Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003686

Physical Location & Seq

Genomic Coordinates Forward (+)

42030019 .. 42033088

Gene Structure 3070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25018

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTGAACATTCTACATGTGTGTACATCTACCCTCTGGTGGGTCACTAAGAATCCGAACCAGCTGCGAGGAATTCAAGTCATGAATGGCGCCGTTGCTTTGGTGGTTGTTGTAATCTGTTTGGAGATTAGAGTTGTTTTCCATTCATTTGGGAGATACATTCAGGTGCCTCTGCTTTTGAATTACCTTTTGGTGACTACTACAATGCTTGGAGGTGCAGCTGGAGCTAGTGCCTATGCACTGGGTATGATATCTGATGCCTTCAGCTCCCTCGCTTTCACTGCTCTGGCTGTTGTAGTTAGTGCTGCTGGAGCTATCGTTGTCGGATTTCCTTTTCAGTCAACTGCTCTTAATTGCTTCTTTGATTTGCTACTGTGTTTGATTTGCAATCCTATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.19

Weight (kDa)

7.64

Isoelectric Point (pI)

27.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29120 FvH4_1g29701 FvH4_2g10340 FvH4_3g26319 FvH4_4g05781 FvH4_4g16191 FvH4_4g17212 FvH4_4g18132 FvH4_6g16754 FvH4_6g23731
rosa_chinensis	RchiOBHm_Chr0c29g0501111 RchiOBHm_Chr2g0126951 RchiOBHm_Chr2g0133761 RchiOBHm_Chr4g0407741 RchiOBHm_Chr6g0278911
rosa_laevigata	RLG00000034039
rosa_multiflora	Rmu_co8166508.1_g000001 Rmu_sc0002986.1_g000053 Rmu_sc0005664.1_g000049
rosa_roxburghii	Rroxscaffold_3G00250140 Rroxscaffold_5G00362530 Rroxscaffold_6G00423300
rosa_rugosa	Rorug04G0115900 Rorug04G0116000 Rorug04G0116000 Rorug04G0178600 Rorug04G0178700 Rorug04G0178800 Rorug04G0178800 Rorug05G0495800
rosa_samantha	Rh1CG126400 Rh4AG111400 Rh4BG376900 Rh6BG350300 Rh6BG405500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	89, 166
AcsI	RAATTY	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	247
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	2 cut(s)	39, 40
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	3 cut(s)	7, 77, 181
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	5 cut(s)	64, 221, 227, 267, 314
AluI	AGCT	5 cut(s)	64, 221, 227, 267, 314
ApeKI	GCWGC	3 cut(s)	64, 218, 305
ApoI	RAATTY	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	205
BanI	GGYRCC	2 cut(s)	89, 166
BbvI	GCAGC	3 cut(s)	51, 230, 292
BceAI	ACGGC	1 cut(s)	77
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BfaI	CTAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	3 cut(s)	65, 219, 306
BlsI	GCNGC	3 cut(s)	66, 220, 307
BmiI	GGNNCC	2 cut(s)	91, 168
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	251
BpmI	CTGGAG	2 cut(s)	243, 330
BsaHI	GRCGYC	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 40
Bse1I	ACTGG	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	39, 40
BseNI	ACTGG	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	51, 230, 292
BsgI	GTGCAG	1 cut(s)	237
BshNI	GGYRCC	2 cut(s)	89, 166
BslI	CCNNNNNNNGG	2 cut(s)	39, 40
Bsp1407I	TGTACA	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	91, 168
BspT107I	GGYRCC	2 cut(s)	89, 166
BsrGI	TGTACA	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	246
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	375
BstACI	GRCGYC	1 cut(s)	90
BstAUI	TGTACA	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 281, 311
BstNSI	RCATGY	1 cut(s)	20
BstV1I	GCAGC	3 cut(s)	51, 230, 292
BstXI	CCANNNNNNTGG	1 cut(s)	149
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	239, 279
CciI	TCATGA	1 cut(s)	81
CfoI	GCGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	2 cut(s)	17, 82
CviJI	RGCY	6 cut(s)	64, 221, 227, 267, 290, 314
CviKI_1	RGCY	6 cut(s)	64, 221, 227, 267, 290, 314
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	1 cut(s)	48
DinI	GGCGCC	1 cut(s)	91
Eco32I	GATATC	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	72
EcoRV	GATATC	1 cut(s)	252
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaeI	CATG	2 cut(s)	20, 85
FaiI	YATR	4 cut(s)	18, 83, 237, 248
FatI	CATG	2 cut(s)	16, 81
Fnu4HI	GCNGC	3 cut(s)	65, 219, 306
Fsp4HI	GCNGC	3 cut(s)	65, 219, 306
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	3 cut(s)	65, 219, 306
GsuI	CTGGAG	2 cut(s)	243, 330
HaeII	RGCGCY	1 cut(s)	93
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	20, 85
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HinfI	GANTC	1 cut(s)	52
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	24, 342
Hpy188I	TCNGA	3 cut(s)	57, 256, 326
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	2 cut(s)	24, 342
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4V	TGCA	3 cut(s)	218, 239, 387
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 281, 311
HpyF3I	CTNAG	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	20, 85
HspAI	GCGC	1 cut(s)	90
KasI	GGCGCC	1 cut(s)	89
LmnI	GCTCC	3 cut(s)	224, 272, 311
LpnPI	CCDG	7 cut(s)	22, 74, 149, 207, 227, 272, 294
Lsp1109I	GCAGC	3 cut(s)	51, 230, 292
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	43, 193
MluCI	AATT	3 cut(s)	72, 181, 352
Mly113I	GGCGCC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	5 cut(s)	44, 62, 180, 206, 281
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	2 cut(s)	64, 221
MwoI	GCNNNNNNNGC	3 cut(s)	224, 281, 311
NarI	GGCGCC	1 cut(s)	90
NlaIII	CATG	2 cut(s)	20, 85
NlaIV	GGNNCC	2 cut(s)	91, 168
NmuCI	GTSAC	2 cut(s)	43, 193
NspI	RCATGY	1 cut(s)	20
PagI	TCATGA	1 cut(s)	81
PciI	ACATGT	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	66, 220, 307
PluTI	GGCGCC	1 cut(s)	93
PscI	ACATGT	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	91, 168
PvuII	CAGCTG	2 cut(s)	64, 221
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	3 cut(s)	65, 219, 306
SetI	ASST	8 cut(s)	66, 168, 189, 217, 223, 229, 269, 316
SfaNI	GCATC	1 cut(s)	247
SfoI	GGCGCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	3 cut(s)	72, 181, 352
SspDI	GGCGCC	1 cut(s)	89
SspMI	CTAG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	375
TasI	AATT	3 cut(s)	72, 181, 352
TatI	WGTACW	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	2 cut(s)	246, 286
TseFI	GTSAC	2 cut(s)	43, 193
TseI	GCWGC	3 cut(s)	64, 218, 305
Tsp45I	GTSAC	2 cut(s)	43, 193
TspDTI	ATGAA	2 cut(s)	98, 135
TspRI	CASTG	2 cut(s)	246, 286
XapI	RAATTY	1 cut(s)	72
XceI	RCATGY	1 cut(s)	20
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.