AclWI	GGATC	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	362
AcyI	GRCGYC	2 cut(s)	316, 355
AfiI	CCNNNNNNNGG	1 cut(s)	240
AjnI	CCWGG	1 cut(s)	48
AlwI	GGATC	1 cut(s)	374
Ama87I	CYCGRG	2 cut(s)	293, 339
AoxI	GGCC	5 cut(s)	51, 225, 253, 281, 362
ApaI	GGGCCC	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	357
AspS9I	GGNCC	5 cut(s)	225, 226, 254, 282, 389
AsuC2I	CCSGG	5 cut(s)	294, 295, 340, 341, 393
AsuHPI	GGTGA	1 cut(s)	140
AvaI	CYCGRG	2 cut(s)	293, 339
AvaII	GGWCC	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	229
BccI	CCATC	5 cut(s)	76, 226, 242, 293, 373
BceAI	ACGGC	5 cut(s)	128, 139, 145, 193, 214
BciT130I	CCWGG	1 cut(s)	50
BcnI	CCSGG	5 cut(s)	294, 295, 340, 341, 393
BfoI	RGCGCY	1 cut(s)	358
BisI	GCNGC	1 cut(s)	209
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	210
Bme1390I	CCNGG	6 cut(s)	50, 294, 295, 340, 341, 393
Bme18I	GGWCC	1 cut(s)	389
BmeT110I	CYCGRG	2 cut(s)	293, 339
BmgT120I	GGNCC	5 cut(s)	225, 226, 254, 282, 389
BmiI	GGNNCC	5 cut(s)	227, 299, 356, 390, 391
BmrFI	CCNGG	6 cut(s)	50, 294, 295, 340, 341, 393
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	317
BmuI	ACTGGG	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuMI	CCSGG	5 cut(s)	294, 295, 340, 341, 393
BsaHI	GRCGYC	2 cut(s)	316, 355
BsaJI	CCNNGG	2 cut(s)	293, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	293, 339
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	385
BseNI	ACTGG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	229
BshFI	GGCC	5 cut(s)	53, 227, 255, 283, 364
BshNI	GGYRCC	1 cut(s)	354
BsiHKCI	CYCGRG	2 cut(s)	293, 339
BsiSI	CCGG	4 cut(s)	294, 340, 361, 393
BslFI	GGGAC	2 cut(s)	327, 402
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmFI	GGGAC	2 cut(s)	327, 402
BsnI	GGCC	5 cut(s)	53, 227, 255, 283, 364
BsoBI	CYCGRG	2 cut(s)	293, 339
Bsp120I	GGGCCC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	379, 412
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	2 cut(s)	209, 290
BspANI	GGCC	5 cut(s)	53, 227, 255, 283, 364
BspCNI	CTCAG	1 cut(s)	384
BspLI	GGNNCC	5 cut(s)	227, 299, 356, 390, 391
BspPI	GGATC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	293, 339
BssMI	GATC	2 cut(s)	379, 412
BssNI	GRCGYC	2 cut(s)	316, 355
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	94, 128
BstACI	GRCGYC	2 cut(s)	316, 355
BstC8I	GCNNGC	2 cut(s)	253, 336
BstDEI	CTNAG	3 cut(s)	150, 213, 371
BstF5I	GGATG	1 cut(s)	285
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	2 cut(s)	382, 415
BstMBI	GATC	2 cut(s)	379, 412
BstMWI	GCNNNNNNNGC	3 cut(s)	214, 289, 361
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	6 cut(s)	48, 292, 293, 338, 339, 391
BstSLI	GKGCMC	1 cut(s)	229
BsuRI	GGCC	5 cut(s)	53, 227, 255, 283, 364
BtsCI	GGATG	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	253, 336
CfoI	GCGC	1 cut(s)	357
Cfr13I	GGNCC	5 cut(s)	225, 226, 254, 282, 389
Cfr9I	CCCGGG	2 cut(s)	293, 339
CviAII	CATG	1 cut(s)	279
DdeI	CTNAG	3 cut(s)	150, 213, 371
DinI	GGCGCC	1 cut(s)	356
DpnI	GATC	2 cut(s)	381, 414
DpnII	GATC	2 cut(s)	379, 412
EaeI	YGGCCR	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	389
Eco88I	CYCGRG	2 cut(s)	293, 339
EcoO109I	RGGNCCY	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	229
EgeI	GGCGCC	1 cut(s)	356
EheI	GGCGCC	1 cut(s)	356
FaeI	CATG	1 cut(s)	282
FaiI	YATR	6 cut(s)	32, 97, 99, 249, 280, 407
FaqI	GGGAC	2 cut(s)	327, 402
FatI	CATG	1 cut(s)	278
FauI	CCCGC	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	209
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	209
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	5 cut(s)	53, 227, 255, 283, 364
HapII	CCGG	4 cut(s)	294, 340, 361, 393
HhaI	GCGC	1 cut(s)	357
Hin1I	GRCGYC	2 cut(s)	316, 355
Hin1II	CATG	1 cut(s)	282
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	4 cut(s)	294, 340, 361, 393
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	3 cut(s)	38, 66, 374
Hpy188III	TCNNGA	3 cut(s)	238, 312, 429
Hpy8I	GTNNAC	1 cut(s)	17
Hpy99I	CGWCG	4 cut(s)	149, 160, 179, 200
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	2 cut(s)	94, 128
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	214, 289, 361
HpyF3I	CTNAG	3 cut(s)	150, 213, 371
HpySE526I	ACGT	1 cut(s)	316
Hsp92I	GRCGYC	2 cut(s)	316, 355
Hsp92II	CATG	1 cut(s)	282
HspAI	GCGC	1 cut(s)	355
KasI	GGCGCC	1 cut(s)	354
KflI	GGGWCCC	1 cut(s)	389
Kzo9I	GATC	2 cut(s)	379, 412
LpnPI	CCDG	8 cut(s)	5, 35, 62, 237, 307, 353, 374, 406
LweI	GCATC	1 cut(s)	317
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	2 cut(s)	128, 317
MalI	GATC	2 cut(s)	381, 414
MboI	GATC	2 cut(s)	379, 412
MboII	GAAGA	2 cut(s)	88, 91
MhlI	GDGCHC	1 cut(s)	229
Mly113I	GGCGCC	1 cut(s)	355
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	2 cut(s)	16, 407
MnlI	CCTC	5 cut(s)	32, 60, 131, 234, 368
MspI	CCGG	4 cut(s)	294, 340, 361, 393
MspR9I	CCNGG	6 cut(s)	50, 294, 295, 340, 341, 393
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	3 cut(s)	214, 289, 361
NarI	GGCGCC	1 cut(s)	355
NciI	CCSGG	5 cut(s)	294, 295, 340, 341, 393
NdeII	GATC	2 cut(s)	379, 412
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	5 cut(s)	227, 299, 356, 390, 391
NmuCI	GTSAC	2 cut(s)	128, 317
PkrI	GCNGC	1 cut(s)	210
PleI	GAGTC	1 cut(s)	52
PluTI	GGCGCC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	52
PpuMI	RGGWCCY	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	5 cut(s)	227, 299, 356, 390, 391
PspOMI	GGGCCC	1 cut(s)	225
PspPI	GGNCC	5 cut(s)	225, 226, 254, 282, 389
PspPPI	RGGWCCY	1 cut(s)	389
SatI	GCNGC	1 cut(s)	209
Sau3AI	GATC	2 cut(s)	379, 412
Sau96I	GGNCC	5 cut(s)	225, 226, 254, 282, 389
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	6 cut(s)	50, 294, 295, 340, 341, 393
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	2 cut(s)	186, 319
SfaNI	GCATC	1 cut(s)	317
SfoI	GGCGCC	1 cut(s)	356
SinI	GGWCC	1 cut(s)	389
SmaI	CCCGGG	2 cut(s)	295, 341
SsiI	CCGC	2 cut(s)	209, 290
SspDI	GGCGCC	1 cut(s)	354
StyD4I	CCNGG	6 cut(s)	48, 292, 293, 338, 339, 391
TaaI	ACNGT	2 cut(s)	94, 128
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	411
TauI	GCSGC	1 cut(s)	211
TseFI	GTSAC	2 cut(s)	128, 317
Tsp45I	GTSAC	2 cut(s)	128, 317
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	147
TspMI	CCCGGG	2 cut(s)	293, 339
VpaK11BI	GGWCC	1 cut(s)	389
XmaI	CCCGGG	2 cut(s)	293, 339
ZraI	GACGTC	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.